| 1. |
- Beal, Jacob, et al.
(författare)
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Robust estimation of bacterial cell count from optical density
- 2020
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Ingår i: Communications Biology. - : Springer Science and Business Media LLC. - 2399-3642. ; 3:1
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Tidskriftsartikel (refereegranskat)abstract
- Optical density (OD) is widely used to estimate the density of cells in liquid culture, but cannot be compared between instruments without a standardized calibration protocol and is challenging to relate to actual cell count. We address this with an interlaboratory study comparing three simple, low-cost, and highly accessible OD calibration protocols across 244 laboratories, applied to eight strains of constitutive GFP-expressing E. coli. Based on our results, we recommend calibrating OD to estimated cell count using serial dilution of silica microspheres, which produces highly precise calibration (95.5% of residuals <1.2-fold), is easily assessed for quality control, also assesses instrument effective linear range, and can be combined with fluorescence calibration to obtain units of Molecules of Equivalent Fluorescein (MEFL) per cell, allowing direct comparison and data fusion with flow cytometry measurements: in our study, fluorescence per cell measurements showed only a 1.07-fold mean difference between plate reader and flow cytometry data.
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| 2. |
- Chuang, Yi-De, et al.
(författare)
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Modular soft x-ray spectrometer for applications in energy sciences and quantum materials
- 2017
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Ingår i: Review of Scientific Instruments. - : AIP Publishing. - 1089-7623 .- 0034-6748. ; 88:1
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Tidskriftsartikel (refereegranskat)abstract
- Over the past decade, the advances in grating-based soft X-ray spectrometers have revolutionizedthe soft X-ray spectroscopies in materials research. However, these novel spectrometers are mostlydedicated designs, which cannot be easily adopted for applications with diverging demands. Here wepresent a versatile spectrometer design concept based on the Hettrick-Underwood optical scheme thatuses modular mechanical components. The spectrometer’s optics chamber can be used with gratingsoperated in either inside or outside orders, and the detector assembly can be reconfigured accordingly.The spectrometer can be designed to have high spectral resolution, exceeding 10 000 resolvingpower when using small source (∼1 µm) and detector pixels (∼5 µm) with high line density gratings(∼3000 lines/mm), or high throughput at moderate resolution. We report two such spectrometers withslightly different design goals and optical parameters in this paper. We show that the spectrometer withhigh throughput and large energy window is particularly useful for studying the sustainable energymaterials. We demonstrate that the extensive resonant inelastic X-ray scattering (RIXS) map of batterycathode material LiNi1/3Co1/3Mn1/3O2 can be produced in few hours using such a spectrometer.Unlike analyzing only a handful of RIXS spectra taken at selected excitation photon energies across theelemental absorption edges to determine various spectral features like the localized dd excitations andnon-resonant fluorescence emissions, these features can be easily identified in the RIXS maps. Studyingsuch RIXS maps could reveal novel transition metal redox in battery compounds that are sometimeshard to be unambiguously identified in X-ray absorption and emission spectra. We propose that thismodular spectrometer design can serve as the platform for further customization to meet specificscientific demands.
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| 3. |
- Chuang, Yi De, et al.
(författare)
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Momentum-resolved resonant inelastic soft X-ray scattering (qRIXS) endstation at the ALS
- 2022
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Ingår i: Journal of Electron Spectroscopy and Related Phenomena. - : Elsevier BV. - 0368-2048. ; 257
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Tidskriftsartikel (refereegranskat)abstract
- A momentum resolved resonant inelastic X-ray scattering (qRIXS) experimental station with continuously rotatable spectrometers and parallel detection is designed to operate at different beamlines at synchrotron and free electron laser (FEL) facilities. This endstation, currently located at the Advanced Light Source (ALS), has five emission ports on the experimental chamber for mounting the high-throughput modular soft X-ray spectrometers (MXS) [24]. Coupled to the rotation from the supporting hexapod, the scattered X-rays from 27.5° (forward scattering) to 152.5° (backward scattering) relative to the incident photon beam can be recorded, enabling the momentum-resolved RIXS spectroscopy. The components of this endstation are described in details, and the preliminary RIXS measurements on highly oriented pyrolytic graphite (HOPG) reveal the low energy vibronic excitations from the strong electron-phonon coupling at C K edge around σ* band. The grating upgrade option to enhance the performance at low photon energies is presented and the potential of this spectroscopy is discussed in summary.
