| 1. |
- Corbett, Thomas, et al.
(författare)
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Organic carbon source controlled microbial olivine dissolution in small-scale flow-through bioreactors, for CO2 removal
- 2024
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Ingår i: NPJ MATERIALS DEGRADATION. - : Nature Publishing Group. - 2397-2106. ; 8:1
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Tidskriftsartikel (refereegranskat)abstract
- The development of carbon dioxide removal methods, coupled with decreased CO2 emissions, is fundamental to achieving the targets outlined in the Paris Agreement limiting global warming to 1.5 degrees C. Here we are investigating the importance of the organic carbon feedstock to support silicate mineral weathering in small-scale flow through bioreactors and subsequent CO2 sequestration. Here, we combine two bacteria and two fungi, widely reported for their weathering potential, in simple flow through bioreactors (columns) consisting of forsterite and widely available, cheap organic carbon sources (wheat straw, bio-waste digestate of pig manure and biowaste, and manure compost), over six weeks. Compared to their corresponding abiotic controls, the inoculated straw and digestate columns release more total alkalinity (similar to 2 times more) and produce greater dissolved and solid inorganic carbon (29% for straw and 13% for digestate), suggesting an increase in CO2 sequestration because of bio-enhanced silicate weathering. Microbial biomass is higher in the straw columns compared to the digestate and manure compost columns, with a phospholipid fatty acid derived total microbial biomass 10 x greater than the other biotic columns. Scanning Electron Microscopy imaging shows the most extensive colonisation and biofilm formation on the mineral surfaces in the straw columns. The biotic straw and digestate columns sequester 50 and 14 mg C more than their abiotic controls respectively, while there is no difference in the manure columns. The selection of organic carbon sources to support microbial communities in the flow through bioreactors controlls the silicate weathering rates and CO2 sequestration.
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| 2. |
- Kopacz, Nina, et al.
(författare)
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A Study in Blue : Secondary Copper-Rich Minerals and Their Associated Bacterial Diversity in Icelandic Lava Tubes
- 2022
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Ingår i: Earth and Space Science. - : American Geophysical Union (AGU). - 2333-5084. ; 9:5
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Tidskriftsartikel (refereegranskat)abstract
- Lava tubes on Mars hold exciting potential for the preservation of biosignatures, which may survive on geological timescales in these isolated, stable environments. To support the development of future astrobiological mission concepts, we turn to terrestrial lava tubes, host to a variety of microbial communities and secondary minerals. Following a multidisciplinary sampling protocol, we retrieved biological, molecular, and mineralogical data from several lava tubes in Iceland. We report on blue-colored copper-rich secondary minerals and their associated bacterial communities using a multi-method approach, and an amalgam of 16S rRNA gene sequencing, Raman spectroscopy, scanning electron microscopy, and energy-dispersive X-ray spectroscopy data sets. We found numerous bacterial genera known for their high metal resistance and ability to survive in low-nutrient environments. Both are characteristics to be expected for any potential life in Martian lava tubes, and should be considered when checking for contaminants in Mars mission preparations. Associated with the microbial mats, we identified several types of copper-rich secondary minerals, indicating localized copper enrichments in the groundwater, possibly stemming from overlying ash deposits and nearby hyaloclastite formations. Molecular analysis revealed carotenoid signals preserved within the copper speleothems. If found in Martian lava tubes, blue copper-rich mineral precipitates would be deserving of astrobiological investigation, as they have potential to preserve biosignatures and harbor life. Plain Language Summary Subterranean lava tubes on Mars are exciting locations to study in the potential discovery of signs of life outside of Earth, as the surface of Mars does not have conditions conducive to the preservation of life as we know it. In order to better study these Martian environments we look first to comparable lava tubes on Earth. Within Icelandic lava tubes we found blue-colored copper minerals, host to microbial life. The microbes that thrive in these caves are able to withstand extreme conditions, and leave behind detectable molecular traces indicative of life, a type of biosignature. Using a variety of tools and techniques, we describe the nature of the blue minerals and their provenance, the role of the microbial populations within them, and the value of the molecular traces as biosignatures. We discuss the potential for such minerals and microbes in Martian lava tubes, and how we might successfully sample them in future missions to Mars.
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| 3. |
- Calogiuri, Tullia, et al.
