| 1. |
- Begam, Nafisa, et al.
(författare)
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Effects of temperature and ionic strength on the microscopic structure and dynamics of egg white gels
- 2023
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Ingår i: Journal of Chemical Physics. - : AIP Publishing. - 0021-9606 .- 1089-7690. ; 158:7
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Tidskriftsartikel (refereegranskat)abstract
- We investigate the thermal gelation of egg white proteins at different temperatures with varying salt concentrations using x-ray photon correlation spectroscopy in the geometry of ultra-small angle x-ray scattering. Temperature-dependent structural investigation suggests a faster network formation with increasing temperature, and the gel adopts a more compact network, which is inconsistent with the conventional understanding of thermal aggregation. The resulting gel network shows a fractal dimension δ, ranging from 1.5 to 2.2. The values of δ display a non-monotonic behavior with increasing amount of salt. The corresponding dynamics in the q range of 0.002–0.1 nm−1 is observable after major change of the gel structure. The extracted relaxation time exhibits a two-step power law growth in dynamics as a function of waiting time. In the first regime, the dynamics is associated with structural growth, whereas the second regime is associated with the aging of the gel, which is directly linked with its compactness, as quantified by the fractal dimension. The gel dynamics is characterized by a compressed exponential relaxation with a ballistic-type of motion. The addition of salt gradually makes the early stage dynamics faster. Both gelation kinetics and microscopic dynamics show that the activation energy barrier in the system systematically decreases with increasing salt concentration.
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| 2. |
- Berkowicz, Sharon, 1994-, et al.
(författare)
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Resolving nanoscale dynamics during a liquid-liquid transition in supercooled glycerol-water solutions
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Annan publikation (övrigt vetenskapligt/konstnärligt)abstract
- It is proposed that a liquid-liquid transition (LLT), related to the hypothesized transition between high- and low-density liquids (HDL, LDL) in pure water, also exists in supercooled aqueous mixtures. However, experimental observations of the LLT in the supercooled solution is often complicated by the overlap with freezing. Here, we conducted an experiment probing the hypothesized LLT in deeply supercooled 16.5 mol% glycerol-water solution, combining X-ray photon correlation spectroscopy (XPCS), ultra small-angle X-ray scattering (USAXS) and wide-angle X-ray scattering (WAXS). This approach allows us to capture simultaneous, discontinuous structural and dynamic changes within the supercooled liquid following quenching to cryogenic temperatures (172-182 K). We observe changes in the inter-atomic liquid structure (from WAXS) as well as in the nanoscale structure and dynamics (from USAXS/XPCS), resembling a first-order LLT between HDL-like to LDL-like liquid. Importantly, we find that the LLT precedes the onset of ice crystalliization, which we can distinguish based on the advent of ice bragg peaks in WAXS. In addition, analysis of the two-time correlation (TTC) function from XPCS enables us to follow the dynamics during the LLT, which indicates super-diffusive ballistic-like motion and a gradual slowdown towards an arrested state upon freezing, consistent with an LLT via spinodal decomposition. We conclude that these results indicate the existence of a first-order LLT in supercooled glycerol-water solutions at intermediate glycerol concentrations, similar to that hypothesized for pure water at elevated pressures.
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| 3. |
- Bin, Maddalena, et al.
(författare)
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Coherent X-ray Scattering Reveals Nanoscale Fluctuations in Hydrated Proteins
- 2023
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Ingår i: Journal of Physical Chemistry B. - : American Chemical Society (ACS). - 1520-6106 .- 1520-5207. ; 127:21, s. 4922-4930
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Tidskriftsartikel (refereegranskat)abstract
- Hydrated proteins undergo a transition in the deeply supercooled regime, which is attributed to rapid changes in hydration water and protein structural dynamics. Here, we investigate the nanoscale stress-relaxation in hydrated lysozyme proteins stimulated and probed by X-ray Photon Correlation Spectroscopy (XPCS). This approach allows us to access the nanoscale dynamics in the deeply supercooled regime (T = 180 K), which is typically not accessible through equilibrium methods. The observed stimulated dynamic response is attributed to collective stress-relaxation as the system transitions from a jammed granular state to an elastically driven regime. The relaxation time constants exhibit Arrhenius temperature dependence upon cooling with a minimum in the Kohlrausch-Williams-Watts exponent at T = 227 K. The observed minimum is attributed to an increase in dynamical heterogeneity, which coincides with enhanced fluctuations observed in the two-time correlation functions and a maximum in the dynamic susceptibility quantified by the normalized variance χT. The amplification of fluctuations is consistent with previous studies of hydrated proteins, which indicate the key role of density and enthalpy fluctuations in hydration water. Our study provides new insights into X-ray stimulated stress-relaxation and the underlying mechanisms behind spatiotemporal fluctuations in biological granular materials.
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| 4. |
- Kemppainen, Joni, et al.
