| 1. |
- Abt, I, et al.
(författare)
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Inclusive V-0 production cross sections from 920 GeV fixed target proton-nucleus collisions
- 2003
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Ingår i: European Physical Journal C. Particles and Fields. - : Springer Science and Business Media LLC. - 1434-6044. ; 29:2, s. 181-190
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Tidskriftsartikel (refereegranskat)abstract
- Inclusive differential cross sections dsigma(pA)/dx(F) and dsigma(pA)/dp(t)(2) for the production of K-S(0), Lambda, and (&ULambda;) over bar particles are measured at HERA in proton-induced reactions on C, Al, Ti, and W targets. The incident beam energy is 920 GeV, corresponding to roots = 41.6 GeV in the proton-nucleon system. The ratios of differential cross sections dsigma(pA)(K-S(0))/dsigma(pA)(Lambda) and dsigma(pA)((&ULambda;) over bar)/dsigma(pA) (Lambda) are measured to be 6.2 +/- 0.5 and 0.66 +/- 0.07, respectively, for x(F) approximate to -0.06. No significant dependence upon the target material is observed. Within errors, the slopes of the transverse momentum distributions da,Ald t also show no significant dependence upon the target material. The dependence of the extrapolated total cross sections sigma(pA) on the atomic mass A of the target material is discussed, and the deduced cross sections per nucleon sigma(pN) are compared with results obtained at other energies.
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| 2. |
- Abt, I, et al.
(författare)
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Measurement of the b(b)over-bar production cross section in 920 GeV fixed-target proton-nucleus collisions
- 2003
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Ingår i: European Physical Journal C. Particles and Fields. - : Springer Science and Business Media LLC. - 1434-6044. ; 26:3, s. 345-355
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Tidskriftsartikel (refereegranskat)abstract
- Using the HERA-B detector, the b (b) over bar production cross section has been measured in 920 GeV proton collisions on carbon and titanium targets. The b (b) over bar production was tagged via inclusive bottom quark decays into J/psi by exploiting the longitudinal separation of J/psi --> l(+)l(-) decay vertices from the primary proton-nucleus interaction. Both e(+)e(-) and mu(+)mu(-) channels have been reconstructed and the combined analysis yields the cross section sigma(b (b) over bar) = 32(-12)(+14)(stat) (+6)(-7)(sys) nb/nucleon.
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| 3. |
- Beal, Jacob, et al.
(författare)
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Robust estimation of bacterial cell count from optical density
- 2020
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Ingår i: Communications Biology. - : Springer Science and Business Media LLC. - 2399-3642. ; 3:1
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Tidskriftsartikel (refereegranskat)abstract
- Optical density (OD) is widely used to estimate the density of cells in liquid culture, but cannot be compared between instruments without a standardized calibration protocol and is challenging to relate to actual cell count. We address this with an interlaboratory study comparing three simple, low-cost, and highly accessible OD calibration protocols across 244 laboratories, applied to eight strains of constitutive GFP-expressing E. coli. Based on our results, we recommend calibrating OD to estimated cell count using serial dilution of silica microspheres, which produces highly precise calibration (95.5% of residuals <1.2-fold), is easily assessed for quality control, also assesses instrument effective linear range, and can be combined with fluorescence calibration to obtain units of Molecules of Equivalent Fluorescein (MEFL) per cell, allowing direct comparison and data fusion with flow cytometry measurements: in our study, fluorescence per cell measurements showed only a 1.07-fold mean difference between plate reader and flow cytometry data.
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| 4. |
- Chatterjee, S., et al.
(författare)
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Protein Paucimannosylation Is an Enriched N-Glycosylation Signature of Human Cancers
- 2019
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Ingår i: Proteomics. - : Wiley. - 1615-9853 .- 1615-9861. ; 19:21-22
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Tidskriftsartikel (refereegranskat)abstract
- While aberrant protein glycosylation is a recognized characteristic of human cancers, advances in glycoanalytics continue to discover new associations between glycoproteins and tumorigenesis. This glycomics‐centric study investigates a possible link between protein paucimannosylation, an under‐studied class of human N‐glycosylation [Man1‐3GlcNAc2Fuc0‐1], and cancer. The paucimannosidic glycans (PMGs) of 34 cancer cell lines and 133 tissue samples spanning 11 cancer types and matching non‐cancerous specimens are profiled from 467 published and unpublished PGC‐LC‐MS/MS N‐glycome datasets collected over a decade. PMGs, particularly Man2‐3GlcNAc2Fuc1, are prominent features of 29 cancer cell lines, but the PMG level varies dramatically across and within the cancer types (1.0–50.2%). Analyses of paired (tumor/non‐tumor) and stage‐stratified tissues demonstrate that PMGs are significantly enriched in tumor tissues from several cancer types including liver cancer (p = 0.0033) and colorectal cancer (p = 0.0017) and is elevated as a result of prostate cancer and chronic lymphocytic leukaemia progression (p < 0.05). Surface expression of paucimannosidic epitopes is demonstrated on human glioblastoma cells using immunofluorescence while biosynthetic involvement of N‐acetyl‐β‐hexosaminidase is indicated by quantitative proteomics. This intriguing association between protein paucimannosylation and human cancers warrants further exploration to detail the biosynthesis, cellular location(s), protein carriers, and functions of paucimannosylation in tumorigenesis and metastasis.
