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| 2. |
- Alsved, Malin, et al.
(författare)
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Sources of Airborne Norovirus in Hospital Outbreaks
- 2020
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Ingår i: Clinical Infectious Diseases. - : Oxford University Press (OUP). - 1537-6591 .- 1058-4838. ; 70:10, s. 2023-2028
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Tidskriftsartikel (refereegranskat)abstract
- BACKGROUND: Noroviruses are the major cause of viral gastroenteritis. Disease transmission is difficult to prevent and outbreaks in healthcare facilities commonly occur. Contact with infected persons and contaminated environments are believed to be the main routes of transmission. However, noroviruses have recently been found in aerosols and airborne transmission has been suggested. The aim of our study was to investigate associations between symptoms of gastroenteritis and presence of airborne norovirus, and to investigate the size of norovirus carrying particles.METHODS: Air sampling was repeatedly performed close to 26 patients with norovirus infections. Samples were analysed for norovirus RNA by RT-qPCR. The times since the patients' last episodes of vomiting and diarrhoea were recorded. Size separating aerosol particle collection was also performed in ward corridors.RESULTS: Norovirus RNA was found in 21 (24%) of 86 air samples from 10 different patients. Only air samples during outbreaks, or before a succeeding outbreak, tested positive for norovirus RNA. Airborne norovirus RNA was also strongly associated with a shorter time period since the last vomiting episode (odds ratio 8.1, p=0.04 within 3 hours since the last vomiting episode). The concentration of airborne norovirus ranged from 5-215 copies/m3, and detectable amounts of norovirus RNA were found in particles <0.95 µm and >4.51 µm.CONCLUSIONS: The results suggest that recent vomiting is the major source of airborne norovirus and imply a connection between airborne norovirus and outbreaks. The presence of norovirus RNA in submicrometre particles indicates that airborne transmission can be an important transmission route.
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| 3. |
- Asker, Noomi, 1968, et al.
(författare)
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Biomarker responses in eelpouts from four coastal areas in Sweden, Denmark and Germany
- 2016
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Ingår i: Marine Environmental Research. - : Elsevier BV. - 0141-1136 .- 1879-0291. ; 120, s. 32-43
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Tidskriftsartikel (refereegranskat)abstract
- To increase our understanding of possible chemical impacts on coastal fish populations in the Baltic Sea, Kattegat and Skagerrak, the viviparous eelpout (Zoarces viviparus) was used as sentinel species in two major sampling campaigns (spring and autumn) in 16 different coastal sites. Condition factor (CF), liver somatic index (LSI), gonad somatic index (GSI) were measured and the activity of the hepatic enzymes ethoxyresorufin-O-deethylase (EROD), glutathione reductase GR), glutathione S-transferase (GST), catalase (CAT) and muscular activity of acetylcholinesterase (AChE) were assessed. PAH metabolites in bile were also analyzed. The most notable finding in the data set was the low EROD activity in eelpouts collected at the relatively polluted region in Germany compared to the other regions, which could be due to an inhibition of the CYP1A-system or to adaptation to chronic exposure of pollutants in this area. Additionally, low AChE activity was noted in the German region in the autumn campaign and low AChE activity detected in the Danish region in the spring campaign. These differences suggest possible season-specific differences in the use and release of AChE-inhibiting chemicals in the Danish and German regions. Clustering of biomarkers on site level indicated a relationship between CF and GSI and suggested that sites with a high CF contained eelpout that put a larger effort into their larvae development. Clustering of the oxidative stress markers GR, GST and CAT on the individual level reflected a possible coordinated regulation of these enzymes. Overall, the results support the importance of taking into account general regional differences and seasonal variation in biomarker activity when monitoring and assessing the effects of pollution. Despite the expected seasonal variation for most of the measured endpoint, several markers (GSI, EROD and CF) vary similarly between all selected sites in both spring and autumn. This suggests that the differences between sites for these endpoints are independent of season.
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| 4. |
- Brande-Lavridsen, Nanna, et al.
(författare)
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Abnormalities in eelpout Zoarces viviparus upon chemical exposure.
- 2013
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Ingår i: Marine Environmental Research. - : Elsevier BV. - 0141-1136 .- 1879-0291. ; 92, s. 87-94
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Tidskriftsartikel (refereegranskat)abstract
- Elevated frequencies of abnormal embryos in female eelpout Zoarces viviparus have been demonstrated in Danish, Swedish and German monitoring programmes at certain geographic locations with high levels of anthropogenic input. Pollutants present in areas with high malformation frequencies were selected and tested in a controlled laboratory experiment for their potential to induce abnormalities among eelpout embryos upon injection into pregnant eelpout. Tributyltin, 2,3,7,8-tetrachlorodibenzo-p-dioxin, pyrene, nonylphenol, 2,2',4,4'-tetrabromophenylether and heptadecafluorooctanesulfonic acid were tested, either individually or combined. Generally, the chemicals were transferred to eggs and/or embryos. Some of the exposures increased the proportion of broods with more than 10% abnormal or 5% malformed embryos, although the average percentages of abnormal development were not affected. Spinal, cranial and eye deformities were evident, similarly to what is seen in nature. Some of the exposures resulted in increased percentages of females with as well a low reproductive capacity as embryos with a low condition index.
