1. |
- Amundin, Mats, et al.
(författare)
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Estimating the abundance of the critically endangered Baltic Proper harbour porpoise (Phocoena phocoena) population using passive acoustic monitoring
- 2022
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Ingår i: Ecology and Evolution. - : Wiley. - 2045-7758. ; 12:2
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Tidskriftsartikel (refereegranskat)abstract
- Knowing the abundance of a population is a crucial component to assess its conservationstatus and develop effective conservation plans. For most cetaceans, abundanceestimation is difficult given their cryptic and mobile nature, especially when thepopulation is small and has a transnational distribution. In the Baltic Sea, the numberof harbour porpoises (Phocoena phocoena) has collapsed since the mid-20thcenturyand the Baltic Proper harbour porpoise is listed as Critically Endangered by the IUCNand HELCOM; however, its abundance remains unknown. Here, one of the largestever passive acoustic monitoring studies was carried out by eight Baltic Sea nationsto estimate the abundance of the Baltic Proper harbour porpoise for the first time. Bylogging porpoise echolocation signals at 298 stations during May 2011–April2013,calibrating the loggers’ spatial detection performance at sea, and measuring the clickrate of tagged individuals, we estimated an abundance of 71–1105individuals (95% CI,point estimate 491) during May–Octoberwithin the population's proposed managementborder. The small abundance estimate strongly supports that the Baltic Properharbour porpoise is facing an extremely high risk of extinction, and highlights theneed for immediate and efficient conservation actions through international cooperation.It also provides a starting point in monitoring the trend of the populationabundance to evaluate the effectiveness of management measures and determine itsinteractions with the larger neighboring Belt Sea population. Further, we offer evidencethat design-basedpassive acoustic monitoring can generate reliable estimatesof the abundance of rare and cryptic animal populations across large spatial scales.
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2. |
- Carlén, Ida, et al.
(författare)
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Basin-scale distribution of harbour porpoises in the Baltic Sea provides basis for effective conservation actions
- 2018
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Ingår i: Biological Conservation. - : Elsevier BV. - 0006-3207 .- 1873-2917. ; 226, s. 42-53
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Tidskriftsartikel (refereegranskat)abstract
- Knowledge on spatial and seasonal distribution of species is crucial when designing protected areas and implementing management actions. The Baltic Proper harbour porpoise (Phocoena phocoena) population is critically endangered, and its distribution is virtually unknown. Here, we used passive acoustic monitoring and species distribution models to describe the spatial and seasonal distribution of harbour porpoises in the Baltic Proper. Porpoise click detectors were deployed over a systematic grid of 297 stations in eight countries from April 2011 through July 2013. Generalized additive models were used to describe the monthly probability of detecting porpoise clicks as a function of spatially-referenced covariates and time. During the reproductive season, two main areas of high probability of porpoise detection were identified. One of those areas, situated on and around the offshore banks in the Baltic Proper, is clearly separated from the known distribution range of the Belt Sea population during breeding season, suggesting this is an important breeding ground for the Baltic Proper population. We commend the designation of this area as a marine protected area and recommend Baltic Sea countries to also protect areas in the southern Baltic Sea and the Hand Bight where additional important harbour porpoise habitats were identified. Further conservation measures should be carried out based on analyses of overlap between harbour porpoise distribution and potentially harmful anthropogenic activities. Our study shows that large-scale systematic monitoring using novel techniques can give important insights on the distribution of low-density populations, and that international cooperation is pivotal when studying transnationally migratory species.
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3. |
- Celemín, Enrique, et al.
(författare)
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Evolutionary history and seascape genomics of Harbour porpoises (Phocoena phocoena) across environmental gradients in the North Atlantic and adjacent waters
- 2023
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Ingår i: Molecular Ecology Resources. - 1755-098X .- 1755-0998.
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Tidskriftsartikel (refereegranskat)abstract
- The Harbour porpoise (Phocoena phocoena) is a highly mobile cetacean species primarily occurring in coastal and shelf waters across the Northern hemisphere. It inhabits heterogeneous seascapes broadly varying in salinity and temperature. Here, we produced 74 whole genomes at intermediate coverage to study Harbour porpoise's evolutionary history and investigate the role of local adaptation in the diversification into subspecies and populations. We identified ~6 million high quality SNPs sampled at eight localities across the North Atlantic and adjacent waters, which we used for population structure, demographic and genotype–environment association analyses. Our results suggest a genetic differentiation between three subspecies (P.p. relicta, P.p. phocoena and P.p. meridionalis), and three distinct populations within P.p. phocoena: Atlantic, Belt Sea and Proper Baltic Sea. Effective population size and Tajima's D suggest population contraction in Black Sea and Iberian porpoises, but expansion in the P.p. phocoena populations. Phylogenetic trees indicate post-glacial colonization from a southern refugium. Genotype–environment association analysis identified salinity as major driver in genomic variation and we identified candidate genes putatively underlying adaptation to different salinity. Our study highlights the value of whole genome resequencing to unravel subtle population structure in highly mobile species, shows how strong environmental gradients and local adaptation may lead to population differentiation, and how neutral and adaptive markers can give different perspectives on population subdivision. The results have great conservation implications as we found inbreeding and low genetic diversity in the endangered Black Sea subspecies and identified the critically endangered Proper Baltic Sea porpoises as a separate population.
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4. |
- Galatius, Anders, et al.
