| 1. |
- Beal, Jacob, et al.
(författare)
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Robust estimation of bacterial cell count from optical density
- 2020
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Ingår i: Communications Biology. - : Springer Science and Business Media LLC. - 2399-3642. ; 3:1
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Tidskriftsartikel (refereegranskat)abstract
- Optical density (OD) is widely used to estimate the density of cells in liquid culture, but cannot be compared between instruments without a standardized calibration protocol and is challenging to relate to actual cell count. We address this with an interlaboratory study comparing three simple, low-cost, and highly accessible OD calibration protocols across 244 laboratories, applied to eight strains of constitutive GFP-expressing E. coli. Based on our results, we recommend calibrating OD to estimated cell count using serial dilution of silica microspheres, which produces highly precise calibration (95.5% of residuals <1.2-fold), is easily assessed for quality control, also assesses instrument effective linear range, and can be combined with fluorescence calibration to obtain units of Molecules of Equivalent Fluorescein (MEFL) per cell, allowing direct comparison and data fusion with flow cytometry measurements: in our study, fluorescence per cell measurements showed only a 1.07-fold mean difference between plate reader and flow cytometry data.
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| 2. |
- Zhang, Zhixin, et al.
(författare)
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Vectorized rooftop area data for 90 cities in China
- 2022
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Ingår i: Scientific Data. - : Springer Nature. - 2052-4463. ; 9:1
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Tidskriftsartikel (refereegranskat)abstract
- Reliable information on building rooftops is crucial for utilizing limited urban space effectively. In recent decades, the demand for accurate and up-to-date data on the areas of rooftops on a large-scale is increasing. However, obtaining these data is challenging due to the limited capability of conventional computer vision methods and the high cost of 3D modeling involving aerial photogrammetry. In this study, a geospatial artificial intelligence framework is presented to obtain data for rooftops using high-resolution open-access remote sensing imagery. This framework is used to generate vectorized data for rooftops in 90 cities in China. The data was validated on test samples of 180 km(2) across different regions with spatial resolution, overall accuracy, and F1 score of 1 m, 97.95%, and 83.11%, respectively. In addition, the generated rooftop area conforms to the urban morphological characteristics and reflects urbanization level. These results demonstrate that the generated dataset can be used for data support and decision-making that can facilitate sustainable urban development effectively.
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| 3. |
- Wu, Chuansha, et al.
(författare)
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Modification of Food Allergy on the Associations between Early Life Exposure to Size-Specific Particulate Matter and Childhood Allergic Rhinitis
- 2024
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Ingår i: Environmental Science and Technology. - : American Chemical Society (ACS). - 0013-936X .- 1520-5851. ; 58:4, s. 1813-1822
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Tidskriftsartikel (refereegranskat)abstract
- Previous studies have reported the association between particulate matter (PM) and childhood allergic rhinitis (AR). However, it is unclear whether food allergy (FA) modifies the PM-AR association. We aimed at evaluating the effect of the modification of FA on PM-AR association in preschool children. We adopted a cross-sectional study and conducted a questionnaire survey among preschool children aged 3-6 years in 7 cities in China from June 2019 to June 2020 to collect information on AR and FA. We used a combination of multilevel logistic regression and restricted cubic spline functions to quantitatively assess whether FA modifies the associations between size-specific PM exposure (1 x 1 km) and the risk of AR. The adjusted odds ratios (ORs) for AR among the children with FA as per a 10 mu g/m(3) increase in early life PM1, PM2.5, and PM10 were significantly higher than the corresponding ORs among the children without FA [e.g., OR: 1.58, 95% CI: (1.32, 1.90) vs 1.29, 95% CI: (1.18, 1.41), per 10 mu g/m(3) increase in PM1]. The interactions between FA and size-specific PM exposure and their effects on AR were statistically significant (all p-int < 0.001). FA, as an important part of the allergic disease progression, may modify the PM-AR association in preschool children.
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| 4. |
- Abdoullaye, Doukary, et al.
