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- Beal, Jacob, et al.
(författare)
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Robust estimation of bacterial cell count from optical density
- 2020
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Ingår i: Communications Biology. - : Springer Science and Business Media LLC. - 2399-3642. ; 3:1
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Tidskriftsartikel (refereegranskat)abstract
- Optical density (OD) is widely used to estimate the density of cells in liquid culture, but cannot be compared between instruments without a standardized calibration protocol and is challenging to relate to actual cell count. We address this with an interlaboratory study comparing three simple, low-cost, and highly accessible OD calibration protocols across 244 laboratories, applied to eight strains of constitutive GFP-expressing E. coli. Based on our results, we recommend calibrating OD to estimated cell count using serial dilution of silica microspheres, which produces highly precise calibration (95.5% of residuals <1.2-fold), is easily assessed for quality control, also assesses instrument effective linear range, and can be combined with fluorescence calibration to obtain units of Molecules of Equivalent Fluorescein (MEFL) per cell, allowing direct comparison and data fusion with flow cytometry measurements: in our study, fluorescence per cell measurements showed only a 1.07-fold mean difference between plate reader and flow cytometry data.
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| 4. |
- Biermann, Frank, et al.
(författare)
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Scientific evidence on the political impact of the Sustainable Development Goals
- 2022
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Ingår i: Nature Sustainability. - : Springer Nature. - 2398-9629. ; 5:9, s. 795-800
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Tidskriftsartikel (refereegranskat)abstract
- In 2015, the United Nations agreed on 17 Sustainable Development Goals as the central normative framework for sustainable development worldwide. The effectiveness of governing by such broad global goals, however, remains uncertain, and we lack comprehensive meta-studies that assess the political impact of the goals across countries and globally. We present here condensed evidence from an analysis of over 3,000 scientific studies on the Sustainable Development Goals published between 2016 and April 2021. Our findings suggests that the goals have had some political impact on institutions and policies, from local to global governance. This impact has been largely discursive, affecting the way actors understand and communicate about sustainable development. More profound normative and institutional impact, from legislative action to changing resource allocation, remains rare. We conclude that the scientific evidence suggests only limited transformative political impact of the Sustainable Development Goals thus far.
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- Brodie, Juliet, et al.
(författare)
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The future of the northeast Atlantic benthic flora in a high CO2 world
- 2014
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Ingår i: Ecology and Evolution. - : John Wiley & Sons. - 2045-7758. ; 4:13, s. 2787-2798
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Tidskriftsartikel (refereegranskat)abstract
- Seaweed and seagrass communities in the northeast Atlantic have been profoundly impacted by humans, and the rate of change is accelerating rapidly due to runaway CO2 emissions and mounting pressures on coastlines associated with human population growth and increased consumption of finite resources. Here, we predict how rapid warming and acidification are likely to affect benthic flora and coastal ecosystems of the northeast Atlantic in this century, based on global evidence from the literature as interpreted by the collective knowledge of the authorship. We predict that warming will kill off kelp forests in the south and that ocean acidification will remove maerl habitat in the north. Seagrasses will proliferate, and associated epiphytes switch from calcified algae to diatoms and filamentous species. Invasive species will thrive in niches liberated by loss of native species and spread via exponential development of artificial marine structures. Combined impacts of seawater warming, ocean acidification, and increased storminess may replace structurally diverse seaweed canopies, with associated calcified and noncalcified flora, with simple habitats dominated by noncalcified, turf-forming seaweeds.
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- Flynn, Kevin J, et al.
(författare)
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Misuse of the phytoplankton-zooplankton dichotomy : the need to assign organisms as mixotrophs within plankton functional types
- 2013
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Ingår i: Journal of Plankton Research. - : Oxford University Press (OUP). - 0142-7873 .- 1464-3774. ; 35:1, s. 3-11
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Tidskriftsartikel (refereegranskat)abstract
- The classic portrayal of plankton is dominated by phytoplanktonic primary producersand zooplanktonic secondary producers. In reality, many if not most planktontraditionally labelled as phytoplankton or microzooplankton should be identifiedas mixotrophs, contributing to both primary and secondary production. Mixotrophicprotists (i.e. single-celled eukaryotes that perform photosynthesis and grazeon particles) do not represent a minor component of the plankton, as some formof inferior representatives of the past evolution of protists; they represent a majorcomponent of the extant protist plankton, and one which could become moredominant with climate change. The implications for this mistaken identification, ofthe incorrect labelling of mixotrophs as “phytoplankton” or “microzooplankton”,are great. It extends from the (mis)use of photopigments as indicators of primaryproduction performed by strict photoautotrophs rather than also (co)locating mixotrophicactivity, through to the inadequacy of plankton functional type descriptionsin models (noting that mixotrophic production in the individual organism is not asimple sum of phototrophy and heterotrophy). We propose that mixotrophy shouldbe recognized as a major contributor to plankton dynamics, with due effortexpended in field and laboratory studies, and should no longer be side-lined inconceptual food webs or in mathematical models.
