| 1. |
- Sampson, Joshua N., et al.
(författare)
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Analysis of Heritability and Shared Heritability Based on Genome-Wide Association Studies for 13 Cancer Types
- 2015
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Ingår i: Journal of the National Cancer Institute. - : Oxford University Press (OUP). - 0027-8874 .- 1460-2105. ; 107:12
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Tidskriftsartikel (refereegranskat)abstract
- Background: Studies of related individuals have consistently demonstrated notable familial aggregation of cancer. We aim to estimate the heritability and genetic correlation attributable to the additive effects of common single-nucleotide polymorphisms (SNPs) for cancer at 13 anatomical sites. Methods: Between 2007 and 2014, the US National Cancer Institute has generated data from genome-wide association studies (GWAS) for 49 492 cancer case patients and 34 131 control patients. We apply novel mixed model methodology (GCTA) to this GWAS data to estimate the heritability of individual cancers, as well as the proportion of heritability attributable to cigarette smoking in smoking-related cancers, and the genetic correlation between pairs of cancers. Results: GWAS heritability was statistically significant at nearly all sites, with the estimates of array-based heritability, h(l)(2), on the liability threshold (LT) scale ranging from 0.05 to 0.38. Estimating the combined heritability of multiple smoking characteristics, we calculate that at least 24% (95% confidence interval [CI] = 14% to 37%) and 7% (95% CI = 4% to 11%) of the heritability for lung and bladder cancer, respectively, can be attributed to genetic determinants of smoking. Most pairs of cancers studied did not show evidence of strong genetic correlation. We found only four pairs of cancers with marginally statistically significant correlations, specifically kidney and testes (rho = 0.73, SE = 0.28), diffuse large B-cell lymphoma (DLBCL) and pediatric osteosarcoma (rho = 0.53, SE = 0.21), DLBCL and chronic lymphocytic leukemia (CLL) (rho = 0.51, SE = 0.18), and bladder and lung (rho = 0.35, SE = 0.14). Correlation analysis also indicates that the genetic architecture of lung cancer differs between a smoking population of European ancestry and a nonsmoking Asian population, allowing for the possibility that the genetic etiology for the same disease can vary by population and environmental exposures. Conclusion: Our results provide important insights into the genetic architecture of cancers and suggest new avenues for investigation.
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| 2. |
- Wang, Zhaoming, et al.
(författare)
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Imputation and subset-based association analysis across different cancer types identifies multiple independent risk loci in the TERT-CLPTM1L region on chromosome 5p15.33
- 2014
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Ingår i: Human Molecular Genetics. - : Oxford University Press (OUP). - 0964-6906 .- 1460-2083. ; 23:24, s. 6616-6633
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Tidskriftsartikel (refereegranskat)abstract
- Genome-wide association studies (GWAS) have mapped risk alleles for at least 10 distinct cancers to a small region of 63 000 bp on chromosome 5p15.33. This region harbors the TERT and CLPTM1L genes; the former encodes the catalytic subunit of telomerase reverse transcriptase and the latter may play a role in apoptosis. To investigate further the genetic architecture of common susceptibility alleles in this region, we conducted an agnostic subset-based meta-analysis (association analysis based on subsets) across six distinct cancers in 34 248 cases and 45 036 controls. Based on sequential conditional analysis, we identified as many as six independent risk loci marked by common single-nucleotide polymorphisms: five in the TERT gene (Region 1: rs7726159, P = 2.10 × 10(-39); Region 3: rs2853677, P = 3.30 × 10(-36) and PConditional = 2.36 × 10(-8); Region 4: rs2736098, P = 3.87 × 10(-12) and PConditional = 5.19 × 10(-6), Region 5: rs13172201, P = 0.041 and PConditional = 2.04 × 10(-6); and Region 6: rs10069690, P = 7.49 × 10(-15) and PConditional = 5.35 × 10(-7)) and one in the neighboring CLPTM1L gene (Region 2: rs451360; P = 1.90 × 10(-18) and PConditional = 7.06 × 10(-16)). Between three and five cancers mapped to each independent locus with both risk-enhancing and protective effects. Allele-specific effects on DNA methylation were seen for a subset of risk loci, indicating that methylation and subsequent effects on gene expression may contribute to the biology of risk variants on 5p15.33. Our results provide strong support for extensive pleiotropy across this region of 5p15.33, to an extent not previously observed in other cancer susceptibility loci.
