| 1. |
- Alm, Erik, 1980-, et al.
(författare)
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Automated annotation and quantification of metabolites in (1)H NMR data of biological origin
- 2012
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Ingår i: Analytical and Bioanalytical Chemistry. - : Springer Science and Business Media LLC. - 1618-2642 .- 1618-2650. ; 403:2, s. 443-455
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Tidskriftsartikel (refereegranskat)abstract
- In 1H NMR metabolomic datasets, there are often over a thousand peaks per spectrum, many of which change position drastically between samples. Automatic alignment, annotation, and quantification of all the metabolites of interest in such datasets have not been feasible. In this work we propose a fully automated annotation and quantification procedure which requires annotation of metabolites only in a single spectrum. The reference database built from that single spectrum can be used for any number of 1H NMR datasets with a similar matrix. The procedure is based on the generalized fuzzy Hough transform (GFHT) for alignment and on Principal-components analysis (PCA) for peak selection and quantification. We show that we can establish quantities of 21 metabolites in several 1H NMR datasets and that the procedure is extendable to include any number of metabolites that can be identified in a single spectrum. The procedure speeds up the quantification of previously known metabolites and also returns a table containing the intensities and locations of all the peaks that were found and aligned but not assigned to a known metabolite. This enables both biopattern analysis of known metabolites and data mining for new potential biomarkers among the unknowns.
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| 2. |
- Almqvist, Erik, et al.
(författare)
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Solving the ADAPT Benchmark Problem - A Student Project Study
- 2010
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Konferensbidrag (refereegranskat)abstract
- This paper describes a solution to the Advanced Diagnosis and Prognostics testbed (ADAPT) diagnosis benchmark problem. One main objective was to study and discuss how engineering students, with no diagnosis research background, would solve a challenging diagnosis problem. The study was performed within the framework of a final year project course for control engineering students. A main contribution of the work is the discussion on the development process used by the students. The solution is based on physical models of components and includes common techniques from control theory, like observers and parameter estimators, together with established algorithms for consistency based fault isolation. The system is fully implemented in C++ and evaluated, using the DXC software platform, with good diagnosis performance.
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| 3. |
- Lindgren, Stig-Åke, 1950, et al.
(författare)
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Coverage-dependent frequency for Li-atom vibrations on Cu(111)
- 1996
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Ingår i: Physical Review B. - 2469-9969 .- 2469-9950. ; 54:15, s. 10912 - 10916
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Tidskriftsartikel (refereegranskat)abstract
- Electron-energy-loss spectra recorded for monolayer amounts of Li adsorbed on Cu(111) show a loss peak associated with Li vibrations perpendicular to the substrate. The loss energy shifts from 38 meV at low coverage to 43 meV at 0.3 ML and remains constant for coverages between 0.3 and 0.5 ML. The loss intensity passes a maximum at a Li coverage of 0.15 ML and gradually decreases such that it is difficult to resolve a loss peak at coverages above 0.5 ML. The high loss energy indicates that the adatom resides on the surfaces rather than in substitutional sites. The frequency shift is much too large to be explained by dipole-dipole interactions. The above results are obtained with the evaporation source loaded with the natural Li isotope mixture (92.6% 7Li, 7.4% 6Li). Measurements with 6Li show that the increase of the vibration frequency with increasing coverage is not an isotope effect.
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| 5. |
- Akansel, Serkan, 1983-
(författare)
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Magnetization Dynamics in Ferromagnetic Thin Films : Evaluation of Different Contributions to Damping in Co2FeAl and FeCo Film Structures
- 2018
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Doktorsavhandling (övrigt vetenskapligt/konstnärligt)abstract
- Static and dynamic magnetic properties of Co2FeAl and Fe65Co35 alloys have been investigated. Co2FeAl films were deposited at different temperatures and the deposition parameters were optimized with respect to structural and magnetic properties. As a result, a film with B2 crystalline phase was obtained without any post-annealing process. A lowest magnetic damping parameter of was obtained for the film deposited at 573K. This obtained low value is comparable to the lowest values reported in research literature. After optimizing the deposition parameters of this alloy, different seed layers and capping layers were added adjacent to the Co2FeAl layer and the effect of these layers on the magnetic relaxation was investigated. In addition to adding nonmagnetic layers to Co2FeAl, the dependence of the magnetic damping parameter with respect to the thickness of Co2FeAl was investigated by depositing films with different thicknesses. A temperature dependent study of the magnetic damping parameter was also performed and the measured damping parameters were compared with theoretically calculated intrinsic Gilbert damping parameters. Different extrinsic contributions to the magnetic damping, such as two magnon scattering, spin pumping, eddy-current damping and radiative damping, were identified and subtracted from the experimentally obtained damping parameter. Hence, it was possible to obtain the intrinsic damping parameter, that is called the Gilbert damping parameter.In the second part of the thesis, Fe65Co35 alloys were investigated in terms of static and dynamic magnetic properties. Fe65Co35 films were deposited without and with different seed layers in order to first understand the effect of the seed layer on static magnetic properties of the films, such as the coercivity of the films. Then the films with seed layers yielding the lowest coercivity were investigated in terms of dynamic magnetic properties. Fe65Co35 films with different rhenium dopant concentrations and with ruthenium as the seed and capping layer were also investigated. The purpose of this study was to increase the damping parameter of the films and an increase of about ~230% was obtained by adding the dopant to the structure. This study was performed at different temperatures and after subtraction of the extrinsic contributions to the damping, the experimental values were compared with theoretically calculated values of the Gilbert damping parameter. During the thesis work, magnetic looper and superconducting quantum interference device magnetometers set-ups were used for static magnetic measurements and cavity, broadband in-plane and broadband out-of-plane ferromagnetic resonance set-ups were used for dynamic measurements.
