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| 2. |
- Wang, Zhaoming, et al.
(författare)
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Imputation and subset-based association analysis across different cancer types identifies multiple independent risk loci in the TERT-CLPTM1L region on chromosome 5p15.33
- 2014
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Ingår i: Human Molecular Genetics. - : Oxford University Press (OUP). - 0964-6906 .- 1460-2083. ; 23:24, s. 6616-6633
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Tidskriftsartikel (refereegranskat)abstract
- Genome-wide association studies (GWAS) have mapped risk alleles for at least 10 distinct cancers to a small region of 63 000 bp on chromosome 5p15.33. This region harbors the TERT and CLPTM1L genes; the former encodes the catalytic subunit of telomerase reverse transcriptase and the latter may play a role in apoptosis. To investigate further the genetic architecture of common susceptibility alleles in this region, we conducted an agnostic subset-based meta-analysis (association analysis based on subsets) across six distinct cancers in 34 248 cases and 45 036 controls. Based on sequential conditional analysis, we identified as many as six independent risk loci marked by common single-nucleotide polymorphisms: five in the TERT gene (Region 1: rs7726159, P = 2.10 × 10(-39); Region 3: rs2853677, P = 3.30 × 10(-36) and PConditional = 2.36 × 10(-8); Region 4: rs2736098, P = 3.87 × 10(-12) and PConditional = 5.19 × 10(-6), Region 5: rs13172201, P = 0.041 and PConditional = 2.04 × 10(-6); and Region 6: rs10069690, P = 7.49 × 10(-15) and PConditional = 5.35 × 10(-7)) and one in the neighboring CLPTM1L gene (Region 2: rs451360; P = 1.90 × 10(-18) and PConditional = 7.06 × 10(-16)). Between three and five cancers mapped to each independent locus with both risk-enhancing and protective effects. Allele-specific effects on DNA methylation were seen for a subset of risk loci, indicating that methylation and subsequent effects on gene expression may contribute to the biology of risk variants on 5p15.33. Our results provide strong support for extensive pleiotropy across this region of 5p15.33, to an extent not previously observed in other cancer susceptibility loci.
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| 3. |
- Ade, Peter, et al.
(författare)
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The Simons Observatory : science goals and forecasts
- 2019
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Ingår i: Journal of Cosmology and Astroparticle Physics. - : IOP Publishing. - 1475-7516. ; :2
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Tidskriftsartikel (refereegranskat)abstract
- The Simons Observatory (SO) is a new cosmic microwave background experiment being built on Cerro Toco in Chile, due to begin observations in the early 2020s. We describe the scientific goals of the experiment, motivate the design, and forecast its performance. SO will measure the temperature and polarization anisotropy of the cosmic microwave background in six frequency bands centered at: 27, 39, 93, 145, 225 and 280 GHz. The initial con figuration of SO will have three small-aperture 0.5-m telescopes and one large-aperture 6-m telescope, with a total of 60,000 cryogenic bolometers. Our key science goals are to characterize the primordial perturbations, measure the number of relativistic species and the mass of neutrinos, test for deviations from a cosmological constant, improve our understanding of galaxy evolution, and constrain the duration of reionization. The small aperture telescopes will target the largest angular scales observable from Chile, mapping approximate to 10% of the sky to a white noise level of 2 mu K-arcmin in combined 93 and 145 GHz bands, to measure the primordial tensor-to-scalar ratio, r, at a target level of sigma(r) = 0.003. The large aperture telescope will map approximate to 40% of the sky at arcminute angular resolution to an expected white noise level of 6 mu K-arcmin in combined 93 and 145 GHz bands, overlapping with the majority of the Large Synoptic Survey Telescope sky region and partially with the Dark Energy Spectroscopic Instrument. With up to an order of magnitude lower polarization noise than maps from the Planck satellite, the high-resolution sky maps will constrain cosmological parameters derived from the damping tail, gravitational lensing of the microwave background, the primordial bispectrum, and the thermal and kinematic Sunyaev-Zel'dovich effects, and will aid in delensing the large-angle polarization signal to measure the tensor-to-scalar ratio. The survey will also provide a legacy catalog of 16,000 galaxy clusters and more than 20,000 extragalactic sources.
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| 4. |
- Cockell, Charles S., et al.