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| 3. |
- Han, Xinlu, et al.
(författare)
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A projection procedure to obtain adiabatic flames from non-adiabatic flames using heat flux method
- 2021
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Ingår i: Proceedings of the Combustion Institute. - : Elsevier BV. - 1540-7489. ; 38:2, s. 2143-2151
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Tidskriftsartikel (refereegranskat)abstract
- Laminar burning velocity S L at elevated temperature T u and its temperature dependence coefficient α in SL/S0L = (Tu T0u)α are important parameters for industrial applications. However, experimental systems with high unburned gas temperatures may encounter pre-dissociation, leading to significant data scattering in the measurements. To negate this, the present work proposes a projection procedure to obtain adiabatic flame parameters at various unburned gas temperatures using non-adiabatic flames on a heat flux burner, by which the preheating can be achieved within much shorter time scale than, e.g., in conventional spherical flame methods, and the advantage of good data consistency in the heat flux method is kept. Burning velocity experiments were carried out with CH 4 + air atmospheric flames covering T u = 298-473 K, and the results show good agreement with the proposed projection equations. OH * spontaneous emission profiles were measured, indicating that the projection may extend to other flame characteristics. Uncertainty of the projection process was evaluated and comparisons were made with six popular kinetic mechanisms: GRI-Mech, FFCM-1 mech, Konnov mechanism, Glarborg mechanism, San Diego mechanism and Aramco mechanism. It is found that the simulated coefficients α are higher than experimental data especially at rich conditions; this is also found for literature values of high unburned gas temperature experiments. Possible reasons for this divergence are discussed.
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| 4. |
- Han, Xinlu, et al.
(författare)
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Over-rich combustion of CH4, C2H6, and C3H8 +air premixed flames investigated by the heat flux method and kinetic modeling
- 2019
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Ingår i: Combustion and Flame. - : Elsevier BV. - 0010-2180. ; 210, s. 339-349
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Tidskriftsartikel (refereegranskat)abstract
- An uncommon non-monotonic behavior of the temperature dependence of adiabatic laminar burning velocity has been found in over-rich methane+air flames at equivalence ratio, ϕ = 1.4. To find out the universality and reasons of this turning point, methane, ethane and propane + air flames are studied both experimentally by the heat flux method and numerically using GRI-mech, USC-mech, UCSD-mech, FFCM mech, and Aramco mech over ϕ = 0.6–1.8, at unburned temperatures up to 368 K, and atmospheric pressure. Results show that the over-rich phenomena stem from a unique flame structure, where, after the flame front, H2O is reduced to H2 and C2Hx (x>1) is oxidized to CO, causing the temperature overtone (super adiabatic flame temperature), while some key reactions important for flame propagation changing their sensitivity signs. Inside the flame front, the importance of CH3 overwhelms other radicals like OH and H. By these distinguishing features, a method using temperature overtone to identify accurate turning points of over-rich regime is demonstrated.
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| 5. |
- Han, Xinlu, et al.
(författare)
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Parametrization of the temperature dependence of laminar burning velocity for methane and ethane flames
- 2019
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Ingår i: Fuel. - : Elsevier BV. - 0016-2361. ; 239, s. 1028-1037
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Tidskriftsartikel (refereegranskat)abstract
- The power exponent α in the temperature dependence of laminar burning velocity [Formula presented]=[Formula presented]α is usually considered an empirical parameter extracted from measurements performed at different temperatures. In this paper an analytical derivation of α is proposed, calculating the power exponent from the overall activation energy as: αTu 0→Tu =[Formula presented]·X+x. This relation is verified against experimental burning velocity data measured with the heat flux method and chemical kinetic models for flames with equivalence ratios, Φ, from 0.6 to 1.6 at up to 368 K unburned gas temperature and 1atm. Both methane and ethane were used as fuel. Laminar burning velocity predictions at elevated temperatures are made using proposed relation and the resulting values are in good agreement with existing data for methane flames up to 500 K. This indicates that the proposed mathematical derivation of α is accurate. In addition to providing a reliable extrapolation of the burning velocity at varying temperatures, isolating the temperature dependence of the power exponent α enables more accurate quantification of other factors, e.g., Φ, the unburned gas temperature and pressure, that influence laminar burning velocity. Additionally, it provides a simple means to evaluate the overall activation energy, Ea.
