1. |
- Altenhoff, Adrian M., et al.
(författare)
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Standardized benchmarking in the quest for orthologs
- 2016
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Ingår i: Nature Methods. - 1548-7091 .- 1548-7105. ; 13:5, s. 425-
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Tidskriftsartikel (refereegranskat)abstract
- Achieving high accuracy in orthology inference is essential for many comparative, evolutionary and functional genomic analyses, yet the true evolutionary history of genes is generally unknown and orthologs are used for very different applications across phyla, requiring different precision-recall trade-offs. As a result, it is difficult to assess the performance of orthology inference methods. Here, we present a community effort to establish standards and an automated web-based service to facilitate orthology benchmarking. Using this service, we characterize 15 well-established inference methods and resources on a battery of 20 different benchmarks. Standardized benchmarking provides a way for users to identify the most effective methods for the problem at hand, sets a minimum requirement for new tools and resources, and guides the development of more accurate orthology inference methods.
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2. |
- Hodorova, Viktoria, et al.
(författare)
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Genome Sequence of the Yeast Saprochaete ingens CBS 517.90
- 2019
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Ingår i: Microbiology Resource Announcements. - : AMER SOC MICROBIOLOGY. - 2576-098X. ; 8:50
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Tidskriftsartikel (refereegranskat)abstract
- Chromosome-scale genome assembly of the yeast Saprochaete ingens CBS 517.90 was determined by a combination of technologies producing short (HiSeq X; Illumina) and long (MinION; Oxford Nanopore Technologies) reads. The 21.2-Mbp genome sequence has a GC content of 36.9% and codes for 6,475 predicted proteins.
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3. |
- Lichancova, Hana, et al.
(författare)
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Genome Sequence of Flavor-Producing Yeast Saprochaete suaveolens NRRL Y-17571
- 2019
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Ingår i: Microbiology Resource Announcements. - : AMER SOC MICROBIOLOGY. - 2576-098X. ; 8:9
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Tidskriftsartikel (refereegranskat)abstract
- Saprochaete suaveolens is an ascomycetous yeast that produces a range of fruity flavors and fragrances. Here, we report the high-contiguity genome sequence of the ex-holotype strain, NRRL Y-17571 (CBS 152.25). The nuclear genome sequence contains 24.4 Mbp and codes for 8,119 predicted proteins.
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