| 1. |
- Große Ruse, Mareile, et al.
(författare)
-
Automated analysis of song structure in complex birdsongs
- 2016
-
Ingår i: Animal Behaviour. - : Elsevier BV. - 0003-3472. ; 112, s. 39-51
-
Tidskriftsartikel (refereegranskat)abstract
- Understanding communication and signalling has long been strived for in studies of animal behaviour. Many songbirds have a variable and complex song, closely connected to territory defence and reproductive success. However, the quantification of such variable song is challenging. In this paper, we present a novel, automated method for detection and classification of syllables in birdsong. The method provides a tool for pairwise comparison of syllables with the aim of grouping them in terms of their similarity. This allows analyses such as (1) determining repertoire size within an individual, (2) comparing song similarity between individuals within as well as between populations of a species and (3) comparing songs of different species (e.g. for species recognition). Our method is based on a particular feature representation of song units (syllables) which ensures invariance to shifts in time, frequency and amplitude. Using a single song from a great reed warbler, Acrocephalus arundinaceus, recorded in the wild, the proposed algorithm is evaluated by means of comparison to manual auditory and visual (spectrogram) song investigation by a human expert and to standard song analysis methods. Our birdsong analysis approach conforms well to manual classification and, moreover, outperforms the hitherto widely used methods based on mel-frequency cepstral coefficients and spectrogram cross-correlation. Thus, our algorithm is a methodological step forward for analyses of song (syllable) repertoires of birds singing with high complexity.
|
|
| 2. |
- Hagen, Ingerid J., et al.
(författare)
-
A genome-wide linkage map for the house sparrow (Passer domesticus) provides insights into the evolutionary history of the avian genome
- 2020
-
Ingår i: Molecular Ecology Resources. - : Wiley. - 1755-098X .- 1755-0998. ; 20:2, s. 544-559
-
Tidskriftsartikel (refereegranskat)abstract
- The house sparrow is an important model species for studying physiological, ecological and evolutionary processes in wild populations. Here, we present a medium density, genome wide linkage map for house sparrow (Passer domesticus) that has aided the assembly of the house sparrow reference genome, and that will provide an important resource for ongoing mapping of genes controlling important traits in the ecology and evolution of this species. Using a custom house sparrow 10 K iSelect Illumina SNP chip we have assigned 6,498 SNPs to 29 autosomal linkage groups, based on a mean of 430 informative meioses per SNP. The map was constructed by combining the information from linkage with that of the physical position of SNPs within scaffold sequences in an iterative process. Averaged between the sexes; the linkage map had a total length of 2,004 cM, with a longer map for females (2,240 cM) than males (1,801 cM). Additionally, recombination rates also varied along the chromosomes. Comparison of the linkage map to the reference genomes of zebra finch, collared flycatcher and chicken, showed a chromosome fusion of the two avian chromosomes 8 and 4A in house sparrow. Lastly, information from the linkage map was utilized to conduct analysis of linkage disequilibrium (LD) in eight populations with different effective population sizes (Ne) in order to quantify the background level LD. Together, these results aid the design of future association studies, facilitate the development of new genomic tools and support the body of research that describes the evolution of the avian genome.
|
|
| 3. |
- Hansson, Bengt, et al.
(författare)
-
Contrasting results from GWAS and QTL mapping on wing length in great reed warblers
- 2018
-
Ingår i: Molecular Ecology Resources. - : Wiley. - 1755-098X .- 1755-0998. ; 18:4, s. 867-876
-
Tidskriftsartikel (refereegranskat)abstract
- A major goal in evolutionary biology is to understand the genetic basis of adaptive traits. In migratory birds, wing morphology is such a trait. Our previous work on the great reed warbler (Acrocephalus arundinaceus) shows that wing length is highly heritable and under sexually antagonistic selection. Moreover, a quantitative trait locus (QTL) mapping analysis detected a pronounced QTL for wing length on chromosome 2, suggesting that wing morphology is partly controlled by genes with large effects. Here, we re-evaluate the genetic basis of wing length in great reed warblers using a genomewide association study (GWAS) approach based on restriction site-associated DNA sequencing (RADseq) data. We use GWAS models that account for relatedness between individuals and include covariates (sex, age and tarsus length). The resulting association landscape was flat with no peaks on chromosome 2 or elsewhere, which is in line with expectations for polygenic traits. Analysis of the distribution of p-values did not reveal biases, and the inflation factor was low. Effect sizes were however not uniformly distributed on some chromosomes, and the Z chromosome had weaker associations than autosomes. The level of linkage disequilibrium (LD) in the population decayed to background levels within c. 1 kbp. There could be several reasons to why our QTL study and GWAS gave contrasting results including differences in how associations are modelled (cosegregation in pedigree vs. LD associations), how covariates are accounted for in the models, type of marker used (multi- vs. biallelic), difference in power or a combination of these. Our study highlights that the genetic architecture even of highly heritable traits is difficult to characterize in wild populations.
|
|
| 4. |
- Hansson, Bengt, et al.
