| 1. |
- Schoch, C. L., et al.
(författare)
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A class-wide phylogenetic assessment of Dothideomycetes
- 2009
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Ingår i: Studies in mycology. - : Westerdijk Fungal Biodiversity Institute. - 0166-0616 .- 1872-9797. ; 64, s. 1-15
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Forskningsöversikt (refereegranskat)abstract
- We present a comprehensive phylogeny derived from 5 genes, nucSSU, nucLSU rDNA, TEF1, RPB1 and RPB2, for 356 isolates and 41 families (six newly described in this volume) in Dothideomycetes. All currently accepted orders in the class are represented for the first time in addition to numerous previously unplaced lineages. Subclass Pleosporomycetidae is expanded to include the aquatic order Jahnulales. An ancestral reconstruction of basic nutritional modes supports numerous transitions from saprobic life histories to plant associated and lichenised modes and a transition from terrestrial to aquatic habitats are confirmed. Finally, a genomic comparison of 6 dothideomycete genomes with other fungi finds a high level of unique protein associated with the class, supporting its delineation as a separate taxon.
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| 2. |
- Muggia, L, et al.
(författare)
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Molecular data confirm the position of Flakea papillata in the Verrucariaceae
- 2009
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Ingår i: The Bryologist. - : American Bryological and Lichenological Society. - 0007-2745 .- 1938-4378. ; 112:3, s. 538-543
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Tidskriftsartikel (refereegranskat)abstract
- Flakea papillata is a predominantly tropical, widespread lichen characterized by flake-like thalli of narrowly arranged, irregularly wrinkled, small bluish-green lobes, whose taxonomic position was unclear. The lichen shows superficial similarity with either algal colonies, bryophytes or fern prothallia, but the production of zeorin and other triterpenoids supports its inclusion in the ascomycetes. Analysis of the nuclear large and small subunits rRNA sequence data of samples from different origins supports the position of F. papillata within the Verrucariaceae: it forms its own supported clade not related to the core of Agonimia, in which it has been previously placed.
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| 3. |
- Resl, P., et al.
(författare)
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Large differences in carbohydrate degradation and transport potential in the genomes of lichen fungal symbionts
- 2022
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Ingår i: Nature Communications. - : Springer Science and Business Media LLC. - 2041-1723. ; 13
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Tidskriftsartikel (refereegranskat)abstract
- Lichen symbioses are thought to be stabilized by the transfer of fixed carbon from a photosynthesizing symbiont to a fungus. In other fungal symbioses, carbohydrate subsidies correlate with reductions in plant cell wall-degrading enzymes, but whether this is true of lichen fungal symbionts (LFSs) is unknown. Here, we predict genes encoding carbohydrate-active enzymes (CAZymes) and sugar transporters in 46 genomes from the Lecanoromycetes, the largest extant clade of LFSs. All LFSs possess a robust CAZyme arsenal including enzymes acting on cellulose and hemicellulose, confirmed by experimental assays. However, the number of genes and predicted functions of CAZymes vary widely, with some fungal symbionts possessing arsenals on par with well-known saprotrophic fungi. These results suggest that stable fungal association with a phototroph does not in itself result in fungal CAZyme loss, and lends support to long-standing hypotheses that some lichens may augment fixed CO2 with carbon from external sources.
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