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- 2019
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Tidskriftsartikel (refereegranskat)
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| 2. |
- Backmark, Anna, 1979, et al.
(författare)
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Affinity tags can reduce merohedral twinning of membrane protein crystals
- 2008
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Ingår i: Acta Crystallographica. Section D: Biological Crystallography. - 1399-0047 .- 0907-4449. ; D64, s. 1183-1186
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Tidskriftsartikel (refereegranskat)abstract
- This work presents a comparison of the crystal packing of three eukaryotic membrane proteins: human aquaporin 1, human aquaporin 5 and a spinach plasma membrane aquaporin. All were purified from expression constructs both with and without affinity tags. With the exception of tagged aquaporin 1, all constructs yielded crystals. Two significant effects of the affinity tags were observed: crystals containing a tag typically diffracted to lower resolution than those from constructs encoding the protein sequence alone and constructs without a tag frequently produced crystals that suffered from merohedral twinning. Twinning is a challenging crystallographic problem that can seriously hinder solution of the structure. Thus, for integral membrane proteins, the addition of an affinity tag may help to disrupt the approximate symmetry of the protein and thereby reduce or avoid merohedral twinning.
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| 3. |
- Horsefield, Rob, 1977, et al.
(författare)
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High-resolution x-ray structure of human aquaporin 5
- 2008
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Ingår i: Proceedings of the National Academy of Sciences. - : Proceedings of the National Academy of Sciences. - 1091-6490 .- 0027-8424. ; 105:36, s. 13327-13332
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Tidskriftsartikel (refereegranskat)abstract
- Human aquaporin 5 (HsAQP5)facilitates the transport of water across plasma membranes and has been identified within cells of the stomach, duodenum, pancreas, airways, lungs, salivary glands, sweat glands, eyes, lacrimal glands, and the inner ear. AQP5, like AQP2, is subject to posttranslational regulation by phosphorylation, at which point it is trafficked between intracellular storage compartments and the plasma membrane. Details concerning the molecular mechanism of membrane trafficking are unknown. Here we report the x-ray structure of HsAQP5 to 2.0-angstrom resolution and highlight structural similarities and differences relative to other eukaryotic aquaporins. A lipid occludes the putative central pore, preventing the passage of gas or ions through the center of the tetramer. Multiple consensus phosphorylation sites are observed in the structure and their potential regulatory role is discussed. We postulate that a change in the conformation of the C terminus may arise from the phosphorylation of AQP5 and thereby signal trafficking.
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| 4. |
- Ovaskainen, Otso, et al.
(författare)
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Global Spore Sampling Project: A global, standardized dataset of airborne fungal DNA
- 2024
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Ingår i: Scientific Data. - 2052-4463. ; 11
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Tidskriftsartikel (refereegranskat)abstract
- Novel methods for sampling and characterizing biodiversity hold great promise for re-evaluating patterns of life across the planet. The sampling of airborne spores with a cyclone sampler, and the sequencing of their DNA, have been suggested as an efficient and well-calibrated tool for surveying fungal diversity across various environments. Here we present data originating from the Global Spore Sampling Project, comprising 2,768 samples collected during two years at 47 outdoor locations across the world. Each sample represents fungal DNA extracted from 24 m3 of air. We applied a conservative bioinformatics pipeline that filtered out sequences that did not show strong evidence of representing a fungal species. The pipeline yielded 27,954 species-level operational taxonomic units (OTUs). Each OTU is accompanied by a probabilistic taxonomic classification, validated through comparison with expert evaluations. To examine the potential of the data for ecological analyses, we partitioned the variation in species distributions into spatial and seasonal components, showing a strong effect of the annual mean temperature on community composition.
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| 6. |
- Agemark, Maria, et al.
(författare)
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Reconstitution of water channel function and 2D-crystallization of human aquaporin 8.