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| 6. |
- Granberg, Maria, et al.
(författare)
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Microlitter in arctic marine benthic food chains and potential effects on sediment dwelling fauna
- 2020
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Ingår i: TemaNord report. - : Nordic Council of Ministers. ; :528
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Tidskriftsartikel (refereegranskat)abstract
- Marine litter pollution affects oceans globally and has today also made its way to the pristine arctic environment adding to the microlitter from local pollution sources. Marine litter pollution is recognized as a serious threat to the marine environment at all levels, from the UN to regional (EU, OSPAR, HELCOM) and national authorities. The risk posed by microlitter to marine biota is related to their documented ubiquity and long residence time in marine ecosystems. Risks are also mediated by intrinsic toxicity of added chemicals and potential adsorbance of other pollutants. When released into the marine environment, a major part of microlitter likely accumulate in beach sand and marine sediments either immediately or after acquiring a biofilm. It is therefore expected that benthic food chains will be key to understanding fate and effects (i.e. concentrations, potential trophic transfer and biological impact) of microlitter in the marine environment. The overall aim of the project was to determine abundance of microlitter pollution in marine sediments and benthic food chains in the Arctic, and to evaluate the abundance in relation to potential local sources and background levels. The aim was also to investigate potential effects of microplastic pollution on benthic organisms through laboratory studies using an arctic amphipod as a model organism. The field investigations in Svalbard, Norway and Greenland focused on determining microlitter particle concentrations and characteristics in marine sediments and biota collected close to and far from potential local pollution sources and pathways, i.e. outlets of untreated wastewater and effluents from a dumping site in Sisimiut, West Greenland and outlets of treated (Ny-Ålesund) and untreated (Longyearbyen) wastewater in Svalbard. Overall, higher concentrations and a higher diversity of microlitter types and polymers were found in sediments and organisms (blue mussels and cod) closer to human settlements (wastewater outlets and dumping sites) and in places where lost and/or dumped fishing gear accumulate. Thus, we can confidently conclude that local pollution sources for anthropogenic microlitter do exist in the Arctic. The experimental studies investigated whether environmentally relevant and future predicted concentrations of microplastics could impact feeding rate, microplastic ingestion, respiration and locomotion activity in an arctic sediment dwelling amphipod. The experimental results confirm previous microplastics studies on marine invertebrates showing effect only at very high concentrations not yet relevant in the arctic environment. The shape of the plastic particles was found to affect the particle fate. While microplastic fragments were ingested, short microplastic fibres attached to the carapace of the amphipods and likely obstructed normal ventilation behaviour. Furthermore, biofilm cover was found to affect the behaviour and effects of the particles. Microlitter naturally become covered by biofilms in the environment and our results stress the importance of effect experiments being carried out using naturally fouled plastics for ecological relevance. This report provides both environmental- and impact data related to microlitter pollution in the arctic marine environment. Although the levels of microplastics required to cause effects in experimental organisms in this study were much higher than what was detected in the field, there may be other species that are more sensitive than the one tested in nature. The currently relatively low microlitter concentrations detected in the field should be considered as a “window of opportunity” to act to at least reduce local pollution. Consequently, introduction of sustainable waste management and wastewater treatment should be an important focus of local management initiatives.
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| 7. |
- Haldrup, Jakob, et al.
(författare)
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FRMD6 has tumor suppressor functions in prostate cancer
- 2020
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Ingår i: Oncogene. - : Springer Science and Business Media LLC. - 1476-5594 .- 0950-9232.
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Tidskriftsartikel (refereegranskat)abstract
- Available tools for prostate cancer (PC) prognosis are suboptimal but may be improved by better knowledge about genes driving tumor aggressiveness. Here, we identified FRMD6 (FERM domain-containing protein 6) as an aberrantly hypermethylated and significantly downregulated gene in PC. Low FRMD6 expression was associated with postoperative biochemical recurrence in two large PC patient cohorts. In overexpression and CRISPR/Cas9 knockout experiments in PC cell lines, FRMD6 inhibited viability, proliferation, cell cycle progression, colony formation, 3D spheroid growth, and tumor xenograft growth in mice. Transcriptomic, proteomic, and phospho-proteomic profiling revealed enrichment of Hippo/YAP and c-MYC signaling upon FRMD6 knockout. Connectivity Map analysis and drug repurposing experiments identified pyroxamide as a new potential therapy for FRMD6 deficient PC cells. Finally, we established orthotropic Frmd6 and Pten, or Pten only (control) knockout in the ROSA26 mouse prostate. After 12 weeks, Frmd6/Pten double knockouts presented high-grade prostatic intraepithelial neoplasia (HG-PIN) and hyperproliferation, while Pten single-knockouts developed only regular PIN lesions and displayed lower proliferation. In conclusion, FRMD6 was identified as a novel tumor suppressor gene and prognostic biomarker candidate in PC.