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| 5. |
- Nieminen, T. A., et al.
(författare)
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Tailoring particles for optical trapping and micromanipulation: An overview
- 2008
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Ingår i: Piers 2008 Hangzhou: Progress in Electromagnetics Research Symposium, Vols I and Ii, Proceedings. - 9781934142004 ; , s. 864-868
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Konferensbidrag (refereegranskat)abstract
- Optical trapping and micromanipulation has developed from an interesting novelty to a powerful and widely used tool, with the capability to move or trap microscopic live biological specimens and measure forces on the order of piconewtons, typical of forces in microbiological systems. Despite this, the range of particles typically trapped or manipulated is quite small, and it is unusual to see applications involving objects other than biological specimens or homogeneous isotropic microspheres, typically polymer or silica. However, particles can be modified or specially fabricated to expand the possible applications of optical tweezers. For example, while non-absorbing homogeneous isotropic spheres cannot be rotated, optically anisotropic spheres can, and can therefore function as microscopic torque sensors, extending the usual translational micromanipulation and force measurement to rotational manipulation and torque sensing. The development of such particles has led to applications in microscale metrology and biophysics, along with potential deployment of optically-driven micro-machines in lab-on-a-chip devices. We present an overview of our work on the tailoring of microparticles for versatile optical trapping and micromanipulation. This includes approaches based on controlled chemistry - nano-assembly - and optical microfabrication. Beginning with the production of anisotropic vaterite microspheres, we review some. of the applications, and difficulties encountered along the way. Some of these difficulties can be overcome by coating of the vaterite microspheres. We also discuss the use of anti-reflection coating to allow strong trapping of high refractive index particles. The alternative strategy of producing arbitrarily shaped polymer microstructures through two-photon photopolymerization is also discussed. This can be used to produce optically-driven microrotors or structurally anisotropic microspheres to replace vaterites for particular applications.
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| 6. |
- Parkin, S. J., et al.
(författare)
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Highly birefringent vaterite microspheres: production, characterization and applications for optical micromanipulation
- 2009
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Ingår i: Optics Express. - 1094-4087. ; 17:24, s. 21944-21955
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Tidskriftsartikel (refereegranskat)abstract
- This paper reports on a simple synthesis and characterization of highly birefringent vaterite microspheres, which are composed of 20-30 nm sized nanocrystalls. Scanning electron microscopy shows a quite disordered assembly of nanocrystals within the microspheres. However, using optical tweezers, the effective birefringence of the microspheres was measured to Delta n = 0.06, which compares to Delta n = 0.1 of vaterite single crystals. This suggests a very high orientation of the nanocrystals within the microspheres. A hyperbolic model of the direction of the optical axis throughout the vaterite spherulite best fits the experimental data. Results from polarized light microscopy further confirm the hyperbolic model. (C) 2009 Optical Society of America
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| 7. |
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| 8. |
- Asavei, T., et al.
(författare)
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Engineering Optically Driven Micromachines. - art. no. 703816
- 2008
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Ingår i: Optical Trapping and Optical Micromanipulation V. - 9780819472588 ; 7038, s. 3816-3816
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Konferensbidrag (refereegranskat)abstract
- Optical forces and torques acting on microscopic objects trapped in focussed laser beams promise flexible methods of driving micromachines through a microscope cover slip or even a cell wall. We are endeavouring to engineer special purpose micro-objects for a range of tasks. Colloidal self assembly of calcium carbonate provides birefringent spheres which can exert considerable torque, while two photon polymerisation allows us to fabricate objects of arbitrary shape that can be designed to exchange both spin and orbital angular momentum. Numerical calculations of forces and torques can allow an optimal design, and optical measurements provide us with certain knowledge of the forces and torques which are actually exerted.
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| 9. |
- Settele, Josef, et al.
(författare)
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Rice ecosystem services in South-east Asia
- 2018
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Ingår i: Paddy and Water Environment. - : Springer. - 1611-2490 .- 1611-2504. ; 16:2, s. 211-224
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Tidskriftsartikel (övrigt vetenskapligt/konstnärligt)
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