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| 4. |
- Jia, Tao, et al.
(författare)
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Epitaxial growth of TiSe2/TiO2 heterostructure
- 2019
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Ingår i: Current Opinion in Chemical Engineering. - : Institute of Physics (IOP). - 2211-3398. ; 6:1
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Tidskriftsartikel (refereegranskat)abstract
- Here we report that TiSe2 thin films can be epitaxially grown on TiO2 substrates despite different lattice symmetry between the two materials. The TiSe2 thin films can be prepared on TiO2 via molecular beam epitaxy (MBE) in two ways: by conventional co-deposition using selenium and titanium sources, and by evaporating just selenium on reconstructed surfaces of TiO2. Both growth methods yield crystalline thin films with similar electronic band structures. TiSe2 films on TiO2 substrates exhibit large electron doping and a lack of charge density wave (CDW) order, which is different from both bulk single crystal TiSe2 and TiSe2 thin films on graphene. These phenomena can be explained by selenium vacancies in the TiSe2 films, which naturally occur when these films are grown on TiO2 substrates. Our successful growth of transition metal dichalcogenide (TMDC) films on a transition metal oxide (TMO) substrate provides a platform to further tune the electrical and optical properties of TMDC thin films.
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| 5. |
- Lu, Haiyu, et al.
(författare)
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Identification of a characteristic doping for charge order phenomena in Bi-2212 cuprates via RIXS
- 2022
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Ingår i: Physical Review B. - 2469-9969 .- 2469-9950. ; 106:15
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Tidskriftsartikel (refereegranskat)abstract
- Identifying quantum critical points (QCPs) and their associated fluctuations may hold the key to unraveling the unusual electronic phenomena observed in cuprate superconductors. Recently, signatures of quantum fluctuations associated with charge order (CO) have been inferred from the anomalous enhancement of CO excitations that accompany the reduction of the CO order parameter in the superconducting state. To gain more insight into the interplay between CO and superconductivity, here we investigate the doping dependence of this phenomenon throughout the Bi-2212 cuprate phase diagram using resonant inelastic x-ray scattering (RIXS) at the Cu L3 edge. As doping increases, the CO wave vector decreases, saturating near a commensurate value of 0.25 reciprocal lattice unit beyond a characteristic doping pc, where the correlation length becomes shorter than the apparent periodicity (4a0). Such behavior is indicative of the fluctuating nature of the CO; the proliferation of CO excitations in the superconducting state also appears strongest at pc, consistent with expected behavior at a CO QCP. Intriguingly, pc appears to be near optimal doping, where the superconducting transition temperature Tc is maximal.
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| 6. |
- Rebec, Slavko N., et al.
(författare)
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Dichotomy of the photo-induced 2-dimensional electron gas on SrTiO3 surface terminations
- 2019
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Ingår i: Proceedings of the National Academy of Sciences of the United States of America. - : NATL ACAD SCIENCES. - 0027-8424 .- 1091-6490. ; 116:34, s. 16687-16691
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Tidskriftsartikel (refereegranskat)abstract
- Oxide materials are important candidates for the next generation of electronics due to a wide array of desired properties, which they can exhibit alone or when combined with other materials. While SrTiO3 (STO) is often considered a prototypical oxide, it, too, hosts a wide array of unusual properties, including a 2-dimensional electron gas (2DEG), which can form at the surface when exposed to ultraviolet (UV) light. Using layer-by-layer growth of high-quality STO films, we show that the 2DEG only forms with the SrO termination and not with the TiO2 termination, contrary to expectation. This dichotomy of the observed angle-resolved photoemission spectroscopy (ARPES) spectra is similarly seen in BaTiO3 (BTO), in which the 2DEG is only observed for BaO-terminated films. These results will allow for a deeper understanding and better control of the electronic structure of titanate films, substrates, and heterostructures.