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| 6. |
- Han, Xinlu, et al.
(författare)
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Temperature dependence of the laminar burning velocity for n-heptane and iso-octane/air flames
- 2020
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Ingår i: Fuel. - : Elsevier BV. - 0016-2361. ; 276
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Tidskriftsartikel (refereegranskat)abstract
- The heat flux method is advantageous for obtaining adiabatic stretch-less flame and measuring laminar burning velocity, SL, with low uncertainty. However, its implementation is sometimes hampered by the instability, manifested as cellularity of the flame stabilized over a flat perforated burner. This paper summarizes the approaches of flame cellularity abatement on the heat flux burner, which are implemented in the present study for measuring burning velocities of n-heptane and iso-octane/air flames. The combination of approaches helped to effectively overcome the cellularity at the fuel-rich side of the tested flames, and the SL was measured at unburnt temperatures Tu=298K-358K and equivalence ratios ϕ=0.7-1.6, at atmospheric pressure, with the SL uncertainty being evaluated. Numerical simulations were carried out using LLNL mechanism, Chaos mechanism and Luong171 mechanism, and the results agree well with the experimental data. From the obtained experimental and numerical SL data, the temperature coefficients α in [Formula presented] as well as the overall activation energy, Ea, were derived. It was noted that for n-heptane and iso-octane/air flames, the tendencies of the α and Ea against ϕ resemble those for methane, ethane, and propane/air flames. Distinct over-rich flame structures were observed and discussed for n-heptane and iso-octane/air flames around ϕ≥1.5. Moreover, extrapolation proced/ure of the SLmeasurements was validated using analytical presentation of the heat flux method sensitivity, s vs. [Formula presented], and other parameters involved in the data processing, which may help to improve the accuracy of future experiments.
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| 7. |
- He, Lei, et al.
(författare)
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Non-symmetric responses of leaf onset date to natural warming and cooling in northern ecosystems
- 2023
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Ingår i: PNAS Nexus. - 2752-6542. ; 2:9
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Tidskriftsartikel (refereegranskat)abstract
- The northern hemisphere has experienced regional cooling, especially during the global warming hiatus (1998-2012) due to ocean energy redistribution. However, the lack of studies about the natural cooling effects hampers our understanding of vegetation responses to climate change. Using 15,125 ground phenological time series at 3,620 sites since the 1950s and 31-year satellite greenness observations (1982-2012) covering the warming hiatus period, we show a stronger response of leaf onset date (LOD) to natural cooling than to warming, i.e. the delay of LOD caused by 1°C cooling is larger than the advance of LOD with 1°C warming. This might be because cooling leads to larger chilling accumulation and heating requirements for leaf onset, but this non-symmetric LOD response is partially offset by warming-related drying. Moreover, spring greening magnitude, in terms of satellite-based greenness and productivity, is more sensitive to LOD changes in the warming area than in the cooling. These results highlight the importance of considering non-symmetric responses of spring greening to warming and cooling when predicting vegetation-climate feedbacks.
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| 8. |
- Liu, Junwei, et al.
(författare)
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Polymer synergy for efficient hole transport in solar cells and photodetectors
- 2023
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Ingår i: Energy & Environmental Science. - : ROYAL SOC CHEMISTRY. - 1754-5692 .- 1754-5706.
