| 1. |
- Ali, Hazrat, et al.
(författare)
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A Deep Learning Pipeline for Identification of Motor Units in Musculoskeletal Ultrasound
- 2020
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Ingår i: IEEE Access. - : IEEE. - 2169-3536. ; 8, s. 170595-170608
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Tidskriftsartikel (refereegranskat)abstract
- Skeletal muscles are functionally regulated by populations of so-called motor units (MUs). An MU comprises a bundle of muscle fibers controlled by a neuron from the spinal cord. Current methods to diagnose neuromuscular diseases and monitor rehabilitation, and study sports sciences rely on recording and analyzing the bio-electric activity of the MUs. However, these methods provide information from a limited part of a muscle. Ultrasound imaging provides information from a large part of the muscle. It has recently been shown that ultrafast ultrasound imaging can be used to record and analyze the mechanical response of individual MUs using blind source separation. In this work, we present an alternative method - a deep learning pipeline - to identify active MUs in ultrasound image sequences, including segmentation of their territories and signal estimation of their mechanical responses (twitch train). We train and evaluate the model using simulated data mimicking the complex activation pattern of tens of activated MUs with overlapping territories and partially synchronized activation patterns. Using a slow fusion approach (based on 3D CNNs), we transform the spatiotemporal image sequence data to 2D representations and apply a deep neural network architecture for segmentation. Next, we employ a second deep neural network architecture for signal estimation. The results show that the proposed pipeline can effectively identify individual MUs, estimate their territories, and estimate their twitch train signal at low contraction forces. The framework can retain spatio-temporal consistencies and information of the mechanical response of MU activity even when the ultrasound image sequences are transformed into a 2D representation for compatibility with more traditional computer vision and image processing techniques. The proposed pipeline is potentially useful to identify simultaneously active MUs in whole muscles in ultrasound image sequences of voluntary skeletal muscle contractions at low force levels.
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| 2. |
- Ali, Hazrat, et al.
(författare)
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Modelling intra-muscular contraction dynamics using in silico to in vivo domain translation
- 2022
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Ingår i: Biomedical engineering online. - : BioMed Central (BMC). - 1475-925X. ; 21:1
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Tidskriftsartikel (refereegranskat)abstract
- Background: Advances in sports medicine, rehabilitation applications and diagnostics of neuromuscular disorders are based on the analysis of skeletal muscle contractions. Recently, medical imaging techniques have transformed the study of muscle contractions, by allowing identifcation of individual motor units’ activity, within the whole studied muscle. However, appropriate image-based simulation models, which would assist the continued development of these new imaging methods are missing. This is mainly due to a lack of models that describe the complex interaction between tissues within a muscle and its surroundings, e.g., muscle fbres, fascia, vasculature, bone, skin, and subcutaneous fat. Herein, we propose a new approach to overcome this limitation.Methods: In this work, we propose to use deep learning to model the authentic intramuscular skeletal muscle contraction pattern using domain-to-domain translation between in silico (simulated) and in vivo (experimental) image sequences of skeletal muscle contraction dynamics. For this purpose, the 3D cycle generative adversarial network (cycleGAN) models were evaluated on several hyperparameter settings and modifcations. The results show that there were large diferences between the spatial features of in silico and in vivo data, and that a model could be trained to generate authentic spatio-temporal features similar to those obtained from in vivo experimental data. In addition, we used diference maps between input and output of the trained model generator to study the translated characteristics of in vivo data.Results: This work provides a model to generate authentic intra-muscular skeletal muscle contraction dynamics that could be used to gain further and much needed physiological and pathological insights and assess and overcome limitations within the newly developed research feld of neuromuscular imaging.
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| 3. |
- Carbonaro, M., et al.
