| 1. |
- Klionsky, Daniel J., et al.
(författare)
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Guidelines for the use and interpretation of assays for monitoring autophagy
- 2012
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Ingår i: Autophagy. - : Informa UK Limited. - 1554-8635 .- 1554-8627. ; 8:4, s. 445-544
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Forskningsöversikt (refereegranskat)abstract
- In 2008 we published the first set of guidelines for standardizing research in autophagy. Since then, research on this topic has continued to accelerate, and many new scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Accordingly, it is important to update these guidelines for monitoring autophagy in different organisms. Various reviews have described the range of assays that have been used for this purpose. Nevertheless, there continues to be confusion regarding acceptable methods to measure autophagy, especially in multicellular eukaryotes. A key point that needs to be emphasized is that there is a difference between measurements that monitor the numbers or volume of autophagic elements (e.g., autophagosomes or autolysosomes) at any stage of the autophagic process vs. those that measure flux through the autophagy pathway (i.e., the complete process); thus, a block in macroautophagy that results in autophagosome accumulation needs to be differentiated from stimuli that result in increased autophagic activity, defined as increased autophagy induction coupled with increased delivery to, and degradation within, lysosomes (in most higher eukaryotes and some protists such as Dictyostelium) or the vacuole (in plants and fungi). In other words, it is especially important that investigators new to the field understand that the appearance of more autophagosomes does not necessarily equate with more autophagy. In fact, in many cases, autophagosomes accumulate because of a block in trafficking to lysosomes without a concomitant change in autophagosome biogenesis, whereas an increase in autolysosomes may reflect a reduction in degradative activity. Here, we present a set of guidelines for the selection and interpretation of methods for use by investigators who aim to examine macroautophagy and related processes, as well as for reviewers who need to provide realistic and reasonable critiques of papers that are focused on these processes. These guidelines are not meant to be a formulaic set of rules, because the appropriate assays depend in part on the question being asked and the system being used. In addition, we emphasize that no individual assay is guaranteed to be the most appropriate one in every situation, and we strongly recommend the use of multiple assays to monitor autophagy. In these guidelines, we consider these various methods of assessing autophagy and what information can, or cannot, be obtained from them. Finally, by discussing the merits and limits of particular autophagy assays, we hope to encourage technical innovation in the field.
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| 2. |
- Centurioni, Luca R., et al.
(författare)
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Global in situ Observations of Essential Climate and Ocean Variables at the Air-Sea Interface
- 2019
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Ingår i: Frontiers in Marine Science. - : Frontiers Media SA. - 2296-7745. ; 6
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Forskningsöversikt (refereegranskat)abstract
- The air-sea interface is a key gateway in the Earth system. It is where the atmosphere sets the ocean in motion, climate/weather-relevant air-sea processes occur, and pollutants (i.e., plastic, anthropogenic carbon dioxide, radioactive/chemical waste) enter the sea. Hence, accurate estimates and forecasts of physical and biogeochemical processes at this interface are critical for sustainable blue economy planning, growth, and disaster mitigation. Such estimates and forecasts rely on accurate and integrated in situ and satellite surface observations. High-impact uses of ocean surface observations of essential ocean/climate variables (EOVs/ECVs) include (1) assimilation into/validation of weather, ocean, and climate forecast models to improve their skill, impact, and value; (2) ocean physics studies (i.e., heat, momentum, freshwater, and biogeochemical air-sea fluxes) to further our understanding and parameterization of air-sea processes; and (3) calibration and validation of satellite ocean products (i.e., currents, temperature, salinity, sea level, ocean color, wind, and waves). We review strengths and limitations, impacts, and sustainability of in situ ocean surface observations of several ECVs and EOVs. We draw a 10-year vision of the global ocean surface observing network for improved synergy and integration with other observing systems (e.g., satellites), for modeling/forecast efforts, and for a better ocean observing governance. The context is both the applications listed above and the guidelines of frameworks such as the Global Ocean Observing System (GOOS) and Global Climate Observing System (GCOS) (both co-sponsoredby the Intergovernmental Oceanographic Commission of UNESCO, IOC-UNESCO; the World Meteorological Organization, WMO; the United Nations Environment Programme, UNEP; and the International Science Council, ISC). Networks of multiparametric platforms, such as the global drifter array, offer opportunities for new and improved in situ observations. Advances in sensor technology (e.g., low-cost wave sensors), high-throughput communications, evolving cyberinfrastructures, and data information systems with potential to improve the scope, efficiency, integration, and sustainability of the ocean surface observing system are explored.
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| 3. |
- Dong, Bin, et al.
(författare)
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Is 4-nitrobenzenethiol converted to p,p '-dimercaptoazobenzene or 4-aminothiophenol by surface photochemistry reaction?