(författare)
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Subsurface scientific exploration of extraterrestrial environments (MINAR 5) : analogue science, technology and education in the Boulby Mine, UK
- 2019
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Ingår i: International Journal of Astrobiology. - : Cambridges Institutes Press. - 1473-5504 .- 1475-3006. ; 18:2, s. 157-182
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Tidskriftsartikel (refereegranskat)abstract
- The deep subsurface of other planetary bodies is of special interest for robotic and human exploration. The subsurface provides access to planetary interior processes, thus yielding insights into planetary formation and evolution. On Mars, the subsurface might harbour the most habitable conditions. In the context of human exploration, the subsurface can provide refugia for habitation from extreme surface conditions. We describe the fifth Mine Analogue Research (MINAR 5) programme at 1 km depth in the Boulby Mine, UK in collaboration with Spaceward Bound NASA and the Kalam Centre, India, to test instruments and methods for the robotic and human exploration of deep environments on the Moon and Mars. The geological context in Permian evaporites provides an analogue to evaporitic materials on other planetary bodies such as Mars. A wide range of sample acquisition instruments (NASA drills, Small Planetary Impulse Tool (SPLIT) robotic hammer, universal sampling bags), analytical instruments (Raman spectroscopy, Close-Up Imager, Minion DNA sequencing technology, methane stable isotope analysis, biomolecule and metabolic life detection instruments) and environmental monitoring equipment (passive air particle sampler, particle detectors and environmental monitoring equipment) was deployed in an integrated campaign. Investigations included studying the geochemical signatures of chloride and sulphate evaporitic minerals, testing methods for life detection and planetary protection around human-tended operations, and investigations on the radiation environment of the deep subsurface. The MINAR analogue activity occurs in an active mine, showing how the development of space exploration technology can be used to contribute to addressing immediate Earth-based challenges. During the campaign, in collaboration with European Space Agency (ESA), MINAR was used for astronaut familiarization with future exploration tools and techniques. The campaign was used to develop primary and secondary school and primary to secondary transition curriculum materials on-site during the campaign which was focused on a classroom extra vehicular activity simulation.
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| 5. |
- Suga, Mitsuo, et al.
(författare)
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Recent progress in scanning electron microscopy for the characterization of fine structural details of nano materials
- 2014
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Ingår i: Progress in Solid State Chemistry. - : Elsevier BV. - 0079-6786 .- 1873-1643. ; 42:1-2, s. 1-21
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Forskningsöversikt (refereegranskat)abstract
- Research concerning nano-materials (metal-organic frameworks (MOFs), zeolites, mesoporous silicas, etc.) and the nano-scale, including potential barriers for the particulates to diffusion to/from is of increasing importance to the understanding of the catalytic utility. of porous materials when combined with any potential super structures (such as hierarchically porous materials). However, it is difficult to characterize the structure of for example MOFs via X-ray powder diffraction because of the serious overlapping of reflections caused by their large unit cells, and it is also difficult to directly observe the opening of surface pores using ordinary methods. Electron-microscopic methods including high-resolution scanning electron microscopy (HRSEM) have therefore become imperative for the above challenges. Here, we present the theory and practical application of recent advances such as through-the-lens detection systems, which permit a reduced landing energy and the selection of high-resolution, topographically specific emitted electrons, even from electrically insulating nano-materials.
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| 6. |
- Brent, Rhea, et al.
(författare)
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Coaxial Core Shell Overgrowth of Zeolite L - Dependence on Original Crystal Growth Mechanism
- 2010
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Ingår i: Crystal Growth & Design. - : American Chemical Society (ACS). - 1528-7483 .- 1528-7505. ; 10:12, s. 5182-5186
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Tidskriftsartikel (refereegranskat)abstract
- In this study, the first reported core-shell material combining zeolite L (LTL) and barium-exchanged zeolite L (Ba-LTL) is described The use of atomic force microscopy to probe the LTL surface growth mechanism was employed to understand the growth pattern of the resultant Ba-LTL coaxial overgrowth layer Additionally the dependence of the original crystal surface on the resulting habit of the Ba-LTL core-shell layer is explained High-resolution scanning electron microscopy (HRSEM) was employed to observe the fine detail of the Ba-LTL layer, and cross-sectional polishing was used to view the boundary between the two crystalline materials
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| 7. |
- Brent, Rhea, et al.
(författare)
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Unstitching the Nanoscopic Mystery of Zeolite Crystal Formation
- 2010
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Ingår i: Journal of the American Chemical Society. - : American Chemical Society (ACS). - 0002-7863 .- 1520-5126. ; 132:39, s. 13858-13868
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Tidskriftsartikel (refereegranskat)abstract
- A molecular-scale understanding of crystal growth is critical to the development of important materials such as pharmaceuticals, semiconductors and catalysts. Only recently has this been possible with the advent of atomic force microscopy that permits observation of nanoscopic features on solid surfaces under a liquid or solution environment. This allows in Situ measurement of important chemical transformations such as crystal growth and dissolution. Further, the microscope can access not only an accurate height measurement of surface topography, important to deduce structural elements, but also the forces involved during nanoscopic processes. We have discovered that it is possible to use these features to "illuminate" critical nanoscopic chemical events at crystal surfaces and at the same time extract the associated energies and unstitch the details of the stepwise mechanism of growth and dissolution. This approach has been developed using nanoporous crystals of the heterogeneous catalyst zeolite L; however, in principle the approach could be adapted to many crystal growth problems.
