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| 2. |
- Beal, Jacob, et al.
(författare)
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Robust estimation of bacterial cell count from optical density
- 2020
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Ingår i: Communications Biology. - : Springer Science and Business Media LLC. - 2399-3642. ; 3:1
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Tidskriftsartikel (refereegranskat)abstract
- Optical density (OD) is widely used to estimate the density of cells in liquid culture, but cannot be compared between instruments without a standardized calibration protocol and is challenging to relate to actual cell count. We address this with an interlaboratory study comparing three simple, low-cost, and highly accessible OD calibration protocols across 244 laboratories, applied to eight strains of constitutive GFP-expressing E. coli. Based on our results, we recommend calibrating OD to estimated cell count using serial dilution of silica microspheres, which produces highly precise calibration (95.5% of residuals <1.2-fold), is easily assessed for quality control, also assesses instrument effective linear range, and can be combined with fluorescence calibration to obtain units of Molecules of Equivalent Fluorescein (MEFL) per cell, allowing direct comparison and data fusion with flow cytometry measurements: in our study, fluorescence per cell measurements showed only a 1.07-fold mean difference between plate reader and flow cytometry data.
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| 3. |
- Cao, Rihong, et al.
(författare)
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Failure mechanism of non-persistent jointed rock-like specimens under uniaxial loading : Laboratory testing
- 2020
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Ingår i: International Journal of Rock Mechanics And Mining Sciences. - : Elsevier. - 1365-1609 .- 1873-4545. ; 132
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Tidskriftsartikel (refereegranskat)abstract
- It is generally known that discontinuities have a remarkable influence on the mechanical behaviour of rock masses. To further understand the fracture mechanisms of jointed rock masses, substantial effort has been focused on the strength anisotropy and failure characteristics of rocks/rock-like specimens containing persistent joints with different geometric parameters. However, only a few laboratory tests have considered the failure mechanism of a rock mass with 3D joints, especially for non-persistent joints with different persistence levels. In the present work, experiments on cubic rock-like specimens containing non-persistent joints (in areal extent) subjected to uniaxial compression were conducted to further investigate the influence of the joint inclination (θ) and persistence (N) on the rock mechanical properties and failure characteristics. The strength of a 3D non-persistent jointed specimen is characterized by three stages as the joint inclination angle (θ) increases from 0° to 90°. The strength of jointed specimens decreases with increasing N for all θ values, with the highest strength obtained for N = 0.42 and the lowest strength recorded for N = 0.92. Based on CT scan results, four typical fracture modes were identified: splitting, splitting + sliding, sliding, and intact failure. Overall, as the joint inclination increases, the failure mode of the specimen transforms from splitting to sliding and then to the intact failure mode. However, with decreasing joint persistence, the failure modes of some specimens will change from sliding to mixed failure (splitting + sliding).
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| 4. |
- Cao, Ri-hong, et al.
(författare)
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Failure and Mechanical Behavior of Transversely Isotropic Rock under Compression-Shear Tests : Laboratory Testing and Numerical Simulation
- 2021
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Ingår i: Engineering Fracture Mechanics. - : Elsevier. - 0013-7944 .- 1873-7315. ; 241
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Tidskriftsartikel (refereegranskat)abstract
- The failure and mechanical behavior of transversely isotropic rock are significantly affected by the original bedding planes. Until now, few studies have been performed to investigate the influence of the geometrical and mechanical parameters of the bedding planes on the fracture characteristics of transversely isotropic rocks under planar shear fracture loading conditions. For this purpose, experimental and numerical compression-shear tests on double-notched specimens are conducted to investigate the fracturing characteristics of transversely isotropic rock under planar shear fracture loading. The experimental study that focuses on the influence of bedding plane inclination on fracture load, fracture pattern and AE evolution, and six inclination angles is conducted in this study. Based on the flat joint contact model (for the rock matrix) and smooth joint contact model (for the original bedding plane) in PFC2D (particle flow code), the microscale fracturing process of transversely isotropic rock with different inclinations is simulated and analyzed. The results show that the inclination has an important influence on the fracture load and fracture pattern, and the maximum and minimum fracture loads are obtained for specimens with inclination angles of 30° and 60°, respectively. Moreover, the strength and spacing of the original bedding planes also play an important role in fracture loads. Higher bedding plane strength and wider bedding plane spacing result in higher fracture loads. In addition, with a moderate inclination angle, transversely isotropic rock with higher bedding plane strength tends to form cracks that cut through the rock matrix. However, with the decrease in the bedding plane strength, more fractures form along the bedding planes.
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| 5. |
- Chen, Jian, et al.