(författare)
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Permanent genetic resources added to molecular ecology resources database 1 August 2009 - 30 September 2009
- 2010
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Ingår i: Molecular Ecology Resources. - : Wiley. - 1755-098X .- 1755-0998. ; 10:1, s. 232-236
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Tidskriftsartikel (refereegranskat)abstract
- This article documents the addition of 238 microsatellite marker loci and 72 pairs of Single Nucleotide Polymorphism (SNP) sequencing primers to the Molecular Ecology Resources Database. Loci were developed for the following species: Adelges tsugae, Artemisia tridentata, Astroides calycularis, Azorella selago, Botryllus schlosseri, Botrylloides violaceus, Cardiocrinum cordatum var. glehnii, Campylopterus curvipennis, Colocasia esculenta, Cynomys ludovicianus, Cynomys leucurus, Cynomys gunnisoni, Epinephelus coioides, Eunicella singularis, Gammarus pulex, Homoeosoma nebulella, Hyla squirella, Lateolabrax japonicus, Mastomys erythroleucus, Pararge aegeria, Pardosa sierra, Phoenicopterus ruber ruber and Silene latifolia. These loci were cross-tested on the following species: Adelges abietis, Adelges cooleyi, Adelges piceae, Pineus pini, Pineus strobi, Tubastrea micrantha, three other Tubastrea species, Botrylloides fuscus, Botrylloides simodensis, Campylopterus hemileucurus, Campylopterus rufus, Campylopterus largipennis, Campylopterus villaviscensio, Phaethornis longuemareus, Florisuga mellivora, Lampornis amethystinus, Amazilia cyanocephala, Archilochus colubris, Epinephelus lanceolatus, Epinephelus fuscoguttatus, Symbiodinium temperate-A clade, Gammarus fossarum, Gammarus roeselii, Dikerogammarus villosus and Limnomysis benedeni. This article also documents the addition of 72 sequencing primer pairs and 52 allele specific primers for Neophocaena phocaenoides.
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| 5. |
- Anderson, Cynthia M., et al.
(författare)
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Permanent Genetic Resources added to Molecular Ecology Resources Database 1 December 2009-31 January 2010
- 2010
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Ingår i: Molecular Ecology Resources. - : Wiley. - 1755-098X .- 1755-0998. ; 10:3, s. 576-579
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Tidskriftsartikel (refereegranskat)abstract
- This article documents the addition of 220 microsatellite marker loci to the Molecular Ecology Resources Database. Loci were developed for the following species: Allanblackia floribunda, Amblyraja radiata, Bactrocera cucurbitae, Brachycaudus helichrysi, Calopogonium mucunoides, Dissodactylus primitivus, Elodea canadensis, Ephydatia fluviatilis, Galapaganus howdenae howdenae, Hoplostethus atlanticus, Ischnura elegans, Larimichthys polyactis, Opheodrys vernalis, Pelteobagrus fulvidraco, Phragmidium violaceum, Pistacia vera, and Thunnus thynnus. These loci were cross-tested on the following species: Allanblackia gabonensis, Allanblackia stanerana, Neoceratitis cyanescens, Dacus ciliatus, Dacus demmerezi, Bactrocera zonata, Ceratitis capitata, Ceratitis rosa, Ceratits catoirii, Dacus punctatifrons, Ephydatia mulleri, Spongilla lacustris, Geodia cydonium, Axinella sp., Ischnura graellsii, Ischnura ramburii, Ischnura pumilio, Pistacia integerrima and Pistacia terebinthus.
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| 6. |
- Chen, Haoqian, et al.
(författare)
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Towards renewable public transport : Mining the performance of electric buses using solar-radiation as an auxiliary power source
- 2022
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Ingår i: Applied Energy. - : ELSEVIER SCI LTD. - 0306-2619 .- 1872-9118. ; 325
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Tidskriftsartikel (refereegranskat)abstract
- Transforming the road public transport to run on renewable energy is vital solution to achieve carbon neutral and net zero goals. This paper evaluates the potential of using solar radiation-generated electricity as an auxiliary power supplementary for the battery of electric buses, based on a developed framework that using publicly street-view panoramas, GPS trajectory data and DEM data as input parameters of solar radiation model. A case study of Qingdao, China with 547 bus routes, 28,661 street-view panoramas shows that the solar-radiation electricity generated at noon during the operation accounts for about one-fifth, one-eighth of the total elec-tricity consumption of a bus traveling one kilometer in a sunny day and a cloudy day, respectively. Spatial variability shows significant solar-radiation power generation advantages in newly-launched areas and expressway. The solar power generated in a sunny day can make a bus half of passengers and with air conditioner off at least one extra trip in 2:1 replacement schedule, and nearly close to one extra trip in 4:3 replacement schedule. A correlated relation between the solar-radiation power generation benefit and the operation schedule of electric buses is observed, implying that the high cost of 2:1 replacement schedule for long-distance routes during summer or winter can be reduced. The proposed framework can help us evaluate and understand the feasibility of solar radiation-generated electricity energy of electric bus fleets covering the large-scale urban areas at different times, locations, and weather conditions, so as to support effective decisions at better planning of PV-integrated electric buses.
