| 1. |
- Stacey, Simon N, et al.
(författare)
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A germline variant in the TP53 polyadenylation signal confers cancer susceptibility.
- 2011
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Ingår i: Nature Genetics. - : Springer Science and Business Media LLC. - 1061-4036 .- 1546-1718. ; 43:11, s. 1098-103
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Tidskriftsartikel (refereegranskat)abstract
- To identify new risk variants for cutaneous basal cell carcinoma, we performed a genome-wide association study of 16 million SNPs identified through whole-genome sequencing of 457 Icelanders. We imputed genotypes for 41,675 Illumina SNP chip-typed Icelanders and their relatives. In the discovery phase, the strongest signal came from rs78378222[C] (odds ratio (OR) = 2.36, P = 5.2 × 10(-17)), which has a frequency of 0.0192 in the Icelandic population. We then confirmed this association in non-Icelandic samples (OR = 1.75, P = 0.0060; overall OR = 2.16, P = 2.2 × 10(-20)). rs78378222 is in the 3' untranslated region of TP53 and changes the AATAAA polyadenylation signal to AATACA, resulting in impaired 3'-end processing of TP53 mRNA. Investigation of other tumor types identified associations of this SNP with prostate cancer (OR = 1.44, P = 2.4 × 10(-6)), glioma (OR = 2.35, P = 1.0 × 10(-5)) and colorectal adenoma (OR = 1.39, P = 1.6 × 10(-4)). However, we observed no effect for breast cancer, a common Li-Fraumeni syndrome tumor (OR = 1.06, P = 0.57, 95% confidence interval 0.88-1.27).
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| 2. |
- Bhattarai, Biplabi, et al.
(författare)
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Influence of soil warming magnitude and duration on soluble sugar pool in fine roots and rhizomes of subarctic grasslands: Differences at species and plant community level adaptation
- 2024
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Ingår i: Plant Stress. - : Elsevier. - 2667-064X. ; 11
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Tidskriftsartikel (refereegranskat)abstract
- Subarctic regions are warming faster than other parts of the globe, and warming is expected to impact carbon (C) assimilation and its allocation into plant biomass and soluble sugars in plant tissues. We analyzed the concentration of soluble sugars (fructose, glucose, and sucrose) in fine roots and rhizomes for three dominant species: Anthoxanthum odoratum, Equisetum spp., and Ranunculus acris. We also examined the concentration and pool of soluble sugars at the plant community level with the aim to investigate the impact of soil warming duration [medium-term (11 years, MTW) vs. long-term (> 60 years, LTW)] and magnitude on soluble sugars in geothermally warmed subarctic grasslands. Among three species, R. acris exhibited the highest concentration of soluble sugars in both fine roots and rhizomes. Comparing total soluble sugar (TSS) between fine roots and rhizomes, rhizomes exhibited a higher concentration in A. odoratum and Equisetum. spp., whereas fine roots had a higher concentration in R. acris. Soil warming did not affect TSS in E. spp. and R. acris, while in A. odoratum, it increased TSS in fine roots and rhizomes in MTW and only in fine roots in LTW. At the plant community level in MTW, soil warming did not affect the soluble sugar concentration in fine roots. However, it increased the TSS and sucrose concentration in rhizomes, which positively correlated with the abundance of grasses. The TSS pool in fine roots decreased with soil warming in MTW, mainly due to a decline in fine root biomass that described 70 % of the decline in the TSS pool. Also, in LTW, soil warming decreased the TSS pool in fine roots, but 74 % of the decline was mainly driven by decreased soluble sugar concentration, specifically that of sucrose, and not by the change in fine root biomass. The decrease in sucrose concentration in fine roots in LTW was related to a decrease in the abundance of A. odoratum. We highlight the species-specific and organ-specific differences in soluble sugar concentration in subarctic grasslands. We observed elevated soluble sugars in A. odoratum's fine roots and rhizomes due to soil warming, while the overall community-level soluble sugar pool in fine roots decreased. We conclude that in warmed subarctic grasslands, the community-level soluble sugar pool in fine roots and rhizomes depends upon changes in biomass, soluble sugar concentration, and plant community structure.
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| 3. |
- Bhattarai, Biplabi, et al.