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| 7. |
- Xu, Ke-Jun, et al.
(författare)
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Bogoliubov quasiparticle on the gossamer Fermi surface in electron-doped cuprates
- 2023
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Ingår i: Nature Physics. - 1745-2473 .- 1745-2481. ; 19:12, s. 1834-1840
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Tidskriftsartikel (refereegranskat)abstract
- Electron-doped cuprates consistently exhibit strong antiferromagnetic correlations, leading to the prevalent belief that antiferromagnetic spin fluctuations mediate Cooper pairing in these unconventional superconductors. However, early investigations showed that although antiferromagnetic spin fluctuations create the largest pseudogap at hot spots in momentum space, the superconducting gap is also maximized at these locations. This presented a paradox for spin-fluctuation-mediated pairing: Cooper pairing is strongest at momenta where the normal-state low-energy spectral weight is most suppressed. Here we investigate this paradox and find evidence that a gossamer—meaning very faint—Fermi surface can provide an explanation for these observations. We study Nd2–xCexCuO4 using angle-resolved photoemission spectroscopy and directly observe the Bogoliubov quasiparticles. First, we resolve the previously observed reconstructed main band and the states gapped by the antiferromagnetic pseudogap around the hot spots. Within the antiferromagnetic pseudogap, we also observe gossamer states with distinct dispersion, from which coherence peaks of Bogoliubov quasiparticles emerge below the superconducting critical temperature. Moreover, the direct observation of a Bogoliubov quasiparticle permits an accurate determination of the superconducting gap, yielding a maximum value an order of magnitude smaller than the pseudogap, establishing the distinct nature of these two gaps. We propose that orientation fluctuations in the antiferromagnetic order parameter are responsible for the gossamer states.
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| 8. |
- Xu, Ke Jun, et al.
(författare)
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Bogoliubov quasiparticle on the gossamer Fermi surface in electron-doped cuprates
- 2023
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Ingår i: Nature Physics. - : Springer Nature. - 1745-2473 .- 1745-2481. ; 19:12, s. 1834-1840
-
Tidskriftsartikel (refereegranskat)abstract
- Electron-doped cuprates consistently exhibit strong antiferromagnetic correlations, leading to the prevalent belief that antiferromagnetic spin fluctuations mediate Cooper pairing in these unconventional superconductors. However, early investigations showed that although antiferromagnetic spin fluctuations create the largest pseudogap at hot spots in momentum space, the superconducting gap is also maximized at these locations. This presented a paradox for spin-fluctuation-mediated pairing: Cooper pairing is strongest at momenta where the normal-state low-energy spectral weight is most suppressed. Here we investigate this paradox and find evidence that a gossamer—meaning very faint—Fermi surface can provide an explanation for these observations. We study Nd2–xCexCuO4 using angle-resolved photoemission spectroscopy and directly observe the Bogoliubov quasiparticles. First, we resolve the previously observed reconstructed main band and the states gapped by the antiferromagnetic pseudogap around the hot spots. Within the antiferromagnetic pseudogap, we also observe gossamer states with distinct dispersion, from which coherence peaks of Bogoliubov quasiparticles emerge below the superconducting critical temperature. Moreover, the direct observation of a Bogoliubov quasiparticle permits an accurate determination of the superconducting gap, yielding a maximum value an order of magnitude smaller than the pseudogap, establishing the distinct nature of these two gaps. We propose that orientation fluctuations in the antiferromagnetic order parameter are responsible for the gossamer states.
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