(författare)
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Combining high-density electromyography and ultrafast ultrasound to assess individual motor unit properties in vivo
- 2023
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Ingår i: Convegno nazionale di bioingegneria: eight national congress of bioengineering. - : Patron Editore S.r.l.. - 2724-2129. - 9788855580113 ; , s. 1-4
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Konferensbidrag (refereegranskat)abstract
- This study aims to compare two methods for the identification of anatomical and mechanical motor unit (MU) properties through the integration of high-density surface electromyography (HDsEMG) and ultrafast ultrasound (UUS). The two approaches rely on a combined analysis of the firing pattern of active MUs, identified from HDsEMG, and tissue velocity sequences of the muscle cross-section, obtained from UUS. The first method is the spike-triggered averaging (STA) of the tissue velocity sequence based on the occurrences of MU firings. The second is a method based on spatio-temporal independent component analysis (STICA) enhanced with the information of single MU firings. We compared the capability of these two approaches to identify the regions where single MU fibers are located within the muscle cross-section (MU displacement area) in vivo. HDsEMG signals and UUS images were detected simultaneously from biceps brachii in ten participants (6 males and 4 females) during low-level isometric elbow flexions. Experimental signals were processed by implementing both STA and STICA approaches. The medio-lateral distance between the estimated MU displacement areas and the centroid of the MU action potential distributions was used to compare the two methods. We found that STICA and STA are able to detect MU displacement areas. However, STICA provides more precise estimations to the detriment of higher computational complexity.
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| 4. |
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| 5. |
- Lubel, Emma, et al.
(författare)
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Accurate identification of motoneuron discharges from ultrasound images across the full muscle cross-section
- 2024
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Ingår i: IEEE Transactions on Biomedical Engineering. - : IEEE. - 0018-9294 .- 1558-2531. ; 71:5, s. 1466-1477
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Tidskriftsartikel (refereegranskat)abstract
- Objective: Non-invasive identification of motoneuron (MN) activity commonly uses electromyography (EMG). However, surface EMG (sEMG) detects only superficial sources, at less than approximately 10-mm depth. Intramuscular EMG can detect deep sources, but it is limited to sources within a few mm of the detection site. Conversely, ultrasound (US) images have high spatial resolution across the whole muscle cross-section. The activity of MNs can be extracted from US images due to the movements that MN activation generates in the innervated muscle fibers. Current US-based decomposition methods can accurately identify the location and average twitch induced by MN activity. However, they cannot accurately detect MN discharge times.Methods: Here, we present a method based on the convolutive blind source separation of US images to estimate MN discharge times with high accuracy. The method was validated across 10 participants using concomitant sEMG decomposition as the ground truth.Results: 140 unique MN spike trains were identified from US images, with a rate of agreement (RoA) with sEMG decomposition of 87.4 ± 10.3%. Over 50% of these MN spike trains had a RoA greater than 90%. Furthermore, with US, we identified additional MUs well beyond the sEMG detection volume, at up to >30 mm below the skin.Conclusion: The proposed method can identify discharges of MNs innervating muscle fibers in a large range of depths within the muscle from US images. Significance: The proposed methodology can non-invasively interface with the outer layers of the central nervous system innervating muscles across the full cross-section.
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| 6. |
- Lubel, Emma, et al.
(författare)
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Non-linearity in motor unit velocity twitch dynamics: Implications for ultrafast ultrasound source separation
- 2023
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Ingår i: IEEE transactions on neural systems and rehabilitation engineering. - : Institute of Electrical and Electronics Engineers (IEEE). - 1534-4320 .- 1558-0210.
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Tidskriftsartikel (refereegranskat)abstract
- Ultrasound (US) muscle image series can be used for peripheral human-machine interfacing based on global features, or even on the decomposition of US images into the contributions of individual motor units (MUs). With respect to state-of-the-art surface electromyography (sEMG), US provides higher spatial resolution and deeper penetration depth. However, the accuracy of current methods for direct US decomposition, even at low forces, is relatively poor. These methods are based on linear mathematical models of the contributions of MUs to US images. Here, we test the hypothesis of linearity by comparing the average velocity twitch profiles of MUs when varying the number of other concomitantly active units. We observe that the velocity twitch profile has a decreasing peak-to-peak amplitude when tracking the same target motor unit at progressively increasing contraction force levels, thus with an increasing number of concomitantly active units. This observation indicates non-linear factors in the generation model. Furthermore, we directly studied the impact of one MU on a neighboring MU, finding that the effect of one source on the other is not symmetrical and may be related to unit size. We conclude that a linear approximation is partly limiting the decomposition methods to decompose full velocity twitch trains from velocity images, highlighting the need for more advanced models and methods for US decomposition than those currently employed.
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| 7. |
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| 8. |
- Martschini, Martin, et al.