(författare)
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Soil warming duration and magnitude affect the dynamics of fine roots and rhizomes and associated C and N pools in subarctic grasslands
- 2023
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Ingår i: Annals of Botany. - : Oxford University Press. - 0305-7364 .- 1095-8290. ; 132:2, s. 269-279
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Tidskriftsartikel (refereegranskat)abstract
- BACKGROUND AND AIMS: The response of subarctic grassland's below-ground to soil warming is key to understanding this ecosystem's adaptation to future climate. Functionally different below-ground plant organs can respond differently to changes in soil temperature (Ts). We aimed to understand the below-ground adaptation mechanisms by analysing the dynamics and chemistry of fine roots and rhizomes in relation to plant community composition and soil chemistry, along with the duration and magnitude of soil warming.METHODS: We investigated the effects of the duration [medium-term warming (MTW; 11 years) and long-term warming (LTW; > 60 years)] and magnitude (0-8.4 °C) of soil warming on below-ground plant biomass (BPB), fine root biomass (FRB) and rhizome biomass (RHB) in geothermally warmed subarctic grasslands. We evaluated the changes in BPB, FRB and RHB and the corresponding carbon (C) and nitrogen (N) pools in the context of ambient, Ts < +2 °C and Ts > +2 °C scenarios.KEY RESULTS: BPB decreased exponentially in response to an increase in Ts under MTW, whereas FRB declined under both MTW and LTW. The proportion of rhizomes increased and the C-N ratio in rhizomes decreased under LTW. The C and N pools in BPB in highly warmed plots under MTW were 50 % less than in the ambient plots, whereas under LTW, C and N pools in warmed plots were similar to those in non-warmed plots. Approximately 78 % of the variation in FRB, RHB, and C and N concentration and pools in fine roots and rhizomes was explained by the duration and magnitude of soil warming, soil chemistry, plant community functional composition, and above-ground biomass. Plant's below-ground biomass, chemistry and pools were related to a shift in the grassland's plant community composition - the abundance of ferns increased and BPB decreased towards higher Ts under MTW, while the recovery of below-ground C and N pools under LTW was related to a higher plant diversity.CONCLUSION: Our results indicate that plant community-level adaptation of below ground to soil warming occurs over long periods. We provide insight into the potential adaptation phases of subarctic grasslands.
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| 4. |
- Fang, Chao, et al.
(författare)
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Decadal soil warming decreased vascular plant above and belowground production in a subarctic grassland by inducing nitrogen limitation
- 2023
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Ingår i: New Phytologist. - : John Wiley & Sons. - 0028-646X .- 1469-8137. ; 240:2, s. 565-576
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Tidskriftsartikel (refereegranskat)abstract
- Below and aboveground vegetation dynamics are crucial in understanding how climate warming may affect terrestrial ecosystem carbon cycling. In contrast to aboveground biomass, the response of belowground biomass to long-term warming has been poorly studied.Here, we characterized the impacts of decadal geothermal warming at two levels (on average +3.3°C and +7.9°C) on below and aboveground plant biomass stocks and production in a subarctic grassland.Soil warming did not change standing root biomass and even decreased fine root production and reduced aboveground biomass and production. Decadal soil warming also did not significantly alter the root–shoot ratio. The linear stepwise regression model suggested that following 10 yr of soil warming, temperature was no longer the direct driver of these responses, but losses of soil N were. Soil N losses, due to warming-induced decreases in organic matter and water retention capacity, were identified as key driver of the decreased above and belowground production. The reduction in fine root production was accompanied by thinner roots with increased specific root area.These results indicate that after a decade of soil warming, plant productivity in the studied subarctic grassland was affected by soil warming mainly by the reduction in soil N.
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| 5. |
- Sigurdsson, Bjarni D., et al.
(författare)
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Geothermal ecosystems as natural climate change experiments : The ForHot research site in Iceland as a case study
- 2016
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Ingår i: Icelandic Agricultural Sciences. - 1670-567X. ; 29:1, s. 53-71
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Tidskriftsartikel (refereegranskat)abstract
- This article describes how natural geothermal soil temperature gradients in Iceland have been used to study terrestrial ecosystem responses to soil warming. The experimental approach was evaluated at three study sites in southern Iceland one grassland site that has been warm for at least 50 years (GO), and another comparable grassland site (GN) and a Sitka spruce plantation (FN) site that have both been warmed since an earthquake took place in 2008. Within each site type, five ca. 50 m long transects, with six permanent study plots each, were established across the soil warming gradients, spanning from unwarmed control conditions to gradually warmer soils. It was attempted to select the plots so the annual warming levels would be ca. +1, +3, +5, +10 and +20 °C within each transect. Results of continuous measurements of soil temperature (Ts) from 2013-2015 revealed that the soil warming was relatively constant and followed the seasonal Ts cycle of the unwarmed control plots. Volumetric water content in the top 5 cm of soil was repeatedly surveyed during 2013-2016. The grassland soils were wetter than the FN soils, but they had sometimes some significant warming-induced drying in the surface layer of the warmest plots, in contrast to FN. Soil chemistry did not show any indications that geothermal water had reached the root zone, but soil pH did increase somewhat with warming, which was probably linked to vegetation changes. As expected, the potential decomposition rate of organic matter increased significantly with warming. It was concluded that the natural geothermal gradients at the ForHot sites in Iceland offered realistic conditions for studying terrestrial ecosystem responses to warming with minimal artefacts.
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| 6. |
- Verbrigghe, Niel, et al.