(författare)
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A coupled DEM-SPH model for moisture migration in unsaturated granular material under oscillation
- 2020
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Ingår i: International Journal of Mechanical Sciences. - : Elsevier. - 0020-7403 .- 1879-2162. ; 169
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Tidskriftsartikel (refereegranskat)abstract
- Granular materials, such as mineral products, soil and chemical fertilizer, normally contain unsaturated free moisture. This unsaturated moisture could migrate in the granular material and its processing, resulting in handling and safety concerns due to a change in the material properties. In this work, a method of coupling the Discrete Element Method (DEM) and the Smoothed Particle Hydrodynamics (SPH) was proposed to investigate moisture migration in unsaturated granular materials under oscillation. The particles and water were simulated through DEM and SPH, respectively and a python coupling framework was programmed to perform the exchange of particle-fluid interaction forces. Subsequently, experiments with plastic pellets and a coal sample were used to calibrate the models, with DEM calibrated by an angle of repose experiment and draining experiments calibrating the coupled model. Finally, the coupled model was validated by comparing the results to those of experiments involving moisture migration under oscillation. It was found that, compared to measurements, the coupled SPH-DEM model predicted the same moisture migration trend and also provided good agreement for the prediction of the mass of drained water.
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| 6. |
- Chen, Kuan, et al.
(författare)
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Characterization and protein engineering of glycosyltransferases for the biosynthesis of diverse hepatoprotective cycloartane-type saponins in Astragalus membranaceus
- 2023
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Ingår i: Plant Biotechnology Journal. - : John Wiley & Sons. - 1467-7644 .- 1467-7652. ; 21:4, s. 698-710
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Tidskriftsartikel (refereegranskat)abstract
- Although plant secondary metabolites are important source of new drugs, obtaining these compounds is challenging due to their high structural diversity and low abundance. The roots of Astragalus membranaceus are a popular herbal medicine worldwide. It contains a series of cycloartane-type saponins (astragalosides) as hepatoprotective and antivirus components. However, astragalosides exhibit complex sugar substitution patterns which hindered their purification and bioactivity investigation. In this work, glycosyltransferases (GT) from A. membranaceus were studied to synthesize structurally diverse astragalosides. Three new GTs, AmGT1/5 and AmGT9, were characterized as 3-O-glycosyltransferase and 25-O-glycosyltransferase of cycloastragenol respectively. AmGT1(G146V/I) variants were obtained as specific 3-O-xylosyltransferases by sequence alignment, molecular modelling and site-directed mutagenesis. A combinatorial synthesis system was established using AmGT1/5/9, AmGT1(G146V/S) and the reported AmGT8 and AmGT8(A394F). The system allowed the synthesis of 13 astragalosides in Astragalus root with conversion rates from 22.6% to 98.7%, covering most of the sugar-substitution patterns for astragalosides. In addition, AmGT1 exhibited remarkable sugar donor promiscuity to use 10 different donors, and was used to synthesize three novel astragalosides and ginsenosides. Glycosylation remarkably improved the hepatoprotective and SARS-CoV-2 inhibition activities for triterpenoids. This is one of the first attempts to produce a series of herbal constituents via combinatorial synthesis. The results provided new biocatalytic tools for saponin biosynthesis.
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| 7. |
- Cheng, Li, et al.
(författare)
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Safety and Protection Measures of Underground Non-Coal Mines with Mining Depth over 800 m: A Case Study in Shandong, China
- 2022
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Ingår i: Sustainability. - : MDPI. - 2071-1050. ; 14:20
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Tidskriftsartikel (refereegranskat)abstract
- With the increase in mining depth, the risk of ground pressure disasters in yellow gold mines is becoming more and more serious. This paper carries out a borehole test for the pressure behavior in a non-coal mining area with a mining depth of more than 800 m in the Jiaodong area. The test results show that under a depth of 1050 m, the increase in the vertical principal stress is the same as the increase in the minimum horizontal principal stress, which is about 3 MPa per 100 m. When the depth increases to 1350 m, the vertical principal stress increases by about 3% per 100 m, and the self-weight stress and the maximum horizontal principal stress maintain a steady growth rate of about 3 MPa per 100 m. In addition, based on the test results, the operation of the ground pressure monitoring system in each mine is investigated. The investigation results show that in some of the roadway and stope mines with depths of more than 800 m, varying degrees of rock mass instability have occurred, and a few mines have had sporadic slight rockbursts, accounting for about 5%. There was a stress concentration area in the lower part of the goaf formed in the early stage of mining, and slight rockburst phenomena such as rock mass ejection have occurred; meanwhile, the area stability for normal production and construction was good, and there was no obvious ground pressure. This paper compares the researched mines horizontally as well as to international high-level mines and puts forward some suggestions, including: carrying out ground pressure investigations and improving the level of intelligence, which would provide countermeasures to balance the safety risks of deep mining, reducing all kinds of safety production accidents and providing a solid basis for risk prevention and supervision.