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| 8. |
- Cubillas, Pablo, et al.
(författare)
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AFM and HRSEM Invesitigation of Zeolite A Crystal Growth. Part 1 : In the Absence of Organic Additives
- 2011
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Ingår i: The Journal of Physical Chemistry C. - : American Chemical Society (ACS). - 1932-7447 .- 1932-7455. ; 115:25, s. 12567-12574
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Tidskriftsartikel (refereegranskat)abstract
- The crystallization of zeolite A by the verified synthesis method was studied by means of high-resolution scanning electron microscopy (HRSEM) and atomic force microscopy (AFM). These methods show an evolution in the growth mode of zeolite A from an adhesive type at the beginning of the synthesis (high supersaturation) to birth-and-spread growth at the end of the synthesis (low supersaturation). Additionally, HRSEM provides direct proof on the formation of zeolite A crystals at the surface of the amorphous gel and the aggregation of crystals at early stages of synthesis, which leads to intergrowth formation. For the first time, high-resolution AFM images were taken on the {110} and {111} faces of zeolite A. Growth on {110} faces takes place by a birth-and-spread mechanism, and the shape of the terraces is rectangular, with growth along the < 100 > directions being twice as fast as in the < 110 > directions. Growth on the {111} faces also takes place by a birth-and-spread mechanism via triangular-shaped terraces with edges parallel to < 110 > directions. Possible surface terminations for both faces are discussed, and crystal habit and surface topography are modeled by Monte Carlo simulations.
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| 9. |
- Cubillas, Pablo, et al.
(författare)
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Atomic Force Microscopy and High Resolution Scanning Electron Microscopy Investigation of Zeolite A Crystal Growth. Part 2 : In Presence of Organic Additives
- 2014
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Ingår i: The Journal of Physical Chemistry C. - : American Chemical Society (ACS). - 1932-7447 .- 1932-7455. ; 118:40, s. 23092-23099
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Tidskriftsartikel (refereegranskat)abstract
- The nanoscopic details of the crystal growth of zeolite. A in the presence of the organic modifiers. diethanolmaine (DEA) and triethanolamine (TEA) has been determined using a combination of atomic force microscopy (AFM) and high-resolution scanning electron microscopy (HRSEM) coupled with Monte Carlo simulations. Crystallization of zeolite A in the presence of TEA was faster than when the growing solution contained DEA. In addition, the morphology of the final zeolite A crystals depended on the type of organic molecule, with TEA producing crystals bound only by {100} facets and DEA leading to the formation of relatively large {110} faces. These features can be explained in terms of the relative Si/Al in the growing medium and its control due to the different affinity of the organic molecules to Al. In addition, synthesis Si/Al in the growing medium and its contorl due to the different affinity of the organic molecules to Al. In additon synthesis performed at 90 degrees C showed the apperance of {211} facets Careful review of the HRSEM and AFM images, in addition to comparion with the MC simulations, reveals that these are in fact pseudofacets products of the slow dissolution of the metastable zeolite. A crsytals. This proves that the final habit of the LTA crystals can be governed by very small changes in saturation of the growing medium, and control of this parameter can prove advantageous when designing crystals for industrial applications.
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| 10. |
- Cubillas, Pablo, et al.
(författare)
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Spiral Growth on Nanoporous Silicoaluminophosphate STA-7 as Observed by Atomic Force Microscopy
- 2009
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Ingår i: Crystal Growth & Design. - : American Chemical Society (ACS). - 1528-7483 .- 1528-7505. ; 9:9, s. 4041-4050
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Tidskriftsartikel (refereegranskat)abstract
- Atomic force microscopy was used to study the surface of STA-7 crystals. STA-7 is a silicoaluminophosphate, nanoporous solid formed by interlinked double six ring units (D6R). Observations showed the formation of three distinct types of spirals at tow supersaturation conditions. The {001} face shows spirals with isotropic shapes and a Burgers vector of 0.9 nm, which corresponds to one D6R or one unit cell along the < 001 > direction. The {100} face contains two distinct types of spirals. The first has a Burgers vector of 0.9 rim, or half a unit cell along < 100 >. This dislocation produces a change in the ""stacking"" sequence of the D6Rs generating all overgrowth with the AEI structure. The second type is an interlaced spiral and is generated by a dislocation with a Burgers vector of 1.8 nm or one unit cell, leading to the formation of two substeps each with a different growth anisotropy. This anisotropy is directed by the shape of the substep and the energetics of template attachment. The preponderance of a surface coating of a secondary phase will have significant consequences on applications reliant on intracrystalline diffusion, such as catalysis, where, owing to diffusion limitations, the outermost structure dominates the functional properties.
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