(författare)
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Soil carbon loss in warmed subarctic grasslands is rapid and restricted to topsoil
- 2022
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Ingår i: Biogeosciences. - : Copernicus. - 1726-4170 .- 1726-4189. ; 19:14, s. 3381-3393
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Tidskriftsartikel (refereegranskat)abstract
- Global warming may lead to carbon transfers from soils to the atmosphere, yet this positive feedback to the climate system remains highly uncertain, especially in subsoils . Using natural geothermal soil warming gradients of up to +6.4 °C in subarctic grasslands , we show that soil organic carbon (SOC) stocks decline strongly and linearly with warming (-2.8tha-1 °C-1). Comparison of SOC stock changes following medium-term (5 and 10 years) and long-term (>50 years) warming revealed that all SOC stock reduction occurred within the first 5 years of warming, after which continued warming no longer reduced SOC stocks. This rapid equilibration of SOC observed in Andosol suggests a critical role for ecosystem adaptations to warming and could imply short-lived soil carbon-climate feedbacks. Our data further revealed that the soil C loss occurred in all aggregate size fractions and that SOC stock reduction was only visible in topsoil (0-10cm). SOC stocks in subsoil (10-30cm), where plant roots were absent, showed apparent conservation after >50 years of warming. The observed depth-dependent warming responses indicate that explicit vertical resolution is a prerequisite for global models to accurately project future SOC stocks for this soil type and should be investigated for soils with other mineralogies.
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| 7. |
- Walker, Tom W.N., et al.
(författare)
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A systemic overreaction to years versus decades of warming in a subarctic grassland ecosystem
- 2020
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Ingår i: Nature Ecology and Evolution. - : Springer Science and Business Media LLC. - 2397-334X. ; 4:1, s. 101-108
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Tidskriftsartikel (refereegranskat)abstract
- Temperature governs most biotic processes, yet we know little about how warming affects whole ecosystems. Here we examined the responses of 128 components of a subarctic grassland to either 5–8 or >50 years of soil warming. Warming of >50 years drove the ecosystem to a new steady state possessing a distinct biotic composition and reduced species richness, biomass and soil organic matter. However, the warmed state was preceded by an overreaction to warming, which was related to organism physiology and was evident after 5–8 years. Ignoring this overreaction yielded errors of >100% for 83 variables when predicting their responses to a realistic warming scenario of 1 °C over 50 years, although some, including soil carbon content, remained stable after 5–8 years. This study challenges long-term ecosystem predictions made from short-term observations, and provides a framework for characterization of ecosystem responses to sustained climate change.
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| 8. |
- Árnadóttir, Thóra, et al.
(författare)
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Glacial rebound and plate spreading : results from the first countrywide GPS observations in Iceland
- 2009
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Ingår i: Geophysical Journal International. - 0956-540X .- 1365-246X. ; 177:2, s. 691-716
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Forskningsöversikt (refereegranskat)abstract
- Iceland is one of the few places on Earth where a divergent plate boundary can be observed on land. Direct observations of crustal deformation for the whole country are available for the first time from nationwide Global Positioning System (GPS) campaigns in 1993 and 2004. The plate spreading across the island is imaged by the horizontal velocity field and high uplift rates (>= 10 mm yr(-1)) are observed over a large part of central and southeastern Iceland. Several earthquakes, volcanic intrusions and eruptions occurred during the time spanned by the measurements, causing local disturbances of the deformation field. After correcting for the largest earthquakes during the observation period, we calculate the strain rate field and find that the main feature of the field is the extension across the rift zones, subparallel to the direction of plate motion. Kinematic models of the horizontal plate spreading signal indicate a slightly elevated rate of spreading in the Northern Volcanic Zone (NVZ) (23 +/- 2 mm yr(-1)), while the rates at the other plate boundary segments agree fairly well with the predicted rate of plate spreading (similar to 20 mm yr(-1)) across Iceland. The horizontal ISNET velocities across north Iceland therefore indicate that the excessive spreading rate (>30 mm yr(-1)) observed by GPS in 1987-1992 following the 1975-1984 Krafla rifting episode was significantly slower during 1993-2004. We model the vertical velocities using glacial isostatic adjustment (GIA) due to the recent thinning of the largest glaciers in Iceland. A layered earth model with a 10-km thick elastic layer, underlain by a 30-km thick viscoelastic layer with viscosity 1 x 10(20) Pa s, over a half-space with viscosity similar to 1 x 10(19) Pa s can explain the broad area of uplift in central and southeastern Iceland. A wide area of significant residual uplift ( up to 8 mm yr(-1)) is evident in north Iceland after we subtract the rebound signal from the observed rates, whereas the Reykjanes Peninsula and the Western Volcanic Zone (WVZ) appear to be subsiding at a rate of 4-8 mm yr(-1). We observe a coherent pattern of small but significant residual horizontal motion (up to 3 mm yr(-1)) away from Vatnajokull and the smaller glaciers that is most likely caused by glacial rebound. Our study demonstrates that the velocity field over a large part of Iceland is affected by deglaciation and that this effect needs to be considered when interpreting deformation data to monitor subglacial volcanoes in Iceland.
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