(författare)
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Light induced suppression of sulfur in a cesium sputter ion source
- 2012
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Ingår i: International Journal of Mass Spectrometry. - : Elsevier BV. - 1387-3806. ; 315, s. 55-59
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Tidskriftsartikel (refereegranskat)abstract
- New techniques for suppression of atomic isobars in negative ion beams are of great interest for accelerator mass spectrometry (AMS). Especially small and medium-sized facilities can significantly extend their measurement capabilities to new interesting isotopes with a technique independent of terminal voltage. In a new approach, the effect of continuous wave laser light directed towards the cathode surface in a cesium sputter ion source of the Middleton type was studied. The laser light induced a significant change in oxygen, sulfur and chlorine negative ion production from a AgCl target. Approximately 100 mW of laser light reduced the sulfur to chlorine ratio by one order of magnitude. The effect was found to depend on laser power and ion source parameters but not on the laser wavelength. The time constant of the effect varied from a few seconds up to several minutes. Experiments were first performed at the ion beam facility GUNILLA at University of Gothenburg with macroscopic amounts of sulfur. The results were then reproduced at the VERA AMS facility with chemically cleaned AgCl targets containing ∼1 ppm sulfur. The physical explanation behind the effect is still unclear. Nevertheless, the technique has been successfully applied during a regular AMS measurement of 36Cl.
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| 9. |
- Rohlén, Robin, et al.
(författare)
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A fast blind source separation algorithm for decomposing ultrafast ultrasound images into spatiotemporal muscle unit kinematics
- 2024
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Annan publikation (övrigt vetenskapligt/konstnärligt)abstract
- Objective: Ultrasound can detect individual motor unit (MU) activity during voluntary isometric contractions based on their subtle axial displacements. The detection pipeline, currently performed offline, is based on displacement velocity images and identifying the subtle axial displacements. This identification can preferably be made through a blind source separation (BSS) algorithm with the feasibility of translating the pipeline from offline to online. However, the question remains how to reduce the computational time for the BSS algorithm, which includes demixing tissue velocities from many different sources, e.g., the active MU displacements, arterial pulsations, bones, connective tissue, and noise.Approach: This study proposes a fast velocity-based BSS (velBSS) algorithm suitable for online purposes that decomposes velocity images from low-force voluntary isometric contractions into spatiotemporal components associated with single MU activities. The proposed algorithm will be compared against stICA, i.e., the method used in previous papers, for various subjects, ultrasound- and EMG systems, where the latter acts as MU reference recordings.Main results: We found that the spatial and temporal correlation between the MU-associated components from velBSS and stICA was high (0.86 +/- 0.05 and 0.87 +/- 0.06). The spike-triggered averaged twitch responses (using the MU spike trains from EMG) had an extremely high correlation (0.99 +/- 0.01). In addition, the computational time for velBSS was at least 50 times less than for stICA.Significance: The present algorithm (velBSS) outperforms the currently available method (stICA). It provides a promising translation towards an online pipeline and will be important in the continued development of this research field of functional neuromuscular imaging.
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| 10. |
- Rohlén, Robin, et al.
(författare)
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A fast blind source separation algorithm for decomposing ultrafast ultrasound images into spatiotemporal muscle unit kinematics
- 2023
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Ingår i: Journal of Neural Engineering. - 1741-2560 .- 1741-2552.
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Tidskriftsartikel (refereegranskat)abstract
- Objective: Ultrasound can detect individual motor unit (MU) activity during voluntary isometric contractions based on their subtle axial displacements. The detection pipeline, currently performed offline, is based on displacement velocity images and identifying the subtle axial displacements. This identification can preferably be made through a blind source separation (BSS) algorithm with the feasibility of translating the pipeline from offline to online. However, the question remains how to reduce the computational time for the BSS algorithm, which includes demixing tissue velocities from many different sources, e.g., the active MU displacements, arterial pulsations, bones, connective tissue, and noise.Approach: This study proposes a fast velocity-based BSS (velBSS) algorithm suitable for online purposes that decomposes velocity images from low-force voluntary isometric contractions into spatiotemporal components associated with single MU activities. The proposed algorithm will be compared against spatiotemporal independent component analysis (stICA), i.e., the method used in previous papers, for various subjects, ultrasound- and EMG systems, where the latter acts as MU reference recordings.Main results: We found that the computational time for velBSS was at least 20 times less than for stICA, while the twitch responses and spatial maps extracted from stICA and velBSS for the same MU reference were highly correlated (0.96 ± 0.05 and 0.81 ± 0.13).Significance: The present algorithm (velBSS) is computationally much faster than the currently available method (stICA) while maintaining the same performance. It provides a promising translation towards an online pipeline and will be important in the continued development of this research field of functional neuromuscular imaging.
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