(författare)
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Binocular mirror–symmetric microsaccadic sampling enables Drosophila hyperacute 3D vision
- 2022
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Ingår i: Proceedings of the National Academy of Sciences of the United States of America. - : Proceedings of the National Academy of Sciences. - 0027-8424. ; 119:12
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Tidskriftsartikel (refereegranskat)abstract
- Neural mechanisms behind stereopsis, which requires simultaneous disparity inputs from two eyes, have remained mysterious. Here we show how ultrafast mirror-symmetric photomechanical contractions in the frontal forward-facing left and right eye photoreceptors give Drosophila superresolution three-dimensional (3D) vision. By interlinking multiscale in vivo assays with multiscale simulations, we reveal how these photoreceptor microsaccades—by verging, diverging, and narrowing the eyes’ overlapping receptive fields—channel depth information, as phasic binocular image motion disparity signals in time. We further show how peripherally, outside stereopsis, microsaccadic sampling tracks a flying fly’s optic flow field to better resolve the world in motion. These results change our understanding of how insect compound eyes work and suggest a general dynamic stereo-information sampling strategy for animals, robots, and sensors.
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| 5. |
- Ladd-Parada, Marjorie, et al.
(författare)
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Using coherent X-rays to follow dynamics in amorphous ices
- 2022
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Ingår i: Environmental Science. - : Royal Society of Chemistry (RSC). - 2634-3606. ; 2:6, s. 1314-1323
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Tidskriftsartikel (refereegranskat)abstract
- Amorphous solid water plays an important role in our overall understanding of water's phase diagram. X-ray scattering is an important tool for characterising the different states of water, and modern storage ring and XFEL facilities have opened up new pathways to simultaneously study structure and dynamics. Here, X-ray photon correlation spectroscopy (XPCS) was used to study the dynamics of high-density amorphous (HDA) ice upon heating. We follow the structural transition from HDA to low-density amorphous (LDA) ice, by using wide-angle X-ray scattering (WAXS), for different heating rates. We used a new type of sample preparation, which allowed us to study μm-sized ice layers rather than powdered bulk samples. The study focuses on the non-equilibrium dynamics during fast heating, spontaneous transformation and crystallization. Performing the XPCS study at ultra-small angle (USAXS) geometry allows us to characterize the transition dynamics at length scales ranging from 60 nm–800 nm. For the HDA-LDA transition we observe a clear separation in three dynamical regimes, which show different dynamical crossovers at different length scales. The crystallization from LDA, instead, is observed to appear homogenously throughout the studied length scales.
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| 6. |
- Li, Hailong, et al.
(författare)
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Intrinsic Dynamics of Amorphous Ice Revealed by a Heterodyne Signal in X-ray Photon Correlation Spectroscopy Experiments
- 2023
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Ingår i: The Journal of Physical Chemistry Letters. - : American Chemical Society (ACS). - 1948-7185. ; 14:49, s. 10999-11007
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Tidskriftsartikel (refereegranskat)abstract
- Unraveling the mechanism of water's glass transition and the interconnection between amorphous ices and liquid water plays an important role in our overall understanding of water. X-ray photon correlation spectroscopy (XPCS) experiments were conducted to study the dynamics and the complex interplay between the hypothesized glass transition in high-density amorphous ice (HDA) and the subsequent transition to low-density amorphous ice (LDA). Our XPCS experiments demonstrate that a heterodyne signal appears in the correlation function. Such a signal is known to originate from the interplay of a static component and a dynamic component. Quantitative analysis was performed on this heterodyne signal to extract the intrinsic dynamics of amorphous ice during the HDA-LDA transition. An angular dependence indicates non-isotropic, heterogeneous dynamics in the sample. Using the Stokes-Einstein relation to extract diffusion coefficients, the data are consistent with the scenario of static LDA islands floating within a diffusive matrix of high-density liquid water.
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| 7. |
- Timmermann, Sonja, et al.
(författare)
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Automated matching of two-time X-ray photon correlation mans from phase-separating proteins with Cahn-Hilliard-type simulations using auto-encoder networks
- 2022
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Ingår i: Journal of applied crystallography. - 0021-8898 .- 1600-5767. ; 55, s. 751-757
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Tidskriftsartikel (refereegranskat)abstract
- Machine learning methods are used for an automated classification of experimental two-time X-ray photon correlation maps from an arrested liquid–liquid phase separation of a protein solution. The correlation maps are matched with correlation maps generated with Cahn–Hilliard-type simulations of liquid–liquid phase separations according to two simulation parameters and in the last step interpreted in the framework of the simulation. The matching routine employs an auto-encoder network and a differential evolution based algorithm. The method presented here is a first step towards handling large amounts of dynamic data measured at high-brilliance synchrotron and X-ray free-electron laser sources, facilitating fast comparison with phase field models of phase separation.
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