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| 8. |
- Han, Dongya, et al.
(författare)
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Evolution of nonlinear elasticity and crack damage of rock joint under cyclic tension
- 2020
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Ingår i: International Journal of Rock Mechanics And Mining Sciences. - : Elsevier. - 1365-1609 .- 1873-4545. ; 128
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Tidskriftsartikel (refereegranskat)abstract
- Similar to the damage zone in the vicinity of faults, rock joints are composed of single or multiple fracture process zones, highlighting a high crack density and a decrease of Young’s modulus. Here specimens of limestone joint and granite joint were subjected to cyclic tensile stress of increasing amplitudes, up to failure. The cyclic tension tests were to study the elasticity and crack density adjacent to rock joints. Results show that the vast majority of tensile strain accommodates in the vicinity of rock joint, and rock joints have a nonlinear mechanical behavior during loading while a nearly linear behavior during unloading in the tensile stress-strain curves. A gradual reduction in Young’s modulus is seen with the increase of tensile strain. The cumulative crack damage after each stress cycle also induces a decrease in Young’s modulus. A stiffer response is found when switching from loading to unloading. During the unloading, a recovery in tensile strain and crack damage is observed, but some unrecoverable damage remains in the rock joint sample after each loading-unloading cycle. Based on the differential scheme, a constitutive model using two crack-related parameters, i.e., initial crack density and crack density increment, is developed. The model can give a micromechanical explanation and well reproduce the nonlinearity and hysteresis of tensile stress-strain curves.
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| 9. |
- Kristanl, Matej, et al.
(författare)
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The Seventh Visual Object Tracking VOT2019 Challenge Results
- 2019
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Ingår i: 2019 IEEE/CVF INTERNATIONAL CONFERENCE ON COMPUTER VISION WORKSHOPS (ICCVW). - : IEEE COMPUTER SOC. - 9781728150239 ; , s. 2206-2241
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Konferensbidrag (refereegranskat)abstract
- The Visual Object Tracking challenge VOT2019 is the seventh annual tracker benchmarking activity organized by the VOT initiative. Results of 81 trackers are presented; many are state-of-the-art trackers published at major computer vision conferences or in journals in the recent years. The evaluation included the standard VOT and other popular methodologies for short-term tracking analysis as well as the standard VOT methodology for long-term tracking analysis. The VOT2019 challenge was composed of five challenges focusing on different tracking domains: (i) VOT-ST2019 challenge focused on short-term tracking in RGB, (ii) VOT-RT2019 challenge focused on "real-time" short-term tracking in RGB, (iii) VOT-LT2019 focused on long-term tracking namely coping with target disappearance and reappearance. Two new challenges have been introduced: (iv) VOT-RGBT2019 challenge focused on short-term tracking in RGB and thermal imagery and (v) VOT-RGBD2019 challenge focused on long-term tracking in RGB and depth imagery. The VOT-ST2019, VOT-RT2019 and VOT-LT2019 datasets were refreshed while new datasets were introduced for VOT-RGBT2019 and VOT-RGBD2019. The VOT toolkit has been updated to support both standard short-term, long-term tracking and tracking with multi-channel imagery. Performance of the tested trackers typically by far exceeds standard baselines. The source code for most of the trackers is publicly available from the VOT page. The dataset, the evaluation kit and the results are publicly available at the challenge website(1).
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| 10. |
- Li, Kaihui, et al.
(författare)
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Three‐dimensional discrete element simulation of indirect tensile behaviour of a transversely isotropic rock
- 2020
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Ingår i: International Journal for Numerical and Analytical Methods in Geomechanics. - : John Wiley & Sons. - 0363-9061 .- 1096-9853. ; 44:13, s. 1812-1832
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Tidskriftsartikel (refereegranskat)abstract
- This paper presents the development of a three‐dimensional discrete element model using flat‐joint and smooth‐joint contact models to investigate the effect of anisotropy on the tensile behaviour of slate, a transversely isotropic rock, under Brazilian testing from both macro and microscales. The effect of anisotropy is further realised by exploring the influence of foliation orientations (β and ψ ) on the tensile strength, fracture pattern, microcracking and stress distribution of the transversely isotropic rock. The variation of tensile strength with foliation orientation is presented. The cross‐weak‐plane fracture growth observed in laboratory is reproduced, and the criterion for which to form is also given from the aspect of foliation orientation. Furthermore, the proportional variations of microcracks well account for the effects of foliation orientation on the tensile strength and failure pattern. Finally, it is found that the existence of weak planes increases both the heterogeneity and the anisotropy of stress distributions within the transversely isotropic rock, with the degree of influence varying with the foliation orientation.
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