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Tidskriftsartikel (refereegranskat)abstract
- Hole transport materials (HTMs) have greatly advanced the progress of solution-based electronic devices in the past few years. Nevertheless, most devices employing dopant-free organic HTMs can only deliver inferior performance. In this work, we introduced a novel "polymer synergy" strategy to develop versatile dopant-free polymer HTMs for quantum dot/perovskite solar cells and photodetectors. With this synergy strategy, the optical, electrical and aggregation properties of polymer HTMs can be modulated, resulting in complementary absorption, high hole mobility, favorable energy landscape and moderate aggregation. Moreover, a clear orientational transition was observed for the developed HTMs with a 9-fold increase in the face-on/edge-on ratio, providing a highway-like carrier transport for electronic devices, as revealed by in situ characterization and ultrafast transient absorption. With these benefits, the photovoltaic and photodetection performance of quantum dot devices were boosted from 11.8% to 13.5% and from 2.95 x 10(12) to 3.41 x 10(13) Jones (over a 10-fold increase), respectively. Furthermore, the developed polymer HTMs can also significantly enhance the photovoltaic and photodetection performance of perovskite devices from 15.1% to 22.7% and from 2.7 x 10(12) to 2.17 x 10(13)Jones with the same device structure, indicating their great application potential in the emerging optoelectronics.
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| 9. |
- Shen, Qian, et al.
(författare)
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The Genome of Artemisia annua Provides Insight into the Evolution of Asteraceae Family and Artemisinin Biosynthesis
- 2018
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Ingår i: Molecular Plant. - : Cell Press. - 1674-2052 .- 1752-9867. ; 11:6, s. 776-788
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Tidskriftsartikel (refereegranskat)abstract
- Artemisia annua, commonly known as sweet wormwood or Qinghao, is a shrub native to China and has long been used for medicinal purposes. A. annua is now cultivated globally as the only natural source of a potent anti-malarial compound, artemisinin. Here, we report a high-quality draft assembly of the 1.74-gigabase genome of A. annua, which is highly heterozygous, rich in repetitive sequences, and contains 63 226 protein-coding genes, one of the largest numbers among the sequenced plant species. We found that, as one of a few sequenced genomes in the Asteraceae, the A. annua genome contains a large number of genes specific to this large angiosperm clade. Notably, the expansion and functional diversification of genes encoding enzymes involved in terpene biosynthesis are consistent with the evolution of the artemisinin biosynthetic pathway. We further revealed by transcriptome profiling that A. annua has evolved the sophisticated transcriptional regulatory networks underlying artemisinin biosynthesis. Based on comprehensive genomic and transcriptomic analyses we generated transgenic A. annua lines producing high levels of artemisinin, which are now ready for large-scale production and thereby will help meet the challenge of increasing global demand of artemisinin.
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| 10. |
- Wang, Gang, et al.
(författare)
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Aggregation control in natural brush-printed conjugated polymer films and implications for enhancing charge transport
- 2017
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Ingår i: Proceedings of the National Academy of Sciences of the United States of America. - : NATL ACAD SCIENCES. - 0027-8424 .- 1091-6490. ; 114:47, s. E10066-E10073
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Tidskriftsartikel (refereegranskat)abstract
- Shear-printing is a promising processing technique in organic electronics for microstructure/charge transport modification and large-area film fabrication. Nevertheless, the mechanism by which shear-printing can enhance charge transport is not well-understood. In this study, a printing method using natural brushes is adopted as an informative tool to realize direct aggregation control of conjugated polymers and to investigate the interplay between printing parameters, macromolecule backbone alignment and aggregation, and charge transport anisotropy in a conjugated polymer series differing in architecture and electronic structure. This series includes (i) semicrystalline hole-transporting P3HT, (ii) semicrystalline electron transporting N2200, (iii) low-crystallinity hole-transporting PBDTT-FTTE, and (iv) low-crystallinity conducting PEDOT:PSS. The (semi-)conducting films are characterized by a battery of morphology and microstructure analysis techniques and by charge transport measurements. We report that remarkably enhanced mobilities/conductivities, as high as 5.7x/3.9x, are achieved by controlled growth of nanofibril aggregates and by backbone alignment, with the adjusted R-2 (R-adj(2)) correlation between aggregation and charge transport as high as 95%. However, while shear-induced aggregation is important for enhancing charge transport, backbone alignment alone does not guarantee charge transport anisotropy. The correlations between efficient charge transport and aggregation are clearly shown, while mobility and degree of orientation are not always well-correlated. These observations provide insights into macroscopic charge transport mechanisms in conjugated polymers and suggest guidelines for optimization.
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