| 1. |
- Birney, Ewan, et al.
(författare)
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Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
- 2007
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Ingår i: Nature. - : Springer Science and Business Media LLC. - 0028-0836 .- 1476-4687. ; 447:7146, s. 799-816
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Tidskriftsartikel (refereegranskat)abstract
- We report the generation and analysis of functional data from multiple, diverse experiments performed on a targeted 1% of the human genome as part of the pilot phase of the ENCODE Project. These data have been further integrated and augmented by a number of evolutionary and computational analyses. Together, our results advance the collective knowledge about human genome function in several major areas. First, our studies provide convincing evidence that the genome is pervasively transcribed, such that the majority of its bases can be found in primary transcripts, including non-protein-coding transcripts, and those that extensively overlap one another. Second, systematic examination of transcriptional regulation has yielded new understanding about transcription start sites, including their relationship to specific regulatory sequences and features of chromatin accessibility and histone modification. Third, a more sophisticated view of chromatin structure has emerged, including its inter-relationship with DNA replication and transcriptional regulation. Finally, integration of these new sources of information, in particular with respect to mammalian evolution based on inter- and intra-species sequence comparisons, has yielded new mechanistic and evolutionary insights concerning the functional landscape of the human genome. Together, these studies are defining a path for pursuit of a more comprehensive characterization of human genome function.
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| 2. |
- Yong, Zhengdong, et al.
(författare)
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Broadband Nanoantennas for Plasmon Enhanced Fluorescence and Raman Spectroscopies
- 2015
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Ingår i: Progress In Electromagnetics Research. - : EMW Publishing. - 1070-4698 .- 1559-8985. ; 153, s. 123-131
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Tidskriftsartikel (refereegranskat)abstract
- We propose a novel design of broadband plasmonic nanoantenna that is suitable for fluorescence and Raman enhancement. The structure consists of a gold nanoring and bowties at the center. We numerically investigate the near field and far field performance by employing the finite-difference time-domain method. High Purcell enhancement and large SERS are demonstrated in a record wide spectral bandwidth of 700 nm based on a single emitter-antenna configuration. Moreover, unlike a traditional antenna design, the proposed nanoantenna has low heat generation and high field enhancement at the gap simultaneously when operating off resonance.
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| 3. |
- Yong, Zhengdong, et al.
(författare)
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Narrow band perfect absorber for maximum localized magnetic and electric field enhancement and sensing applications
- 2016
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Ingår i: Scientific Reports. - : Springer Science and Business Media LLC. - 2045-2322. ; 6
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Tidskriftsartikel (refereegranskat)abstract
- Plasmonics offer an exciting way to mediate the interaction between light and matter, allowing strong field enhancement and confinement, large absorption and scattering at resonance. However, simultaneous realization of ultra-narrow band perfect absorption and electromagnetic field enhancement is challenging due to the intrinsic high optical losses and radiative damping in metals. Here, we propose an all-metal plasmonic absorber with an absorption bandwidth less than 8 nm and polarization insensitive absorptivity exceeding 99%. Unlike traditional Metal-Dielectric-Metal configurations, we demonstrate that the narrowband perfect absorption and field enhancement are ascribed to the vertical gap plasmonic mode in the deep subwavelength scale, which has a high quality factor of 120 and mode volume of about 10(-4) x (lambda(res)/n)(3). Based on the coupled mode theory, we verify that the diluted field enhancement is proportional to the absorption, and thus perfect absorption is critical to maximum field enhancement. In addition, the proposed perfect absorber can be operated as a refractive index sensor with a sensitivity of 885 nm/RIU and figure of merit as high as 110. It provides a new design strategy for narrow band perfect absorption and local field enhancement, and has potential applications in biosensors, filters and nonlinear optics.
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| 4. |
- Zhang, Senlin, et al.
(författare)
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Numerical analysis of an optical nanoscale particles trapping device based on a slotted nanobeam cavity
- 2016
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Ingår i: Scientific Reports. - : Springer Science and Business Media LLC. - 2045-2322. ; 6
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Tidskriftsartikel (refereegranskat)abstract
- A slotted nanobeam cavity (SNC) is utilized to trap a polystyrene (PS) particle with a radius of only 2 nm. The carefully designed SNC shows an ultrahigh Q factor of 4.5 x 10(7) while maintaining a small mode volume of 0.067(lambda/n(water))(3). Strongly enhanced optical trapping force is numerically demonstrated when the 2 nm PS particle is introduced into the central, slotted part of the SNC. In the vertical direction, the numerical calculation results show that a trapping stiffness of 0.4 pN/(nm.mW) around the equilibrium position and a trapping potential barrier of similar to 2000 k(B)T/mW can be reached. To our best knowledge, the trapping capability (trapping stiffness and trapping potential barrier) of the proposed structure significantly outperforms the theoretical results of those in previously reported work. In addition, the SNC system does not suffer from the metal induced heat issue that restricts the performance of state-of-the-art optical trapping systems involving plasmonic enhancement. Based on the proposed cavity, applications such as lab-on-a-chip platforms for nanoscale particle trapping and analysis can be expected in future.
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