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| 6. |
- Banuazizi, Seyed Amir Hossein
(författare)
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Determining and Optimizing the Current and Magnetic Field Dependence of Spin-Torque and Spin Hall Nano-Oscillators : Toward Next-Generation Nanoelectronic Devices and Systems
- 2018
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Doktorsavhandling (övrigt vetenskapligt/konstnärligt)abstract
- Spin-torque and spin Hall nano-oscillators are nanoscale devices (about 100 nm) capable of producing tunable broadband high-frequency microwave signals ranging from 0.1 GHz to over 65 GHz that several research groups trying to reach up to 200 - 300 GHz. Their development is ongoing for applications in high-frequency nanoelectronic devices and systems, such as mobile phones, wireless networks, base stations, vehicle radars, and even medical applications.This thesis covers a wide range of characterizations of spin-torque and spin Hall nano-oscillator devices that aim to investigate their current and magnetic field dependency, as well as to suggest improvements in these devices to optimize their application in spintronics and magnonics. The work is primarily based on experimental methods for characterizing these devices by building up new measurement systems, but it also includes numerical and micromagnetic simulations.Experimental techniques: In order to characterize the fabricated nanodevices in a detailed and accurate manner through their electrical and microwave responses, new measurement systems capable of full 3D control over the external magnetic fields will be described. In addition, a new method of probing an operational device using magnetic force microscopy (MFM) will be presented.Spin-torque nano-oscillators: We will describe remarkable improvements in the performance of spin-torque nano-oscillators (STNOs) that enhance their integration capability with applications in microwave systems. In nanocontact (NC-)STNOs made from a conventional spin-valve stack, though with thicker bottom electrodes, it is found the auto-oscillations can be excited with higher frequencies at lower threshold currents, and with higher output powers. We also find that this idea is useful for tuning spin-wave resonance and also controlling the thermal budget. Furthermore, a detailed study of magnetic droplet solitons and spin-wave dynamics in NC-STNOs will be described. Finally, we demonstrate ultra-high frequency tunability in low-current STNOs based on perpendicular magnetic tunnel junctions(p-MTJs).Spin Hall nano-oscillators: Characterizations of spin Hall nano-oscillator(SHNO) devices based on different structures and materials with both conventional and novel methods will be described. A detailed study of the current, temperature, and magnetic field profiles of nanogap SHNOs will be presented. In addition, we show the current and magnetic field dependence of nanoconstriction-based SHNOs.Moreover, it is shown that multiple SHNOs can be serially synchronized, thereby increasing their output power and enhancing the usage of these devices in applications such as neuromorphic computing. We show synchronization of multiple nanoconstriction SHNOs in the presence of a low in-plane magnetic field. Finally, there is a demonstration of the results of a novel method for probing an operationalSHNO using MFM.
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| 9. |
- Bärring, Maja, 1988, et al.
(författare)
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Challenges of data acquisition for simulation models of production systems in need of standards
- 2018
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Ingår i: Proceedings - Winter Simulation Conference. - : Institute of Electrical and Electronics Engineers Inc.. - 0891-7736. ; 2018-December, s. 691-702
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Konferensbidrag (refereegranskat)abstract
- In this paper, we analyze the challenges in data acquisition for simulation models of production systems based on two cases from the robotics and aerospace industries. Unlike prior research, we focus not only on the challenges of data acquisition but also on how these challenges affect decisions in production systems. We examine this linkage using the concepts of strategic objectives, decision areas, and internal fit from operations management literature. Empirical findings show that for data acquisition to lead to improved production system performance it is necessary to develop standards. Standards should consider ownership of data by different functions within a manufacturing company, alignment of data to performance measurements, and the connection between data, information, and production decisions. Using these concepts, this paper proposes a set of guidelines that facilitate the standardization of data acquisition for simulation models in production systems. We conclude by discussing the managerial implications of our findings.