- 2011
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Ingår i: Journal of Raman Spectroscopy. - : Wiley. - 1097-4555 .- 0377-0486. ; 42:6, s. 1205-1206
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Tidskriftsartikel (refereegranskat)abstract
- For the first time, the experimental and theoretical evidence for the conversion of 4-nitrobenzenethiol (4-NBT) to p,p'-dimercaptoazobenzene (DMAB) in Ag and Cu sols by surface photochemistry reaction is obtained with surface-enhanced Raman scattering (SERS) spectroscopy. The SERS spectrum of 4-NBT in Cu sol is identical to that of DMAB produced from 4-aminothiophenol in Ag sol as reported in recent literature, thereby providing direct spectral evidence. Copyright (C) 2011 John Wiley & Sons, Ltd.
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| 4. |
- Feng, Chi, et al.
(författare)
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Hygric properties of porous building materials (VI) : A round robin campaign
- 2020
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Ingår i: Building and Environment. - : Elsevier BV. - 0360-1323. ; 185
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Tidskriftsartikel (refereegranskat)abstract
- Hygric properties of porous building materials are important for hygrothermal analysis. Their experimental determination is however not always reliable, shown by the discrepant results from different laboratories on the same materials. In this study, a recent round robin campaign initiated by KU Leuven (Belgium) and participated in by eight institutes from different countries is reported. Ceramic brick was selected as the target material. The bulk density and open porosity from vacuum saturation tests, the capillary absorption coefficient and capillary moisture content from capillary absorption tests, and the vapor permeability from cup tests were measured. Results were analyzed statistically and compared with a previous round robin project, EC HAMSTAD. The reproducibility errors for determining the capillary absorption coefficient were noticeably reduced when compared with the EC HAMSTAD project, and the different laboratories in the present study obtained similar results from vacuum saturation tests and capillary absorption tests without a common protocol. For cup tests, large inter-laboratory discrepancies still exist. However, with a stringent common protocol different laboratories achieved consistent results. For all properties a common protocol did not change the average results of all laboratories.
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| 5. |
- Li, Xueying, et al.
(författare)
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Assessing the effects of time interpolation of ndvi composites on phenology trend estimation
- 2021
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Ingår i: Remote Sensing. - : MDPI AG. - 2072-4292. ; 13:24
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Tidskriftsartikel (refereegranskat)abstract
- The accurate evaluation of shifts in vegetation phenology is essential for understanding of vegetation responses to climate change. Remote-sensing vegetation index (VI) products with multi-day scales have been widely used for phenology trend estimation. VI composites should be interpolated into a daily scale for extracting phenological metrics, which may not fully capture daily vegetation growth, and how this process affects phenology trend estimation remains unclear. In this study, we chose 120 sites over four vegetation types in the mid-high latitudes of the northern hemisphere, and then a Moderate Resolution Imaging Spectroradiometer (MODIS) MCD43A4 daily surface reflectance data was used to generate a daily normalized difference vegetation index (NDVI) dataset in addition to an 8-day and a 16-day NDVI composite datasets from 2001 to 2019. Five different time interpolation methods (piecewise logistic function, asymmetric Gaussian function, polynomial curve function, linear interpolation, and spline interpolation) and three phenology extraction methods were applied to extract data from the start of the growing season and the end of the growing season. We compared the trends estimated from daily NDVI data with those from NDVI composites among (1) different interpolation methods; (2) different vegetation types; and (3) different combinations of time interpolation methods and phenology extraction methods. We also analyzed the differences between the trends estimated from the 8-day and 16-day composite datasets. Our results indicated that none of the interpolation methods had significant effects on trend estimation over all sites, but the discrepancies caused by time interpolation could not be ignored. Among vegetation types with apparent seasonal changes such as deciduous broadleaf forest, time interpolation had significant effects on phenology trend estimation but almost had no significant effects among vegetation types with weak seasonal changes such as evergreen needleleaf forests. In addition, trends that were estimated based on the same interpolation method but different extraction methods were not consistent in showing significant (insignificant) differences, implying that the selection of extraction methods also affected trend estimation. Compared with other vegetation types, there were generally fewer discrepancies between trends estimated from the 8-day and 16-day dataset in evergreen needleleaf forest and open shrubland, which indicated that the dataset with a lower temporal resolution (16-day) can be applied. These findings could be conducive for analyzing the uncertainties of monitoring vegetation phenology changes.
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| 6. |
- Sun, Mengtao, et al.
