| 1. |
- Callaway, EM, et al.
(författare)
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A multimodal cell census and atlas of the mammalian primary motor cortex
- 2021
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Ingår i: Nature. - : Springer Science and Business Media LLC. - 1476-4687 .- 0028-0836. ; 598:7879, s. 86-102
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Tidskriftsartikel (refereegranskat)abstract
- Here we report the generation of a multimodal cell census and atlas of the mammalian primary motor cortex as the initial product of the BRAIN Initiative Cell Census Network (BICCN). This was achieved by coordinated large-scale analyses of single-cell transcriptomes, chromatin accessibility, DNA methylomes, spatially resolved single-cell transcriptomes, morphological and electrophysiological properties and cellular resolution input–output mapping, integrated through cross-modal computational analysis. Our results advance the collective knowledge and understanding of brain cell-type organization1–5. First, our study reveals a unified molecular genetic landscape of cortical cell types that integrates their transcriptome, open chromatin and DNA methylation maps. Second, cross-species analysis achieves a consensus taxonomy of transcriptomic types and their hierarchical organization that is conserved from mouse to marmoset and human. Third, in situ single-cell transcriptomics provides a spatially resolved cell-type atlas of the motor cortex. Fourth, cross-modal analysis provides compelling evidence for the transcriptomic, epigenomic and gene regulatory basis of neuronal phenotypes such as their physiological and anatomical properties, demonstrating the biological validity and genomic underpinning of neuron types. We further present an extensive genetic toolset for targeting glutamatergic neuron types towards linking their molecular and developmental identity to their circuit function. Together, our results establish a unifying and mechanistic framework of neuronal cell-type organization that integrates multi-layered molecular genetic and spatial information with multi-faceted phenotypic properties.
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| 2. |
- Binzel, R.P., et al.
(författare)
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Compositional distributions and evolutionary processes for the near-Earth object population: Results from the MIT-Hawaii Near-Earth Object Spectroscopic Survey (MITHNEOS)
- 2019
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Ingår i: Icarus. - : Elsevier. - 0019-1035 .- 1090-2643. ; 324, s. 41-76
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Tidskriftsartikel (refereegranskat)abstract
- Advancing technology in near-infrared instrumentation and dedicated planetary telescope facilities have enabled nearly two decades of reconnoitering the spectral properties for near-Earth objects (NEOs). We report measured spectral properties for more than 1000 NEOs, representing >5 percent of the currently discovered population. Thermal flux detected below 2.5 microns allows us to make albedo estimates for nearly 50 objects, including two comets. Additional spectral data are reported for more than 350 Mars-crossing asteroids. Most of these measurements were achieved through a collaboration between researchers at the Massachusetts Institute of Technology and the University of Hawaii, with full cooperation of the NASA Infrared Telescope Facility (IRTF) on Mauna Kea. We call this project the MIT-Hawaii Near-Earth Object Spectroscopic Survey (MITHNEOS; myth-neos). While MITHNEOS has continuously released all spectral data for immediate use by the scientific community, our objectives for this paper are to: (1) detail the methods and limits of the survey data, (2) formally present a compilation of results including their taxonomic classification within a single internally consistent framework, (3) perform a preliminary analysis on the overall population characteristics with a concentration toward deducing key physical processes and identifying their source region for escaping the main belt. Augmenting our newly published measurements are the previously published results from the broad NEO community, including many results graciously shared by colleagues prior to formal publication. With this collective data set, we find the near-Earth population matches the diversity of the main-belt, with all main-belt taxonomic classes represented in our sample. Potentially hazardous asteroids (PHAs) as well as the subset of mission accessible asteroids (ΔV≤ 7 km/s) both appear to be a representative mix of the overall NEO population, consistent with strong dynamical mixing for the population that interacts most closely with Earth. Mars crossers, however, are less diverse and appear to more closely match the inner belt population from where they have more recently diffused. The fractional distributions of major taxonomic classes (60% S, 20% C, 20% other) appear remarkably constant over two orders of magnitude in size (10 km to 100 m), which is eight orders of magnitude in mass, though we note unaccounted bias effects enter into our statistics below about 500m. Given the range of surface ages, including possible refreshment by planetary encounters, we are able to identify a very specific space weathering vector tracing the transition from Q- to Sq- to S-types that follows the natural dispersion for asteroid spectra mapped into principal component space. We also are able to interpret a shock darkening vector that may account for some objects having featureless spectra. Space weathering effects for C-types are complex; these results are described separately by Lantz, Binzel, DeMeo. (2018, Icarus 302, 10-17). Independent correlation of dynamical models with taxonomic classes map the escape zones for NEOs to main-belt regions consistent with well established heliocentric compositional gradients. We push beyond taxonomy to interpret our visible plus near-infrared spectra in terms of the olivine and pyroxene mineralogy consistent with the H, L, and LL classes of ordinary chondrites meteorites. Correlating meteorite interpretations with dynamical escape region models shows a preference for LL chondrites to arrive from the ν6 resonance and H chondrites to have a preferential signature from the mid-belt region (3:1 resonance). L chondrites show some preference toward the outer belt, but not at a significant level. We define a Space Weathering Parameter as a continuous variable and find evidence for step-wise changes in space weathering properties across different planet crossing zones in the inner solar system. Overall we hypothesize the relative roles of planetary encounters, YORP spin-up, and thermal cycling across the inner solar system.