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- Hurd, Catriona L., et al.
(författare)
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Ocean acidification as a multiple driver: how interactions between changing seawater carbonate parameters affect marine life
- 2019
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Ingår i: Marine and Freshwater Research. - : CSIRO Publishing. - 1323-1650 .- 1448-6059. ; 71:3, s. 263-274
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Tidskriftsartikel (refereegranskat)abstract
- ‘Multiple drivers’ (also termed ‘multiple stressors’) is the term used to describe the cumulative effects of multiple environmental factors on organisms or ecosystems. Here, we consider ocean acidification as a multiple driver because many inorganic carbon parameters are changing simultaneously, including total dissolved inorganic carbon, CO2, HCO3–, CO32–, H+ and CaCO3 saturation state. With the rapid expansion of ocean acidification research has come a greater understanding of the complexity and intricacies of how these simultaneous changes to the seawater carbonate system are affecting marine life. We start by clarifying key terms used by chemists and biologists to describe the changing seawater inorganic carbon system. Then, using key groups of non-calcifying (fish, seaweeds, diatoms) and calcifying (coralline algae, coccolithophores, corals, molluscs) organisms, we consider how various physiological processes are affected by different components of the carbonate system.
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- Mitra, Aditee, et al.
(författare)
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The role of mixotrophic protists in the biological carbon pump
- 2014
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Ingår i: Biogeosciences. - : Copernicus GmbH. - 1726-4170 .- 1726-4189. ; 11, s. 995-1005
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Tidskriftsartikel (refereegranskat)abstract
- The traditional view of the planktonic foodweb describes consumption of inorganic nutrientsby photo-autotrophic phytoplankton, which in turn supports zooplankton and ultimately higher trophic levels. Pathways centred on bacteria provide mechanisms for nutrient recycling. This structure lies at the foundation of most models used to explore biogeochemical cycling, functioning of the biological pump, and the impact of climate change on these processes. We suggest an alternative paradigm, which sees the bulk of the base of this foodweb supported by protist plankton (phytoplankton and microzooplankton) communities that are mixotrophic – combining phototrophy and phagotrophy within a single cell. The photoautotrophic eukaryotic plankton and their heterotrophic microzooplankton grazers dominate only within immature environments (e.g., spring bloom in temperate systems). With their flexible nutrition, mixotrophic protists dominate in more mature systems (e.g., temperate summer, established eutrophic systems and oligotrophic systems); the more stable water columns suggested under climate change may also be expected to favour these mixotrophs. We explore how such a predominantlymixotrophic structure affects microbial trophic dynamics and the biological pump. The mixotroph dominated structure differs fundamentally in its flow of energy and nutrients, with a shortened and potentially more efficient chain from nutrient regeneration to primary production. Furthermore, mixotrophy enables a direct conduit for the support of primary production from bacterial production. We show how the exclusion of an explicit mixotrophic component in studies of the pelagic microbial communities leads to a failure to capture the true dynamics of the carbon flow. In order to prevent a misinterpretation of the full implications of climate change upon biogeochemical cyclingand the functioning of the biological pump, we recommend inclusion of multi-nutrient mixotroph models within ecosystem studies.
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| 9. |
- Torrens, J., et al.
(författare)
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Advancing urban transitions and transformations research
- 2021
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Ingår i: Environmental Innovation and Societal Transitions. - : Elsevier. - 2210-4224. ; 41, s. 102-105
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Forskningsöversikt (refereegranskat)abstract
- Urban transitions and transformations research fosters a dialogue between sustainability transitions theory an inter- and transdisciplinary research on urban change. As a field, urban transitions and transformations research encompasses plural analytical and conceptual perspectives. In doing so, this field opens up sustainability transitions research to new communities of practice in urban environments, including mayors, transnational municipal networks, and international organizations.
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| 10. |
- Boushel, R, et al.
(författare)
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Editorial
- 2015
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Ingår i: Scandinavian journal of medicine & science in sports. - : Wiley. - 1600-0838 .- 0905-7188. ; 25 Suppl 4, s. 1-6
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Tidskriftsartikel (övrigt vetenskapligt/konstnärligt)
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