(författare)
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The pH-Controlled Plasmon-Assisted Surface Photocatalysis Reaction of 4-Aminothiophenol to p,p '-Dimercaptoazobenzene on Au, Ag, and Cu Colloids
- 2011
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Ingår i: Journal of Physical Chemistry C. - : American Chemical Society (ACS). - 1932-7447 .- 1932-7455. ; 115:19, s. 9629-9636
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Tidskriftsartikel (refereegranskat)abstract
- In this paper, we report experimentally and theoretically a surface photocatalysis reaction of 4-aminothiophenol (PATP) to p,p'-dimercaptoazobenzene (DMAB) on Au, Ag, and Cu colloids. Surface enhanced Raman scattering (SEAS) spectra of PATP on Au and Cu colloids are significantly different from the normal Raman spectrum of PATP powder. Quantum chemical calculations reveal that PATP on Au and Cu colloids is converted to DMAB by a surface photocatalysis reaction, and all the strongly enhanced Raman peaks are the symmetric Ag vibrational mode by surface plasmon. The pH value effects on surface photocatalysis reaction were also investigated experimentally. It is found that plasmon-assisted surface photocatalysis reaction can be efficiently controlled by different pH values. The possibility of protonation of PATP adsorbed on Au and Ag nanoparticles at pH 3 is investigated theoretically. The molecular mechanism is proposed for controlling surface photocatalysis reaction by pH values.
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| 7. |
- Sun, Yong, et al.
(författare)
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Decomposition of physical processes controlling EASM precipitation changes during the mid-Piacenzian : new insights into data–model integration
- 2024
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Ingår i: npj Climate and Atmospheric Science. - 2397-3722. ; 7
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Tidskriftsartikel (refereegranskat)abstract
- The mid-Piacenzian warm period (MPWP, ~3.264–3.025 Ma) has gained widespread interest due to its partial analogy with future climate. However, quantitative data–model comparison of East Asian Summer Monsoon (EASM) precipitation during the MPWP is relatively rare, especially due to problems in decoding the imprint of physical processes to climate signals in the records. In this study, pollen-based precipitation records are reconstructed and compared to the multi-model ensemble mean of the Pliocene Model Intercomparison Project Phase 2 (PlioMIP2). We find spatially consistent precipitation increase in most simulations but a spatially divergent change in MPWP records. We reconcile proxy data and simulation by decomposing physical processes that control precipitation. Our results 1) reveal thermodynamic control of an overall enhancement of EASM precipitation and 2) highlight a distinct control of thermodynamic and dynamical processes on increases of tropical and subtropical EASM precipitation, reflecting the two pathways of water vapor supply that enhance EASM precipitation, respectively.
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| 8. |
- Tian, Yishui, et al.
(författare)
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Estimation of un-used land potential for biofuels development in (the) People's Republic of China
- 2009
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Ingår i: Applied Energy. - : Elsevier BV. - 0306-2619 .- 1872-9118. ; 86, s. S77-S85
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Tidskriftsartikel (refereegranskat)abstract
- This paper presents the current status of biofuel development and estimates the potential of un-used land for biofuel development. The potential of crops including cassava, sweet potato, sweet sorghum, sugarcane, sugar beet and Jerusalem artichoke were assessed and discussed for different regions considering the geographical conditions and features of agricultural production. If reserved land resources are explored together with substitute planting implemented and unit area yield improved, potential production of bio-ethanol fuel will be 22 million tons in 2020. The study also recommends the use of winter idle lands for rapeseed plantation for biofuel production. The potential for production of biodiesel by rapeseed and cottonseed can reach to 3.59 million tons.
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| 9. |
- Xia, Lixin, et al.
(författare)
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Selective reduction of nitroaromatic compounds on silver nanoparticles by visible light
- 2012
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Ingår i: Journal of Raman Spectroscopy. - : Wiley. - 1097-4555 .- 0377-0486. ; 43:8, s. 1024-1028
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Tidskriftsartikel (refereegranskat)abstract
- For the first time, we report experimentally and theoretically that nitroaromatic compounds, 2,4-dinitrobenzenethiol and 4-chloro-2-nitrobenzenethiol, on silver sols can be selectively reduced to 2-amino-4-nitrobenzenethiol and 2-amino-4-chlorobenzenethiol simply by irradiating with a visible light in ambient conditions, and the selective photoreduction is a very facile process. The results of quantum chemical calculations are in good agreement with our experimental data. Copyright (c) 2012 John Wiley & Sons, Ltd.
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| 10. |
- Xia, Lixin, et al.
(författare)
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Visualized method of chemical enhancement mechanism on SERS and TERS
- 2014
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Ingår i: Journal of Raman Spectroscopy. - : Wiley. - 1097-4555 .- 0377-0486. ; 45:7, s. 533-540
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Forskningsöversikt (refereegranskat)abstract
- We review our developed visualization method of charge transfer (CT) for chemical enhancement mechanism on surface-enhanced Raman scattering (SERS) and tip-enhanced Raman spectroscopy (TERS). Firstly, we describe our visualization method of charge difference density, which provides direct visual evidence for photoinduced CT. And then, using the visualization method of CT, we interpreted the mechanism of SERS and TERS. Photoinduced charge transfer in the processes of SERS and TERS can be clearly seen. Our visualization method provides a visual and easy understanding way for the mechanism of SERS and TERS. Copyright (C) 2014 John Wiley & Sons, Ltd.
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