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| 10. |
- Carlsson, Daniel, 1982-
(författare)
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Effects of cold and hand-arm vibration on the peripheral neurosensory and vascular system : an occupational perspective
- 2017
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Doktorsavhandling (övrigt vetenskapligt/konstnärligt)abstract
- Background In Swedish working life, exposure to cold and exposure to hand-arm vibration (HAV) are two common health hazards. Health effects of HAV in the neurosensory, vascular and musculoskeletal systems are collectively denoted hand-arm vibration syndrome (HAVS), and have been thoroughly studied. Effects of cold exposure in terms of effects on the peripheral neurosensory and vascular system are on the contrary limited, especially in an occupational setting. Effects of cold exposure or cold injury have not previously been assessed with quantitative sensory testing (QST). Commonly reported symptoms after exposure to HAV and after cold injuries, includes cold sensitivity and sensation of cold. Cold sensitivity can also occur without previous exposure to vibration or cold and may have a major impact on quality of life. Other possible risk factors for cold sensitivity need to be assessed. Sensation of cold hands could theoretically imply an early manifestation of damage to the neurosensory or vascular system, and therefore be of importance to enable early detection of vascular and neurosensory HAVS. The purpose of this thesis was to increase the knowledge about health effects from cold and HAV on the peripheral neurosensory and vascular system, with an occupational perspective. The aims were: first, to identify and evaluate health effects and sequelae in the peripheral neurosensory and vascular system due to cold injury and cold exposure; second, to investigate if sensation of cold hands is a predictor for future onset of Raynaud's phenomenon or paresthesia; and third, to identify possible risk factors associated with cold sensitivity.Methods A case series on 15 military conscripts with local cold injuries in the hands or feet, involving QST and symptom descriptions, was conducted to investigate the hypothesis that cold injuries can result in similar neurosensory and vascular impairments as in HAVS. To assess health effects of cold exposure, a cohort study on 54 military conscripts in cold winter military training, with cold exposure assessments, was conducted. Possible health effects were assessed after 14 months of military training, containing considerable cold exposure, by means of QST, Finger systolic blood pressure after local cooling (FSBP) and a questionnaire. To investigate if sensation of cold hands is a predictor for vascular or neurosensory HAVS we investigated a cohort of 178 employees at a manufacturing company where HAV was a common exposure. The cohort was followed during 21 years and both vibration exposure and health outcomes were assessed regularly. Questionnaire items were used to assess sensations of cold hands as well as signs of Raynaud’s phenomenon and paresthesia. To identify risk factors for cold sensitivity a case-control study was conducted involving 997iiiparticipants from the general population in northern Sweden. The study was cross-sectional and explored possible risk factors for cold sensitivity.Results Cold injuries and cold exposure were associated with reduced sensibility in QST and increase severity and prevalence of neurosensory and vascular symptoms. Our results did not show any impairment in peripheral blood flow due to cold exposure, detectable by FSBP. The risk of developing Raynaud's phenomenon was increased for workers previously reporting sensation of cold hands (OR 6.3, 95% CI 2.3-17.0). No increased risk for paresthesia in relation to a sensation of cold hands was observed. The identified risk factors for cold sensitivity were frostbite in the hands, rheumatic disease, nerve injury in upper extremities or neck, migraine and vascular disease. When analysing women and men separately, women’s risk factors were frostbite in the hands, rheumatic disease, migraine and cold exposure. Men’s risk factors were frostbite in the hands, vibration exposure and nerve injury in upper extremities or neck. BMI > 25 was a protective factor for both men and women.Conclusion Cold injury and cold exposure are associated with impairments in the neurosensory system, detectable by QST. Symptoms such as sensation of cold hands and white fingers indicate vascular involvement, even though no vascular impairments due to cold exposure could be detected by objective measurements. A sensation of cold hands is a risk factor for development of Raynaud´s phenomenon, but not for paresthesia. At the individual level, reporting cold hands does not appear to be useful information when considering the possibility of a future development of Raynaud’s phenomenon. Frostbite in the hands is a risk factor for cold sensitivity among both women and men. For women rheumatic disease, migraine and cold exposure are also independent risk factors, and for men, exposure to HAV. Being overweight is a protective factor for both women and men.
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