(författare)
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Design and Construction of an Experimental Setup to Enhance Mineral Weathering through the Activity of Soil Organisms
- 2023
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Ingår i: Journal of Visualized Experiments. - : Journal of Visualized Experiments. - 1940-087X. ; :201
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Tidskriftsartikel (refereegranskat)abstract
- Enhanced weathering (EW) is an emerging carbon dioxide (CO2) removal technology that can contribute to climate change mitigation. This technology relies on accelerating the natural process of mineral weathering in soils by manipulating the abiotic variables that govern this process, in particular mineral grain size and exposure to acids dissolved in water. EW mainly aims at reducing atmospheric CO2 concentrations by enhancing inorganic carbon sequestration. Until now, knowledge of EW has been mainly gained through experiments that focused on the abiotic variables known for stimulating mineral weathering, thereby neglecting the potential influence of biotic components. While bacteria, fungi, and earthworms are known to increase mineral weathering rates, the use of soil organisms in the context of EW remains underexplored. This protocol describes the design and construction of an experimental setup developed to enhance mineral weathering rates through soil organisms while concurrently controlling abiotic conditions. The setup is designed to maximize weathering rates while maintaining soil organisms' activity. It consists of a large number of columns filled with rock powder and organic material, located in a climate chamber and with water applied via a downflow irrigation system. Columns are placed above a fridge containing jerrycans to collect the leachate. Representative results demonstrate that this setup is suitable to ensure the activity of soil organisms and quantify their effect on inorganic carbon sequestration. Challenges remain in minimizing leachate losses, ensuring homogeneous ventilation through the climate chamber, and avoiding flooding of the columns. With this setup, an innovative and promising approach is proposed to enhance mineral weathering rates through the activity of soil biota and disentangle the effect of biotic and abiotic factors as drivers of EW.
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| 4. |
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| 5. |
- Holm, Nils, 1948-, et al.
(författare)
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Reduction of nitrogen compounds i oceanic basemet and its implications for HCN formation and abiotic organic synthesis
- 2009
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Ingår i: Geochemical Transactions. - : BioMed Central Ltd. - 1467-4866. ; 10:9
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Tidskriftsartikel (refereegranskat)abstract
- Hydrogen cyanide is an excellent organic reagent and is central to most of the reaction pathways leading to abiotic formation of simple organic compounds containing nitrogen, such as amino acids, purines and pyrimidines. Reduced carbon and nitrogen precursor compounds for the synthesis of HCN may be formed under off-axis hydrothermal conditions in oceanic lithosphere in the presence of native Fe and Ni and are adsorbed on authigenic layer silicates and zeolites. The native metals as well as the molecular hydrogen reducing CO2 to CO/CH4 and NO3-/NO2- to NH3/NH4+ are a result of serpentinization of mafic rocks. Oceanic plates are conveyor belts of reduced carbon and nitrogen compounds from the off-axis hydrothermal environments to the subduction zones, where compaction, dehydration, desiccation and diagenetic reactions affect the organic precursors. CO/CH4 and NH3/NH4+ in fluids distilled out of layer silicates and zeolites in the subducting plate at an early stage of subduction will react upon heating and form HCN, which is then available for further organic reactions to, for instance, carbohydrates, nucleosides or even nucleotides, under alkaline conditions in hydrated mantle rocks of the overriding plate. Convergent margins in the initial phase of subduction must, therefore, be considered the most potent sites for prebiotic reactions on Earth. This means that origin of life processes are, perhaps, only possible on planets where some kind of plate tectonics occur.
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| 6. |
- Huld, Sigrid, et al.
(författare)
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Chemical Gardens Mimic Electron Paramagnetic Resonance Spectra and Morphology of Biogenic Mn Oxides
- 2023
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Ingår i: Astrobiology. - : Mary Ann Liebert. - 1531-1074 .- 1557-8070. ; 23:1, s. 24-32
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Tidskriftsartikel (refereegranskat)abstract
- Manganese (Mn) oxides are ubiquitous in nature and occur as both biological and abiotic minerals, but empirically distinguishing between the two remains a problem. Recently, electron paramagnetic resonance (EPR) spectroscopy has been proposed for this purpose. It has been reported that biogenic Mn oxides display a characteristic narrow linewidth in contrast to their pure abiotic counterparts, which is explained in part by the large number of cation vacancies that form within the layers of biogenic Mn oxides. It was, therefore, proposed that natural samples that display a narrow EPR linewidth, delta H-pp < 580G, could be assigned to a biogenic origin. However, in poorly crystalline or amorphous solids, both dipolar broadening and exchange narrowing simultaneously determine the linewidth. Considering that the spectral linewidth is governed by several mechanisms, this approach might be questioned. In this study, we report synthetic chemical garden Mn oxide biomorphs that exhibit both morphologically life-like structures and narrow EPR linewidths, suggesting that a narrow EPR line may be unsuitable as reliable evidence in assessment of biogenicity. Key Words: Mn oxides & mdash;EPR & mdash;Chemical gardens & mdash;Biomorphs. Astrobiology 23, 24-32.
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| 7. |
- Huld, Sigrid, et al.
(författare)
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Experimental mineralisation in carbonate, phosphate, and silicate of the filamentous hydrogenotrophic methanogen Methanobacterium oryzae
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Annan publikation (övrigt vetenskapligt/konstnärligt)abstract
- Methanogens are thought to be some of the most ancient organisms to have lived on Earth. Fossils of ancient mineralised filamentous forms have been described before from hydrothermal vents to sediments. The peculiarity of Archaea lies in their cell walls, where they lack the peptidoglycan layer found in Bacteria and instead have a proteinaceous S-layer that has been shown to promote mineralisation through the presence of charged polymers on the cell surface. Some methanogens, like the filamentous Methanobacterium oryzae do not have an S-layer but a cell wall made of pseudomurein, similar in structure to bacterial murein. In this work, experimental mineralisation with carbonate, phosphate, and silica on a strain of M. oryzae were analysed. Differences in the degree of morphological preservation in the various fossilisation agents were observed over a period of 3 months and chemical analyses using EDX and XRD were carried out on precipitates. Results indicate that the various minerals precipitate differently in association with the methanogens and only silica replicates the morphology with a relatively high degree of fidelity. This shows the presence of possible taphonomic biases in the rock record depending on mineralisation, size differences, and cell wall structure. Therefore, this work has important outcomes for the recognition of filamentous fossils in the rock record and on the different mineralisation mechanisms on early Earth.