(författare)
-
Hybridization but no evidence for backcrossing and introgression in a sympatric population of great reed warblers and clamorous reed warblers.
- 2012
-
Ingår i: PLoS ONE. - : Public Library of Science (PLoS). - 1932-6203. ; 7:2
-
Tidskriftsartikel (refereegranskat)abstract
- Hybridization is observed frequently in birds, but often it is not known whether the hybrids are fertile and if backcrossing occurs. The breeding ranges of the great reed warbler (Acrocephalus arundinaceus) and the clamorous reed warbler (A. stentoreus) overlap in southern Kazakhstan and a previous study has documented hybridization in a sympatric population. In the present study, we first present a large set of novel microsatellite loci isolated and characterised in great reed warblers. Secondly, we evaluate whether hybridization in the sympatric breeding population has been followed by backcrossing and introgression.We isolated 181 unique microsatellite loci in great reed warblers. Of 41 loci evaluated, 40 amplified and 30 were polymorphic. Bayesian clustering analyses based on genotype data from 23 autosomal loci recognised two well-defined genetic clusters corresponding to the two species. Individuals clustered to a very high extent to either of these clusters (admixture proportions ≥0.984) with the exception of four previously suggested arundinaceus-stentoreus hybrid birds that showed mixed ancestry (admixture proportions 0.495-0.619). Analyses of simulated hybrids and backcrossed individuals showed that the sampled birds do not correspond to first-fourth-generation backcrosses, and that fifth or higher generation backcrosses to a high extent resemble 'pure' birds at this set of markers.We conclude that these novel microsatellite loci provide a useful molecular resource for Acrocephalus warblers. The time to reach reproductive isolation is believed to be very long in birds, approximately 5 Myrs, and with an estimated divergence time of 2 Myrs between these warblers, some backcrossing and introgression could have been expected. However, there was no evidence for backcrossing and introgression suggesting that hybrids are either infertile or their progeny inviable. Very low levels of introgression cannot be excluded, which still may be an important factor as a source of new genetic variation.
|
|
| 5. |
- Hansson, Bengt, et al.
(författare)
-
Postglacial colonisation patterns and the role of isolation and expansion in driving diversification in a passerine bird.
- 2008
-
Ingår i: PLoS ONE. - : Public Library of Science (PLoS). - 1932-6203. ; 3:7
-
Tidskriftsartikel (refereegranskat)abstract
- Pleistocene glacial cycles play a major role in diversification and speciation, although the relative importance of isolation and expansion in driving diversification remains debated. We analysed mitochondrial DNA sequence data from 15 great reed warbler (Acrocephalus arundinaceus) populations distributed over the vast Eurasian breeding range of the species, and revealed unexpected postglacial expansion patterns from two glacial refugia. There were 58 different haplotypes forming two major clades, A and B. Clade A dominated in Western Europe with declining frequencies towards Eastern Europe and the Middle East, but showed a surprising increase in frequency in Western and Central Asia. Clade B dominated in the Middle East, with declining frequencies towards north in Central and Eastern Europe and was absent from Western Europe and Central Asia. A parsimonious explanation for these patterns is independent postglacial expansions from two isolated refugia, and mismatch distribution analyses confirmed this suggestion. Gene flow analyses showed that clade A colonised both Europe and Asia from a refugium in Europe, and that clade B expanded much later and colonised parts of Europe from a refugium in the Middle East. Great reed warblers in the eastern parts of the range have slightly paler plumage than western birds (sometimes treated as separate subspecies; A. a. zarudnyi and A. a. arundinaceus, respectively) and our results suggest that the plumage diversification took place during the easterly expansion of clade A. This supports the postglacial expansion hypothesis proposing that postglacial expansions drive diversification in comparatively short time periods. However, there is no indication of any (strong) reproductive isolation between clades and our data show that the refugia populations became separated during the last glaciation. This is in line with the Pleistocene speciation hypothesis invoking that much longer periods of time in isolation are needed for speciation to occur.
|
|
| 6. |
- Hasselquist, Dennis, et al.
