| 1. |
- Abe, K., et al.
(författare)
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J-PARC Neutrino Beamline Upgrade Technical Design Report
- 2019
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Rapport (refereegranskat)abstract
- In this document, technical details of the upgrade plan of the J-PARC neutrino beamline for the extension of the T2K experiment are described. T2K has proposed to accumulate data corresponding to 2×1022 protons-on-target in the next decade, aiming at an initial observation of CP violation with 3σ or higher significance in the case of maximal CP violation. Methods to increase the neutrino beam intensity, which are necessary to achieve the proposed data increase, are described.
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| 2. |
- Abe, K., et al.
(författare)
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Neutron tagging following atmospheric neutrino events in a water Cherenkov detector
- 2022
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Ingår i: Journal of Instrumentation. - : Institute of Physics (IOP). - 1748-0221. ; 17:10
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Tidskriftsartikel (refereegranskat)abstract
- We present the development of neutron-tagging techniques in Super-Kamiokande IV using a neural network analysis. The detection efficiency of neutron capture on hydrogen is estimated to be 26%, with a mis-tag rate of 0.016 per neutrino event. The uncertainty of the tagging efficiency is estimated to be 9.0%. Measurement of the tagging efficiency with data from an Americium-Beryllium calibration agrees with this value within 10%. The tagging procedure was performed on 3,244.4 days of SK-IV atmospheric neutrino data, identifying 18,091 neutrons in 26,473 neutrino events. The fitted neutron capture lifetime was measured as 218 +/- 9 mu s.
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| 3. |
- Xiao, Wenming, et al.
(författare)
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Toward best practice in cancer mutation detection with whole-genome and whole-exome sequencing
- 2021
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Ingår i: Nature Biotechnology. - : Springer Nature. - 1087-0156 .- 1546-1696. ; 39:9, s. 1141-1150
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Tidskriftsartikel (refereegranskat)abstract
- Recommendations are given on optimal read coverage and selection of calling algorithm to maximize the reproducibility of cancer mutation detection in whole-genome or whole-exome sequencing. Clinical applications of precision oncology require accurate tests that can distinguish true cancer-specific mutations from errors introduced at each step of next-generation sequencing (NGS). To date, no bulk sequencing study has addressed the effects of cross-site reproducibility, nor the biological, technical and computational factors that influence variant identification. Here we report a systematic interrogation of somatic mutations in paired tumor-normal cell lines to identify factors affecting detection reproducibility and accuracy at six different centers. Using whole-genome sequencing (WGS) and whole-exome sequencing (WES), we evaluated the reproducibility of different sample types with varying input amount and tumor purity, and multiple library construction protocols, followed by processing with nine bioinformatics pipelines. We found that read coverage and callers affected both WGS and WES reproducibility, but WES performance was influenced by insert fragment size, genomic copy content and the global imbalance score (GIV; G > T/C > A). Finally, taking into account library preparation protocol, tumor content, read coverage and bioinformatics processes concomitantly, we recommend actionable practices to improve the reproducibility and accuracy of NGS experiments for cancer mutation detection.
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| 4. |
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| 5. |
- Krokene, Paal, et al.
(författare)
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Pest risk categorization – New plant health regulations for Norway : Scientific Opinion of the Panel on Plant Health of the Norwegian Scientific Committee for Food and Environment
- 2021
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Rapport (refereegranskat)abstract
- In an ongoing effort to renew Norwegian regulations related to plants and measures against plant pests, the Norwegian Food Safety Authority asked The Norwegian Scientific Committee for Food and Environment (VKM) which of the currently regulated pests that should still be regulated (either as a quarantine pest (QP) or a regulated non-quarantine pest (RNQP) for Norway), and whether there are any species that should be deregulated. Following such a risk categorization process the Norwegian Food Safety Authority will determine if pest risk assessments (PRA’s) should be performed for quarantine pests. International trade regulations define quarantine pests (QPs) as pests of potential economic importance to an area that are not yet present, or are present but not widely distributed and are subject to official control. A regulated non-quarantine pest (RNQP) is a pest whose presence in plants for planting affects the intended use of those plants with an economically unacceptable impact and which is therefore subject to official control within the territory of the importing contracting party and regulated in international trade. In this report VKM presents an overview of the pest categorisation of some of the pests regulated in the current Norwegian regulation and concludes on whether each pest should be regulated as a potential QP, RNQP or none of these categories for Norway. The pest categorisation process – the process of determining whether a pest has or has not the characteristics of a QP or RNQP – has been done using the FinnPRIO model. The FinnPRIO model is a pest risk ranking tool that uses a hypervolume approach carry out quick, semiquantitative expert assessments and that allows a high number of pest risk categorizations to be done cost-effectively and in a short period of time. In total 33 pests were assessed as per request from the Norwegian Food Safety Authority. Of those 33 pests VKM suggests that the vast majority – 32 pests – are kept as a QPs for Norway. However, one pest, the cherry leafroll nepovirus (EPPO code CLRV00), fulfils the requirements for being a RNQP since it is most likely present in Norway already. Furthermore, one organism, the flatworm Arthurdendyus triangulates (ARDDTR), is suggested to not be regulated as QP or RNQP. This pest does not fulfil the requirements for being a QP since it would probably not cause direct damage to plants if it established in Norway. Also, it does not fulfill the requirements for being a regulated non-quarantine pest(RNQP) since its potential presence in plants for planting does not directly affect the intended use of those plants with an economically unacceptable impact.
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| 6. |
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| 7. |
- Rogers, David, et al.
(författare)
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Highlights of Coastal Waves 1996
- 1998
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Ingår i: Bulletin of The American Meteorological Society - (BAMS). - 0003-0007 .- 1520-0477. ; 79, s. 1307-1326
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Tidskriftsartikel (refereegranskat)
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| 8. |
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| 9. |
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| 10. |
- Thomsen, Iben M., et al.
(författare)
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Risk assessment of six commercial mycorrhizal products : Opinion of the Panel on Plant Health of the Norwegian Scientific Committee for Food and Environment
- 2020
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Rapport (övrigt vetenskapligt/konstnärligt)abstract
- Mycorrhiza is a beneficial association between plant roots and fungi. This mutualistic symbiosis is essential for plant growth in most natural terrestrial ecosystems and in agriculture. Commercial mycorrhizal products containing fungi and bacteria may promote plant growth, especially on sites without a natural microbial community. Due to the risk of unintended negative effects, introduction of new species or genetically different isolates of native species should always be considered carefully. This report assesses the risk of establishment and spread of six fungal species and six bacterial species included in different commercial mycorrhizal products, as well as the species’ potential impact on Norwegian biodiversity. Most of the evaluated fungi and bacteria are probably present in Norway, even though presence at present data only exist for two of the six fungal species. Establishment of the assessed fungi on the plants and sites where they are applied is considered moderately likely, with medium uncertainty, while establishment of the bacterial species is considered to range from very unlikely to very likely depending on the bacterial group, with low uncertainty. The probability of spread to the wider environment ranges from unlikely (four fungal species), to moderately likely (two fungal species), to very likely (five of the six bacterial species). However, for all species it is considered unlikely that establishment and spread would have negative effects on other native species, habitats and ecosystems in Norway.
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