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- Halvarsson, Peter
(författare)
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Host-Parasite Interactions in Natural Populations
- 2016
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Doktorsavhandling (övrigt vetenskapligt/konstnärligt)abstract
- Parasitism is one of the most common ways of living and it has arised in many taxa. Parasites feed and live inside or on their hosts resulting in both long and short term consequences for the host. This thesis is exploring the phenotypic and genotypic effects of animals living with parasitic infections. I have been studying three different parasite groups and their associated host species: the great snipe, a lekking freshwater wader bird that migrates between Africa and Northern Europe; the tree sparrow, a stationary passerine found close to human settlements and lastly the water vole, a large rodent living in riparian habitats.Avian malaria is one of the most commonly studied parasites affecting birds. Atoxoplasma, an intestinal protozoan parasite is less studied but is thought to be endemic in free-ranging birds. Given the freshwater habitat great snipes inhabit, a prevalence of 30% avian malaria infections is not high and that the prevalence fluctuated among years. Sequencing of the avian malaria cytochrome b gene revealed that parasites are similar to avian malaria parasites found in African birds suggesting that they were infected on the wintering grounds in Africa. Tree sparrows had few malaria infected individuals, a result that is consistent with other studies of stationary birds at high latitudes. Atoxoplasma infections were common in tree sparrows and capture-recapture analyses show decreased survival in infected compared to uninfected birds and signs of lower mating success among infected.Genetic analyses comparing the transcriptome between mated and unmated great snipe males revealed that the genotype is important for mating success and health status for some of the expressed genes. That variations in some of these genes are involved in maintaining a good health status and mating success supports handicap models for sexual selection in this lek mating system.The major histocompatibility complex (MHC) is a part of the immune system and it contains genes involved in immune response. In water voles, a number of new MHC alleles were identified. Based on their in silico phenotype they were grouped into supertypes to facilitate studies on how helminth infections affect the MHC diversity in the water voles. Some of these MHC supertypes provided resistance to one helminth species, but the same supertype caused the opposite effect for other helminth parasites. Overall, parasites are a driving force for maintaining genetic diversity and parasite infections lowers survival rate, which would lead to a lower lifetime breeding success.
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| 2. |
- Castroviejo-Fisher, Santiago, 1979-
(författare)
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Species Limits, and Evolutionary History of Glassfrogs
- 2009
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Doktorsavhandling (övrigt vetenskapligt/konstnärligt)abstract
- Recognizing the mechanisms of speciation and the limits of species is essential to understand the origin of biodiversity and how to conserve it. The general aims of my investigations during my doctoral studies were two-fold: to study evolutionary patterns and processes, and to provide specific and superspecific taxonomic classifications that try to reflect evolutionary history. I have focused my research on anurans in their biodiversity hotspot, the American Tropics. I have used morphological, behavioral (mating calls), and genetic (DNA sequences) characters to study species boundaries between frogs of the genus Pristimantis and the family Centrolenidae (glassfrogs). The results show that the exclusive use of single lines of evidence or the application of arbitrary thresholds impair and bias our ability to recognize new species and limit the possibility to understand evolutionary processes. Only an integrative approach combining every source of evidence provides the necessary feedback to discover all species and test their identity by comparing independent sets of data. This approach further allows identifying those species that probably represent stable comparative units (well supported species hypotheses) and to flag taxa that require further assessment. Phylogenetic reconstructions based on seven nuclear and mitochondrial genes for about 100 species of glassfrogs revealed that previous hypotheses of relationships were mislead by rampant convergent evolution at the phenotypic level. None of the previously suggested classifications fit with the reconstructed evolutionary history. Consequently, we proposed a new classification consistent with this phylogeny. I also studied the tempo and mode of diversification among glassfrogs. Based on sequences from ten genes in 87 species, I estimated species divergence times, age-range correlation between sister species, and reconstructed ancestral areas and dispersal/vicariance events. The results revealed a complex model of diversification where geographical isolation seems to be the dominant scenario for speciation and only clades of altitudinal generalists have been able to spread across the Neotropical rainforests.
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| 3. |
- Hasselgren, Malin, 1990-
(författare)
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Dynamics of inbreeding and genetic rescue in a small population
- 2022
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Doktorsavhandling (övrigt vetenskapligt/konstnärligt)abstract
- Isolation at small population size can reduce individual fitness and impede population growth caused by inbreeding and genetic drift (i.e. inbreeding depression). Inbreeding depression can however be circumvented by gene flow from unrelated individuals through masking of recessive deleterious alleles and contribute to population persistence (i.e. genetic rescue). Studying these processes in natural populations across generations and under fluctuating environmental conditions however comes with major challenges. Several gaps in the knowledge thus remain regarding causes and consequences of inbreeding depression and genetic rescue in the wild. Using long term data on life history traits, combined with traditional population genetics and novel genomic techniques, we explored the dynamics of inbreeding and gene flow in the highly fragmented arctic fox (Vulpes lagopus) population in Sweden. This thesis mainly focused on the southernmost subpopulation (Helagsfjällen), previously documented to suffer from inbreeding depression. Construction of a genetically verified pedigree (Chapter I and II) revealed that gene flow from three outbred male foxes released from a captive breeding station in Norway resulted in genetic rescue, expressed as elevated first year survival and breeding success in immigrant first generation offspring (F1; Chapter I). However, the rescue effect likely only lasted for one single generation, as we found no selective advantage in later descendants of immigrants (Chapter II and IV). Whole genome sequencing of a subset of individuals from the same subpopulation showed that some immigrant F2 and F3 individuals were highly inbred despite the recent outbreeding events (Chapter III). Identification of putative deleterious variation within coding regions suggested that the immigrants introduced a large number of strongly deleterious alleles which were absent from the native gene pool (Chapter IV and V). Expression of the deleterious variation introduced may explain the low persistence of genetic rescue. We also found a negative relationship between the amount of homozygous strongly deleterious mutations and individual fitness (Chapter IV) and may be an important cause of inbreeding depression in the Swedish arctic fox. Finally, when replicating the study of genomic consequences of inbreeding and gene flow, by including an additional Swedish subpopulation (Vindelfjällen) located further north, we found contrasting patterns between the two subpopulations. While inbreeding decreased in both Helagsfjällen and Vindelfjällen following immigration, the proportion of deleterious variation increased in Helagsfjällen but not in Vindelfjällen. A potential explanation could be more regular gene flow between northern located subpopulations compared to the more geographically isolated population in Helagsfjällen, which may instead have purged a subset of strongly deleterious variation pre immigration. The results from this thesis highlight the transient nature of genetic rescue and the importance to study fitness and genetic effects of gene flow across several generations, as immigration could have negative consequences that are not manifested initially. Finally, as the effects of gene flow can be highly context dependent, demographic histories and functional genetic variation in both source and target populations should be considered before making translocation decisions for conservation purposes.
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