(författare)
-
Individual consistency of long-distance migration in a songbird: significant repeatability of autumn route, stopovers and wintering sites but not in timing of migration
- 2017
-
Ingår i: Journal of Avian Biology. - : Wiley. - 0908-8857. ; 48:1, s. 91-102
-
Tidskriftsartikel (refereegranskat)abstract
- Through new tracking techniques, data on timing and routes of migration in long-distance migrant birds are accumulating. However, studies of the consistency of migration of the same individuals between years are still rare in small-sized passerine birds. This type of information is important to understand decisions and migration abilities at the individual level, but also for life history theory, for understanding carry over effects between different annual cycle stages and for conservation. We analysed individual repeatability of migration between years in great reed warblers Acrocephalus arundinaceus; a medium-sized European songbird migrating to sub-Saharan Africa. In seven males, with geolocator data from 2–4 yr per bird, we found low to moderate (non significant) repeatability in timing of migration parameters (R ≤ 0.41), but high (and significant) repeatability for most spatial parameters, i.e. autumn route (R = 0.64) and stopover sites (R = 0.59–0.87) in Europe, and wintering sites (R = 0.77–0.99) in sub-Saharan Africa. This pattern of high spatial but low temporal within-individual repeatability of migration between years contrasts other tracking studies of migrating birds that generally have found consistency in timing but flexibility in routes. High spatial consistency of migration in the great reed warbler may be due to it being a specialist in wetlands, an unevenly distributed habitat, favouring a strategy of recurrence at previously visited sites. Low temporal repeatability may be caused by large between-year variation in carry-over effects from the breeding season, high flexibility in decision rules during migration or high sensitivity to environmental factors (weather, wind) during migration.
|
|
| 7. |
- Hämäläinen, Anni, et al.
(författare)
-
Evolution of sex-specific pace-of-life syndromes : causes and consequences
- 2018
-
Ingår i: Behavioral Ecology and Sociobiology. - : Springer Science and Business Media LLC. - 0340-5443 .- 1432-0762. ; 72:3
-
Forskningsöversikt (refereegranskat)abstract
- Males and females commonly differ in their life history optima and, consequently, in the optimal expression of life history, behavioral and physiological traits involved in pace-of-life syndromes (POLS). Sex differences in mean trait expression typically result if males and females exhibit different fitness optima along the same pace-of-life continuum, but the syndrome structure may also differ for the sexes. Due to sex-specific selective pressures imposed by reproductive roles and breeding strategies, the sexes may come to differ in the strength of correlation among traits, or different traits may covary in males and females. Ignorance of these selective forces operating between and within the sexes may lead to flawed conclusions about POLS manifestation in the species, and stand in the way of understanding the evolution, maintenance, and variability of POLS. We outline ways in which natural and sexual selection influence sex-specific trait evolution, and describe potential ultimate mechanisms underlying sex-specific POLS. We make predictions on how reproductive roles and the underlying sexual conflict lead to sex-specific trait covariances. These predictions lead us to conclude that sexual dimorphism in POLS is expected to be highly prevalent, allow us to assess possible consequences for POLS evolution, and provide guidelines for future studies.
|
|
| 8. |
- Immonen, Elina, et al.
(författare)
-
Evolution of sex-specific pace-of-life syndromes : genetic architecture and physiological mechanisms
- 2018
-
Ingår i: Behavioral Ecology and Sociobiology. - : Springer Science and Business Media LLC. - 0340-5443 .- 1432-0762. ; 72:3
-
Forskningsöversikt (refereegranskat)abstract
- Sex differences in life history, physiology, and behavior are nearly ubiquitous across taxa, owing to sex-specific selection that arises from different reproductive strategies of the sexes. The pace-of-life syndrome (POLS) hypothesis predicts that most variation in such traits among individuals, populations, and species falls along a slow-fast pace-of-life continuum. As a result of their different reproductive roles and environment, the sexes also commonly differ in pace-of-life, with important consequences for the evolution of POLS. Here, we outline mechanisms for how males and females can evolve differences in POLS traits and in how such traits can covary differently despite constraints resulting from a shared genome. We review the current knowledge of the genetic basis of POLS traits and suggest candidate genes and pathways for future studies. Pleiotropic effects may govern many of the genetic correlations, but little is still known about the mechanisms involved in trade-offs between current and future reproduction and their integration with behavioral variation. We highlight the importance of metabolic and hormonal pathways in mediating sex differences in POLS traits; however, there is still a shortage of studies that test for sex specificity in molecular effects and their evolutionary causes. Considering whether and how sexual dimorphism evolves in POLS traits provides a more holistic framework to understand how behavioral variation is integrated with life histories and physiology, and we call for studies that focus on examining the sex-specific genetic architecture of this integration.
|
|
| 9. |
- Koleček, Jaroslav, et al.