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| 3. |
- Loyfer, N, et al.
(författare)
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A DNA methylation atlas of normal human cell types
- 2023
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Ingår i: Nature. - : Springer Science and Business Media LLC. - 1476-4687 .- 0028-0836. ; 613:79447943, s. 355-
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Tidskriftsartikel (refereegranskat)abstract
- DNA methylation is a fundamental epigenetic mark that governs gene expression and chromatin organization, thus providing a window into cellular identity and developmental processes1. Current datasets typically include only a fraction of methylation sites and are often based either on cell lines that underwent massive changes in culture or on tissues containing unspecified mixtures of cells2–5. Here we describe a human methylome atlas, based on deep whole-genome bisulfite sequencing, allowing fragment-level analysis across thousands of unique markers for 39 cell types sorted from 205 healthy tissue samples. Replicates of the same cell type are more than 99.5% identical, demonstrating the robustness of cell identity programmes to environmental perturbation. Unsupervised clustering of the atlas recapitulates key elements of tissue ontogeny and identifies methylation patterns retained since embryonic development. Loci uniquely unmethylated in an individual cell type often reside in transcriptional enhancers and contain DNA binding sites for tissue-specific transcriptional regulators. Uniquely hypermethylated loci are rare and are enriched for CpG islands, Polycomb targets and CTCF binding sites, suggesting a new role in shaping cell-type-specific chromatin looping. The atlas provides an essential resource for study of gene regulation and disease-associated genetic variants, and a wealth of potential tissue-specific biomarkers for use in liquid biopsies.
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| 4. |
- DeMeo, Francesca E., et al.
(författare)
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Isolating the mechanisms for asteroid surface refreshing
- 2023
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Ingår i: Icarus. - : Elsevier. - 0019-1035 .- 1090-2643. ; 389
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Tidskriftsartikel (refereegranskat)abstract
- Evidence is seen for young, fresh surfaces among Near-Earth and Main-Belt asteroids even though space-weathering timescales are shorter than the age of the surfaces. A number of mechanisms have been proposed to refresh asteroid surfaces on short timescales, such as planetary encounters, YORP spinup, thermal degradation, and collisions. Additionally, other factors such as grain size effects have been proposed to explain the existence of these “fresh-looking” spectra. To investigate the role each of these mechanisms may play, we collected a sample of visible and near-infrared spectra of 477 near-Earth and Mars Crosser asteroids with similar sizes and compositions — all with absolute magnitude H > 16 and within the S-complex and having olivine to pyroxene (ol/(ol+opx)) ratios >0.65. We taxonomically classify these objects in the Q (fresh) and S (weathered) classes. We find four trends in the Q/S ratio: (1) previous work demonstrated the Q/S ratio increases at smaller sizes down to H ≲16, but we find a sharp increase near H∼19 after which the ratio decreases monotonically. (2) in agreement with many previous studies, the Q/S ratio increases with decreasing perihelion distance, and we find it is non-zero for larger perihelia >1.2AU, (3) as a new finding our work reveals the Q/S ratio has a sharp, significant peak near ∼5° orbital inclination, and (4) we confirm previous findings that the Q/S ratio is higher for objects that have the possibility of encounter with Earth and Venus versus those that do not, however this finding cannot be distinguished from the perihelion trend. No single resurfacing mechanism can explain all of these trends, so multiple mechanisms are required. YORP spin-up scales with size, thermal degradation is dependent on perihelion, planetary encounters trend with inclination, perihelion and MOID, noting that asteroid–asteroid collisions are also dependent on inclination. It is likely that a combination of all four resurfacing mechanisms are needed to account for all observational trends.
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| 5. |
- Kotlov, A, et al.
(författare)
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Luminescence study of self-trapped holes in pure and Fe- or Mo-doped ZnWO4 crystals
- 2004
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Ingår i: LUMDETR2003. - : Elsevier BV. ; 38, s. 715-715
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Konferensbidrag (refereegranskat)abstract
- Thermostimulated and photostimulated luminescence of ZnWO4, ZnWO4:Fe and ZnWO4:MO Crystals irradiated at low temperatures by X-rays or UV photons was studied in the temperature range 4.2-300 K in order to clarify the creation and recombination processes of the elementary colour centres. The connection of the luminescence phenomena with the self-trapped holes has been revealed. (C) 2003 Published by Elsevier Ltd.
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| 6. |
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| 7. |
- Marsset, Michaël, et al.