- 2012
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Ingår i: Biochimica et Biophysica Acta. - : Elsevier BV. - 0006-3002 .- 0005-2736. ; 1818:3, s. 839-850
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Tidskriftsartikel (refereegranskat)abstract
- Among the thirteen human aquaporins (AQP0-12), the primary structure of AQP8 is unique. By sequence alignment it is evident that mammalian AQP8s form a separate subfamily distinct from the other mammalian aquaporins. The constriction region of the pore determining the solute specificity deviates in AQP8 making it permeable to both ammonia and H(2)O(2) in addition to water. To better understand the selectivity and gating mechanism of aquaporins, high-resolution structures are necessary. So far, the structure of one human aquaporin (HsAQP5) has been solved at atomic resolution. For mammalian aquaporins in general, high-resolution structures are only available for those belonging to the water-specific subfamily (including HsAQP5). Thus, it is of interest to solve structures of other aquaporin subfamily members with different solute specificities. To achieve this the aquaporins need to be overexpressed heterologously and purified. Here we use the methylotrophic yeast Pichia pastoris as a host for the overexpression. A wide screen of different detergents and detergent-lipid combinations resulted in the solubilization of functional human AQP8 protein and in well-ordered 2D crystals. It also became evident that removal of amino acids constituting affinity tags was crucial to achieve highly ordered 2D crystals diffracting to 3Å.
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| 7. |
- Amin, Awin, et al.
(författare)
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Patient-reported participation in hepatopancreatobiliary surgery cancer care : A pilot intervention study with patient-owned fast-track protocols
- 2022
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Ingår i: European Journal of Cancer Care. - : Wiley. - 0961-5423 .- 1365-2354. ; 31:3
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Tidskriftsartikel (refereegranskat)abstract
- Objective Fast-track concepts have been implemented in hepatopancreatobiliary surgery cancer care to improve postoperative recovery. For optimal postoperative care, patient participation is also required. The aim was to investigate and analyse whether an intervention with patient-owned fast-track protocols (PFTPs) may lead to increased patient participation and improve information for patients who underwent surgery for hepatopancreatobiliary cancer. Methods A quantitative comparative design with a control and intervention group was used. The participants in the intervention group followed a PFTP during their admission. After discharge, the patients answered a questionnaire regarding patient participation. Data analyses were performed with descriptive statistics and ANCOVA. Results The results are based on a total of 222 completed questionnaires: 116 in the control group and 106 in the intervention group. It is uncertain whether the PFTP increased patient participation and information, but its use may indicate an improvement for the patient group. Conclusion A successful implementation strategy for the use of PFTP, with daily reconciliations, could be part of the work required to improve overall satisfaction with patient participation.
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| 10. |
- Boork, Magdalena, et al.
(författare)
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Innemiljö i nytt ljus : metoder för objektiv bedömning av belysning
- 2017
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Rapport (övrigt vetenskapligt/konstnärligt)abstract
- Nuvarande belysningsstandarder baseras enbart på tekniska krav, såsom ljusstyrka, jämnhet och luminans. Att även inkludera upplevelsebaserade krav skulle troligen främja bättre ljuskomfort, men även mer energieffektiva ljusmiljöer och produkter. Kunskapen om hur upplevda belysningsparametrar kan beskrivas är dock begränsad. Detta hämmar fastighetsägare och brukare att precisera önskvärda ljusmiljöer, liksom belysningstillverkare att utveckla produkter för nya marknader och tillämpningar. Syftet med detta forskningsprojekt var att utveckla och tillämpa sensoriska metoder på belysning. Till skillnad från tidigare metoder möjliggör sensoriska metoder objektiva bedömningar av upplevda belysningsparametrar.En analytisk panel bestående av åtta personer som uppfyller särskilda urvalskriterier rekryterades och tränades att bedöma belysningsprodukter i ett multisensoriskt laboratorium på SP Sveriges Tekniska Forskningsinstitut i Borås. Metodutvecklingen fokuserade särskilt på en effektiv träningsprocedur, hantering av ögats adaption, samt bedömning av färg och skuggningar. Förutom laboratorie-försök undersöktes möjligheten att genomföra analytiska bedömningar i en verklig kontext med samma försöksuppställning och panel.Resultaten visar att det är möjligt att använda sensorisk metodik för att genomföra objektiva belysningsbedömningar av armaturer; paneldeltagarna kunde skilja mellan attribut och prover. Signifikanta skillnader identifierades mellan de olika armaturerna, både i form av sensoriska och fysikaliska egenskaper såsom läsbarhet och bländning. Fysikaliska och sensoriska parametrar samvarierar dock inte alltid, vilket visar att fysikaliska och sensoriska mätningar ger kompletterande information om belysningskvalitet. Vidare visade bedömningsförsök i en verklig kontext att samma resultat uppnåddes som i laboratoriet, men med lägre signifikans, vilket verifierar metodens tillämpbarhet på belysning.Den genererade kunskapen väntas på sikt bidra till utveckling av verktyg som stödjer kommunikationen mellan olika professioner inom ljusdesign och planering och på så vis främja mer önskvärda och energieffektiva ljusmiljöer.
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