(författare)
-
Cross-continental migratory connectivity and spatiotemporal migratory patterns in the great reed warbler
- 2016
-
Ingår i: Journal of Avian Biology. - : Wiley. - 0908-8857 .- 1600-048X. ; 47:6, s. 756-767
-
Tidskriftsartikel (refereegranskat)abstract
- Migratory connectivity describes to which degree different breeding populations have distinct (non-overlapping) non-breeding sites. Uncovering the level of migratory connectivity is crucial for effective conservation actions and for understanding of the evolution of local adaptations and migratory routes. Here we investigate migration patterns in a passerine bird, the great reed warbler Acrocephalus arundinaceus, over its wide Western Palearctic breeding range using geolocators from Spain, Sweden, Czech Republic, Bulgaria and Turkey. We found moderate migratory connectivity: a highly significant spatial structure in the connections between breeding and sub-Saharan non-breeding grounds, but at the same time a partial overlap between individual populations, particularly along the Gulf of Guinea where the majority of birds from the Spanish, Swedish and Czech populations spent their non-breeding period. The post-breeding migration routes were similar in direction and rather parallel for the five populations. Birds from Turkey showed the most distinctive migratory routes and sub-Saharan non-breeding range, with a post-breeding migration to east Africa and, together with birds from Bulgaria, a previously unknown pre-breeding migration over the Arabian Peninsula indicating counter-clockwise loop migration. The distances between breeding and sub-Saharan non-breeding sites, as well as between first and final sub-Saharan non-breeding sites, differed among populations. However, the total speed of migration did not differ significantly between populations; neither during post-breeding migration in autumn, nor pre-breeding migration in spring. There was also no significant relationship between the total speed of migration and distance between breeding and non-breeding sites (neither post- nor pre-breeding) and, surprisingly, the total speed of migration generally did not differ significantly between post-breeding and pre-breeding migration. Future challenges include understanding whether non-breeding environmental conditions may have influenced the differences in migratory patterns that we observed between populations, and to which extent non-breeding habitat fluctuations and loss may affect population sizes of migrants.
|
|
| 10. |
- Lemke, Hilger, et al.
(författare)
-
Annual cycle and migration strategies of a trans-saharan migratory songbird: a geolocator study in the great reed warbler.
- 2013
-
Ingår i: PLoS ONE. - : Public Library of Science (PLoS). - 1932-6203. ; 8:10
-
Tidskriftsartikel (refereegranskat)abstract
- Recent technological advancements now allow us to obtain geographical position data for a wide range of animal movements. Here we used light-level geolocators to study the annual migration cycle in great reed warblers (Acrocephalus arundinaceus), a passerine bird breeding in Eurasia and wintering in sub-Saharan Africa. We were specifically interested in seasonal strategies in routes and schedules of migration. We found that the great reed warblers (all males, no females were included) migrated from the Swedish breeding site in early August. After spending up to three weeks at scattered stopover sites in central to south-eastern Europe, they resumed migration and crossed the Mediterranean Sea and Sahara Desert without lengthy stopovers. They then spread out over a large overwintering area and each bird utilised two (or even three) main wintering sites that were spatially separated by a distinct mid-winter movement. Spring migration initiation date differed widely between individuals (1-27 April). Several males took a more westerly route over the Sahara in spring than in autumn, and in general there were fewer long-distance travels and more frequent shorter stopovers, including one in northern Africa, in spring. The shorter stopovers made spring migration on average faster than autumn migration. There was a strong correlation between the spring departure dates from wintering sites and the arrival dates at the breeding ground. All males had a high migration speed in spring despite large variation in departure dates, indicating a time-minimization strategy to achieve an early arrival at the breeding site; the latter being decisive for high reproductive success in great reed warblers. Our results have important implications for the understanding of long-distance migrants' ability to predict conditions at distant breeding sites and adapt to rapid environmental change.
|
|