(författare)
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The Debiased Compositional Distribution of MITHNEOS: Global Match between the Near-Earth and Main-belt Asteroid Populations, and Excess of D-type Near-Earth Objects
- 2022
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Ingår i: Astronomical Journal. - : Institute of Physics (IOP). - 0004-6256 .- 1538-3881. ; 163:4
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Tidskriftsartikel (refereegranskat)abstract
- We report 491 new near-infrared spectroscopic measurements of 420 near-Earth objects (NEOs) collected on the NASA InfraRed Telescope Facility as part of the MIT-Hawaii NEO Spectroscopic Survey. These measurements were combined with previously published data from Binzel et al. and bias-corrected to derive the intrinsic compositional distribution of the overall NEO population, as well as of subpopulations coming from various escape routes (ERs) in the asteroid belt and beyond. The resulting distributions reflect well the overall compositional gradient of the asteroid belt, with decreasing fractions of silicate-rich (S- and Q-type) bodies and increasing fractions of carbonaceous (B-, C-, D- and P-type) bodies as a function of increasing ER distance from the Sun. The close compositional match between NEOs and their predicted source populations validates dynamical models used to identify ERs and argues against any strong composition change with size in the asteroid belt between ∼5 km and ∼100 m. A notable exception comes from the overabundance of D-type NEOs from the 5:2J and, to a lesser extend, the 3:1J and ν6 ERs, hinting at the presence of a large population of small D-type asteroids in the main belt. Alternatively, this excess may indicate preferential spectral evolution from D-type surfaces to C and P types as a consequence of space weathering, or point to the fact that D-type objects fragment more often than other spectral types in the NEO space. No further evidence for the existence of collisional families in the main belt, below the detection limit of current main-belt surveys, was found in this work.
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| 8. |
- Sun, Qing, et al.
(författare)
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Role of Microstructure in Oxygen Induced Photodegradation of Methylammonium Lead Triiodide Perovskite Films
- 2017
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Ingår i: Advanced Energy Materials. - : WILEY-V C H VERLAG GMBH. - 1614-6832 .- 1614-6840. ; 7:20
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Tidskriftsartikel (refereegranskat)abstract
- This paper investigates the impact of microstructure on the degradation rate of methylammonium lead triiodide (MAPbI(3)) perovskite films upon exposure to light and oxygen. By comparing the oxygen induced degradation of perovskite films of different microstructure-fabricated using either a lead acetate trihydrate precursor or a solvent engineering technique-it is demonstrated that films with larger and more uniform grains and better electronic quality show a significantly reduced degradation compared to films with smaller, more irregular grains. The effect of degradation on the optical, compositional, and microstructural properties of the perovskite layers is characterized and it is demonstrated that oxygen induced degradation is initiated at the layer surface and grain boundaries. It is found that under illumination, irreversible degradation can occur at oxygen levels as low as 1%, suggesting that degradation can commence already during the device fabrication stage. Finally, this work establishes that improved thin-film microstructure, with large uniform grains and a low density of defects, is a prerequisite for enhanced stability necessary in order to make MAPbI(3) a promising long lived and low cost alternative for future photovoltaic applications.
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| 9. |
- Treat, Claire C., et al.
(författare)
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Tundra landscape heterogeneity, not interannual variability, controls the decadal regional carbon balance in the Western Russian Arctic
- 2018
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Ingår i: Global Change Biology. - : Wiley. - 1354-1013 .- 1365-2486. ; 24:11, s. 5188-5204
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Tidskriftsartikel (refereegranskat)abstract
- Across the Arctic, the net ecosystem carbon (C) balance of tundra ecosystems is highly uncertain due to substantial temporal variability of C fluxes and to landscape heterogeneity. We modeled both carbon dioxide (CO2) and methane (CH4) fluxes for the dominant land cover types in a similar to 100-km(2) sub-Arctic tundra region in northeast European Russia for the period of 2006-2015 using process-based biogeochemical models. Modeled net annual CO2 fluxes ranged from --300 g C m(-2) year(-1) [net uptake] in a willow fen to 3 g Cm-2 year(-1) [net source] in dry lichen tundra. Modeled annual CH4 emissions ranged from -0.2 to 22.3 g Cm-2 year(-1) at a peat plateau site and a willow fen site, respectively. Interannual variability over the decade was relatively small (20%-25%) in comparison with variability among the land cover types (150%). Using high-resolution land cover classification, the region was a net sink of atmospheric CO2 across most land cover types but a net source of CH4 to the atmosphere due to high emissions from permafrost-free fens. Using a lower resolution for land cover classification resulted in a 20%-65% underestimation of regional CH4 flux relative to high-resolution classification and smaller (10%) overestimation of regional CO2 uptake due to the underestimation of wetland area by 60%. The relative fraction of uplands versus wetlands was key to determining the net regional C balance at this and other Arctic tundra sites because wetlands were hot spots for C cycling in Arctic tundra ecosystems.
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