| 1. |
- de Melo, Michaela L, et al.
(författare)
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Flood pulse regulation of bacterioplankton community composition in an Amazonian floodplain lake
- 2019
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Ingår i: Freshwater Biology. - : Wiley. - 0046-5070 .- 1365-2427. ; 64:1, s. 108-120
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Tidskriftsartikel (refereegranskat)abstract
- Understanding spatial and temporal dynamics of microbial communities is a central challenge in microbial ecology since microorganisms play a key role in ecosystem functioning and biogeochemical cycles. Amazonian aquatic systems comprise a dynamic mosaic of heterogeneous habits but are understudied and there is limited information about the mechanisms that shape bacterial community composition (BCC). There is a consensus that environmental selection (species sorting) and dispersal processes (source?sink dynamics) act in concert to shape the composition of these communities, but the relative importance of each mechanism may vary dramatically through time and between systems. Applying 16S rRNA gene amplicon high-throughput sequencing, we studied factors and processes that modulate BCC in an Amazonian floodplain lake and used source-tracking models to trace the main dispersal sources of microorganisms in the whole floodplain system during a full hydrological cycle. Our source-tracking models indicated that dispersal processes were predominant, explaining most of the BCC variability throughout the study period. We observed more sources contributing to the sink community during the falling water than rising water period, when contributions from the Solim?es River dominated. There was a clear seasonal pattern in BCC, closely related to environmental variables, suggesting that the successful establishment of dispersing bacteria also depends on environmental filtering that is linked to water flow. In summary, source?sink dynamics and species sorting were strongly affected by water exchange and connectivity with the main river that varied throughout the flood pulse cycle. Our results demonstrated the influence of lateral transport and temporal dynamics on BCC in Amazonian floodplain lakes that could ultimately impact regional carbon budgets and biogeochemical cycles.
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| 2. |
- de Melo, Michaela L., et al.
(författare)
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Linking dissolved organic matter composition and bacterioplankton communities in an Amazon floodplain system
- 2020
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Ingår i: Limnology and Oceanography. - : Wiley. - 0024-3590 .- 1939-5590. ; 65:1, s. 63-76
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Tidskriftsartikel (refereegranskat)abstract
- Dissolved organic matter (DOM) is the main substrate for aquatic prokaryotes, fuelling their metabolism and controlling community composition. Amazonian rivers transport and process large fluxes of terrestrial DOM, but little is known about the link between DOM composition and heterotrophic bacteria in the Amazon basin. The aims of this study were to characterize DOM composition and investigate the coupling between DOM and bacterial community composition (BCC) during a complete hydrological cycle in an Amazon floodplain system (lake Janauacá). Our study revealed a clear seasonal pattern in DOM composition through the flood pulse, which affected the amounts of autochthonous and allochthonous inputs and consequently the extent of humification, molecular weight, and aromaticity of the DOM. BCC was tightly coupled to DOM fluorescence, which was also driven by differences over the hydrological cycle, with distinct components and operational taxonomic units being simultaneously more abundant and correlating with a specific season. This coupling was particularly well reflected for three of the four identified fluorescence components, two terrestrial humic-like components (C1 and C3) and an autochthonous component (C4). Despite clear changes in DOM composition, dissolved organic carbon concentrations tended to be relatively stable throughout the year. Overall, our results suggest that BCC shifts were associated with DOM quality but not with its quantity (that remains relatively constant throughout the year), and that bacteria preferably use labile and freshly produced DOM in lake Janauacá.
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| 3. |
- Kehoe, Laura, et al.
(författare)
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Make EU trade with Brazil sustainable
- 2019
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Ingår i: Science. - : American Association for the Advancement of Science (AAAS). - 0036-8075 .- 1095-9203. ; 364:6438, s. 341-
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Tidskriftsartikel (övrigt vetenskapligt/konstnärligt)
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| 4. |
- Peralta-Maraver, Ignacio, et al.
(författare)
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The riverine bioreactor : An integrative perspective on biological decomposition of organic matter across riverine habitats
- 2021
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Ingår i: Science of the Total Environment. - : Elsevier BV. - 0048-9697 .- 1879-1026. ; 772
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Forskningsöversikt (refereegranskat)abstract
- Riverine ecosystems can be conceptualized as 'bioreactors' (the riverine bioreactor) which retain and decompose a wide range of organic substrates. The metabolic performance of the riverine bioreactor is linked to their community structure, the efficiency of energy transfer along food chains, and complex interactions among biotic and abiotic environmental factors. However, our understanding of the mechanistic functioning and capacity of the riverine bioreactor remains limited. We review the state of knowledge and outline major gaps in the understanding of biotic drivers of organic matter decomposition processes that occur in riverine ecosystems, across habitats, temporal dimensions, and latitudes influenced by climate change. We propose a novel, integrative analytical perspective to assess and predict decomposition processes in riverine ecosystems. We then use this model to analyse data to demonstrate that the size-spectra of a community can be used to predict decomposition rates by analysing an illustrative dataset. This modelling methodology allows comparison of the riverine bioreactors performance across habitats and at a global scale. Our integrative analytical approach can be applied to advance understanding of the functioning and efficiency of the riverine bioreactor as hotspots of metabolic activity. Application of insights gained from such analyses could inform the development of strategies that promote the functioning of the riverine bioreactor across global ecosystems.
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| 5. |
- Sarmento, Hugo, et al.
(författare)
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Phytoplankton species-specific release of dissolved free amino acids and their selective consumption by bacteria
- 2013
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Ingår i: Limnology and Oceanography. - : Wiley. - 0024-3590 .- 1939-5590. ; 58:3, s. 1123-1135
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Tidskriftsartikel (refereegranskat)abstract
- Despite representing only a small fraction of the ocean's dissolved organic matter pool, dissolved free amino acids (DFAA) have high turnover rates and are major nitrogen and carbon sources for bacterioplankton. Both phytoplankton and bacterioplankton assimilate and release DFAA, but their consumption and production are difficult to quantify in nature due to their short residence times (min) as dissolved monomers. We segregated DFAA production by phytoplankton and bacterial consumption by measuring individual DFAA concentrations in four axenic phytoplankton cultures during the exponential growth phase, and also after 4 d incubations in the presence of a natural bacterioplankton community. The amounts and composition of the DFAA pool varied widely among phytoplankton species. The proportion of dissolved organic carbon attributed to DFAA varied among cultures. The picoeukaryotic prasinophyte, Micromonas pusilla, released higher amounts of DFAA than the other species tested (diatoms and dinoflagellate), especially alanine, which has been reported as the dominant individual DFAA in some oligotrophic environments. Community structure of heterotrophic prokaryotes responded to differences in the quality of organic matter released among microalgal species, with Roseobacter-related bacteria responding strongly to exudate composition. Our results demonstrate the specificity of DFAA extracellular release among several algal species and their preferential uptake by members of bacterial communities.
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