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| 8. |
- Hassellöv, Martin, et al.
(författare)
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Progress towards monitoring of microlitter in Scandinavian marine environments
- 2018
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Ingår i: TemaNord, 2018, 551, 2018. - Copenhagen : Nordic Council of Ministers.
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Tidskriftsartikel (refereegranskat)abstract
- Four different case studies were carried out to determine dominating microlitter types from urban environments to the regional Scandinavian seas (eastern North Sea). The sampling was both from sediment near sources (urban runoff and road dust sediment), and further out from coastal sediments. The sea surface layer and subsurface samples was taken in two different gradients, in the Oslo and Roskilde fjords, where also blue mussels were sampled. Best available technologies for sampling each compartment was used and evaluated, and while the water samples was analysed as collected, the sediment and biota samples needed some pretreatment of chemical digestion and/or heavy density liquid floatation or elutriation.In order to develop visual identification as objective as possible, a visual and physical observation scheme was proposed. The visual identification scheme should be complemented with spectroscopic identification to different degrees depending on the size fractions.Spectroscopic identification is still often a quite time-consuming process, meaning that for monitoring purposes it is not currently advisable to aim to identify all particles during monitoring studies. Until fully or partly automated spectroscopic methods are available they are still important tools for verification of representative types of particles in samples above 100 μm.The amount of particles that should be identified to provide adequate compositional information would be dependent on the aim of the study as well as the type and composition of the samples. However, in order to do monitoring and include sample composition in the results a minimum of 100 of the fewest particles should be counted in a sample to achieve 10% standard deviation in terms of counting statistical uncertainty.The field is however rapidly evolving, and automated procedures are already being published. For research purposes and more detailed monitoring and screening studies spectroscopic methods can aside from providing particle identification also give clues on additives and level of degradation.The most common types of microlitter found varied between studies but common trends could be identified between the road tunnel sediment and the urban creek sediment that these contained black particles resembling tire rubber from both visual and tactile tests, and also asphalt, charcoal, oil/tar particles and road marker particles. In the coastal water samples the surface layer was dominated by polystyrene foam particles and polyethylene fragments and films.In the subsurface water samples fibres, films and fragments of plastic was most common. In both the Gothenburg urban creek sediment and Oslo fjord surface water samples particles that could be related to artificial sports turf (polyethylene green grass and clear cut, tire granulate) was observed. The microlitter in mussels was dominated by fibres. The approach of using gradient studies, and include both near source sampling as well as recipient gradient sampling, was concluded to be very suitable to determine sources and fate.
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| 9. |
- Hassellöv, Martin, 1970, et al.
(författare)
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Progress towards monitoring of microlitter in Scandinavian marine environments: State of knowledge and challenges
- 2018
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Rapport (övrigt vetenskapligt/konstnärligt)abstract
- Microlitter consists of minute particles of anthropogenic or processed natural material. The project brings together research groups to conduct specific case studies in gradients from near urban sources such as the traffic environment and cities to the coastal water and sediments in order to study the relative occurrence of specific sources and their environmental dispersion and distribution. The conclusion were first that in sediments from the road environment (tunnel runoff water), tire particles, asphalt and road markings could be identified, and in the urban creek sediments many black particles including elastomers, charcoal-like and oil and soot where in high abundance and decreased rapidly out in the recipient. The results emphasize the role of the cities as hotspot source functions for microlitter in the coastal environment and also where mitigating measures could be directed.
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| 10. |
- Kijewski, Tomasz, et al.
(författare)
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Random forest assessment of correlation between environmental factors and genetic differentiation of populations : Case of marine mussels Mytilus
- 2019
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Ingår i: Oceanologia. - : Elsevier BV. - 0078-3234. ; 61:1, s. 131-142
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Tidskriftsartikel (refereegranskat)abstract
- The novel machine learning technique Random Forest (RF) was used to test if the genetic differentiation of populations of marine species may be related to any of the key environmental variables known to shape species distributions. The study was performed in North and Baltic Sea characterized by strong gradients of environmental factors and almost continuous distributions of Mytilus mussel populations. Assessment of the species identity was performed using four nuclear DNA markers, and previously published single nucleotide polymorphism (SNP) data. A general pattern of cline variation was observed with increasing Mytilus trossulus share towards the eastern Baltic Sea. Average allele share rose to 61% in Hoga Kusten, Gulf of Bothnia. All Baltic Sea samples revealed a strong introgression of Mytilus edulis and a limited introgression of M. trossulus through the Danish Straits. The studied environmental variables described 67 and 68% of the variability in the allele frequencies of M. edulis and M. trossulus. Salinity defined over 50% of the variability in the gene frequencies of the studied Mytilus spp. populations. Changes along this environmental gradient were not gradual but instead a significant shift from gene dominance was found at a salinity of 12 PSU. Water temperature and the trophic status of the sea area had only moderate association with the gene frequencies. The obtained results showed that the novel machine learning technique can be successfully used for finding correlations between genetic differentiation of populations and environmental variables and for defining the functional form of these linkages.
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