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| 8. |
- Huld, Sigrid
(författare)
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Untangling ambiguities in the microbial fossil record : experimental abiotic and biological approaches
- 2023
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Licentiatavhandling (övrigt vetenskapligt/konstnärligt)abstract
- Life on early earth has long been the topic of discussion for many researchers: how did it come to be? Which cells came first? Where can we find them? The most ancient rocks on our planet may hold some of the answers to these questions, but many may only be answered in laboratories. Chemical and morphological traces can be found from Archaean deposits, tantalisingly similar to modern day prokaryotes. Often, they are interpreted as the fossilised remains of bacteria or archaea. However, the caveat remains the abiotic mechanisms with which many similar traces and markers can be formed. The purpose of this thesis was to look into the similarities and differences in abiotic and biological formation of filamentous structures in rocks and observe whether there are chemical or morphological factors that allow for distinguishing between the two. Various laboratory methods were used: chemical gardens to form filamentous abiotic structures and experimental mineralisation of a filamentous methanogen in carbonate, phosphate, and silicate in order to compare and contrast the various mineralisation mechanisms in the fidelity of preservation of the microbes. In the former experiment, analysis with electron paramagnetic resonance (EPR) spectroscopy was carried out to identify potential chemical biomarkers. A combination of scanning and transmission electron microscopy, energy dispersive X-ray (EDX) analysis, X-ray diffraction (XRD) and Raman spectroscopy were also used to analyse the minerals and precipitates formed in both sets of experiments. The results of this research indicate that morphology of filamentous structures and the chemical signatures in biominerals may not be reliable as biogenic indicators. Furthermore, the work on experimental mineralisation reveals the possible biases in the rock record of microbial preservation which is highly dependent on the structure of the cell wall, chemistry of the environment, and the mineral formed. Finally, this work has important outcomes for the search for biomarkers on earth and on other planets and for the recognition of pseudofossils versus microbial fossils in the rock record.
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| 9. |
- Ivarsson, Magnus, et al.
(författare)
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Introducing palaeolithobiology
- 2021
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Ingår i: GFF. - London : Taylor & Francis. - 1103-5897 .- 2000-0863. ; 143:2-3, s. 305-319
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Tidskriftsartikel (refereegranskat)abstract
- A growing literature of deep but also surficial fossilized remains of lithobiological life, often associated with igneous rocks, necessitates the unfolding of a sub-discipline within paleobiology. Here, we introduce the term paleolithobiology as the new auxiliary sub-discipline under which fossilized lithobiology should be handled. We present key criteria that distinguish the paleolithobiological archive from the traditional one and discuss sample strategies as well as scientific perspectives. A majority of paleolithobiological material consists of deep biosphere fossils, and in order to highlight the relevance of these, we present new data on fungal fossils from the Lockne impact crater. Fungal fossils in the Lockne drill cores have been described previously but here we provide new insights into the presence of reproductive structures that indicate the fungi to be indigenous. We also show that these fungi frequently dissolve and penetrate secondary calcite, delineating the role lithobionts plays in geobiological cycles. We hope that the formalization of the sub-discipline paleolithobiology will not only highlight an overlooked area of paleobiology as well as simplify future studies of endo- and epilithic fossil material, but also improve our understanding of the history of the deep biosphere.
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| 10. |
- Lima-Zaloumis, Jon, et al.
(författare)
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Microbial biosignature preservation in carbonated serpentine from the Samail Ophiolite, Oman
- 2022
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Ingår i: Communications Earth & Environment. - London : Nature Publishing Group. - 2662-4435. ; 3:1
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Tidskriftsartikel (refereegranskat)abstract
- Serpentinization is a geological process involving the interaction of water and ultramafic rock, the chemical byproducts of which can serve as an energy source for microbial communities. Although serpentinite systems are known to host active microbial life, it is unclear to what extent fossil evidence of these communities may be preserved over time. Here we report the detection of biosignatures preserved in a mineralized fracture within drill cores from the Samail Ophiolite in Oman. Two varieties of filamentous structures were identified in association with iron oxide precipitates. The first type are interpreted as likely microbial remains, while the second type are recognized as potentially microbiological dubiofossils. Additionally, laminated structures composed of carbon and nitrogen rich material were identified and interpreted as having a microbially-associated origin. Our observations affirm the potential to detect subsurface microbial communities within serpentinizing environments and highlight a unique taphonomic window to preserve evidence of rock-hosted life.
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