(författare)
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Grey seal Halichoerus grypus recolonisation of the southern Baltic Sea, Danish Straits and Kattegat
- 2020
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Ingår i: Wildlife Biology. - : Wiley. - 0909-6396 .- 1903-220X. ; :4
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Tidskriftsartikel (refereegranskat)abstract
- The grey seal became locally extinct in the southern Baltic Sea, Danish Straits and Kattegat in the early 1900s after prolonged culling campaigns. Here, we combine national monitoring and anecdotal data from Denmark, Sweden, Germany and Poland to report on the grey seal's recolonisation of those areas and the initial reestablishment of breeding colonies. Grey seal occurrence has steadily increased since year 2003 as evidenced by the coordinated Baltic Sea moult censuses. At the first census in 2003, there were 146 grey seals along the southern Baltic coasts of Sweden and Denmark, ca 1% of the total Baltic Sea population count. Since 2015, this has increased to 2000–2600 grey seals, or ca 7% of the total population count. Since the local extinction, there have been sporadic breeding events in the 1940s on sea ice around Bornholm and in the 1980s and 1990s on haul-outs in Kattegat. In 2003, the first two pups in the southern Baltic Sea were recorded at Rødsand, Denmark. This is to date the only site in the southern Baltic Sea with regular annual pupping since the recolonisation. Since 2000, there have also been sporadic breeding events in Danish Kattegat, southern Sweden, Poland and Germany. At Rødsand, there have been at least 3–10 pups recorded every year since initiation of monitoring in 2011, with an increasing tendency until 2017 with 10 pups counted, which subsequently decreased to 5–6 pups annually in 2018–2020. Compared to recolonising events in the Atlantic, the numbers of pups are low. This may be caused by differences in population dynamics, recolonisation distances, habitat and mortality and effects of rehabilitation programmes. It is likely that the breeding distribution will spread throughout the southern Baltic, Danish Straits and Kattegat if appropriate protection measures of seals and haul-outs are installed.
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5. |
- Lah, Ljerka, et al.
(författare)
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Spatially Explicit Analysis of Genome-Wide SNPs Detects Subtle Population Structure in a Mobile Marine Mammal, the Harbor Porpoise
- 2016
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Ingår i: PLOS ONE. - : Public Library of Science (PLoS). - 1932-6203. ; 11:10, s. e0162792-
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Tidskriftsartikel (refereegranskat)abstract
- The population structure of the highly mobile marine mammal, the harbor porpoise (Phocoena phocoena), in the Atlantic shelf waters follows a pattern of significant isolation-bydistance. The population structure of harbor porpoises from the Baltic Sea, which is connected with the North Sea through a series of basins separated by shallow underwater ridges, however, is more complex. Here, we investigated the population differentiation of harbor porpoises in European Seas with a special focus on the Baltic Sea and adjacent waters, using a population genomics approach. We used 2872 single nucleotide polymorphisms (SNPs), derived from double digest restriction-site associated DNA sequencing (ddRAD-seq), as well as 13 microsatellite loci and mitochondrial haplotypes for the same set of individuals. Spatial principal components analysis (sPCA), and Bayesian clustering on a subset of SNPs suggest three main groupings at the level of all studied regions: the Black Sea, the North Atlantic, and the Baltic Sea. Furthermore, we observed a distinct separation of the North Sea harbor porpoises from the Baltic Sea populations, and identified splits between porpoise populations within the Baltic Sea. We observed a notable distinction between the Belt Sea and the Inner Baltic Sea sub-regions. Improved delineation of harbor porpoise population assignments for the Baltic based on genomic evidence is important for conservation management of this endangered cetacean in threatened habitats, particularly in the Baltic Sea proper. In addition, we show that SNPs outperform microsatellite markers and demonstrate the utility of RAD-tags from a relatively small, opportunistically sampled cetacean sample set for population diversity and divergence analysis.
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6. |
- Wiemann, Annika, et al.
(författare)
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Mitochondrial Control Region and microsatellite analyses on harbour porpoise (Phocoena phocoena) unravel population differentiation in the Baltic Sea and adjacent waters
- 2010
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Ingår i: Conservation Genetics. - : Springer Science and Business Media LLC. - 1566-0621 .- 1572-9737. ; 11:1, s. 195-211
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Tidskriftsartikel (refereegranskat)abstract
- The population status of the harbour porpoise (Phocoena phocoena) in the Baltic area has been a continuous matter of debate. Here we present the by far most comprehensive genetic population structure assessment to date for this region, both with regard to geographic coverage and sample size: 497 porpoise samples from North Sea, Skagerrak, Kattegat, Belt Sea, and Inner Baltic Sea were sequenced at the mitochondrial Control Region and 305 of these specimens were typed at 15 polymorphic microsatellite loci. Samples were stratified according to sample type (stranding vs. by-caught), sex, and season (breeding vs. non-breeding season). Our data provide ample evidence for a population split between the Skagerrak and the Belt Sea, with a transition zone in the Kattegat area. Among other measures, this was particularly visible in significant frequency shifts of the most abundant mitochondrial haplotypes. A particular haplotype almost absent in the North Sea was the most abundant in Belt Sea and Inner Baltic Sea. Microsatellites yielded a similar pattern (i.e., turnover in occurrence of clusters identified by STRUCTURE). Moreover, a highly significant association between microsatellite assignment and unlinked mitochondrial haplotypes further indicates a split between North Sea and Baltic porpoises. For the Inner Baltic Sea, we consistently recovered a small, but significant separation from the Belt Sea population. Despite recent arguments that separation should exceed a predefined threshold before populations shall be managed separately, we argue in favour of precautionary acknowledging the Inner Baltic porpoises as a separate management unit, which should receive particular attention, as it is threatened by various factors, in particular local fishery measures.
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