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| 7. |
- Chen, Y., et al.
(författare)
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Theory-guided hard constraint projection (HCP) : A knowledge-based data-driven scientific machine learning method
- 2021
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Ingår i: Journal of Computational Physics. - : Academic Press Inc.. - 0021-9991 .- 1090-2716. ; 445
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Tidskriftsartikel (refereegranskat)abstract
- Machine learning models have been successfully used in many scientific and engineering fields. However, it remains difficult for a model to simultaneously utilize domain knowledge and experimental observation data. The application of knowledge-based symbolic artificial intelligence (AI) represented by expert systems is limited by the expressive ability of the model, and data-driven connectionism AI represented by neural networks is prone to produce predictions that might violate physical principles. In order to fully integrate domain knowledge with observations and make full use of the strong fitting ability of neural networks, this study proposes theory-guided hard constraint projection (HCP). This deep learning model converts physical constraints, such as governing equations, into a form that is easy to handle through discretization, and then implements hard constraint optimization through projection in a patch. Based on rigorous mathematical proofs, theory-guided HCP can ensure that model predictions strictly conform to physical mechanisms in the constraint patch. The training process of theory-guided HCP only needs a small amount of labeled data (sparse observation), and it can supervise the model by combining the coordinates (label-free data) with domain knowledge. The performance of the theory-guided HCP is verified by experiments based on a published heterogeneous subsurface flow problem. The experiments show that theory-guided HCP requires fewer data, and achieves higher prediction accuracy and stronger robustness to noisy observations, than the fully connected neural networks and soft constraint models. Furthermore, due to the application of domain knowledge, theory-guided HCP possesses the ability to extrapolate and can accurately predict points outside of the range of the training dataset.
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| 8. |
- Qiu, R., et al.
(författare)
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A model-experience-driven method for the planning of refined product primary logistics
- 2022
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Ingår i: Chemical Engineering Science. - : Elsevier Ltd. - 0009-2509 .- 1873-4405. ; 254
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Tidskriftsartikel (refereegranskat)abstract
- Logistics planning is regarded as the most complex part of supply chain management for refined products. A vital knowledge gap still exists in understanding the trade-offs between the economy and the practicability of logistics schemes. Focus on this issue, this paper proposes a model-experience-driven method for the planning of refined product primary logistics. The method couples three sub-modules: (1) use coordinator's preference information and convex function interpolation to construct satisfaction indicator; (2) set up a multi-objective model for logistics coordination and optimization considering supply adjustment and secondary delivery; (3) adopt the augmented ɛ-constraint method to obtain the Pareto solutions and balance the economy and satisfaction indicators. The method is verified by a small-scale system, where the satisfaction degree increases by 77% while the logistics cost remains unchanged. The method is also successfully applied to a large-scale system with 29 refineries and 196 market depots, where Pareto logistics schemes are obtained and the supply–demand imbalance is greatly eased. The proposed method can help provide theoretical guidance for real-world logistics planning.
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| 9. |
- Wang, Xi, et al.
(författare)
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Self-Constructed Multiple Plasmonic Hotspots on an Individual Fractal to Amplify Broadband Hot Electron Generation
- 2021
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Ingår i: ACS Nano. - : American Chemical Society (ACS). - 1936-0851 .- 1936-086X. ; 15:6, s. 10553-10564
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Tidskriftsartikel (refereegranskat)abstract
- Plasmonic nanoparticles are ideal candidates for hot-electron-assisted applications, but their narrow resonance region and limited hotspot number hindered the energy utilization of broadband solar energy. Inspired by tree branches, we designed and chemically synthesized silver fractals, which enable self-constructed hotspots and multiple plasmonic resonances, extending the broadband generation of hot electrons for better matching with the solar radiation spectrum. We directly revealed the plasmonic origin, the spatial distribution, and the decay dynamics of hot electrons on the single-particle level by using ab initio simulation, dark-field spectroscopy, pump–probe measurements, and electron energy loss spectroscopy. Our results show that fractals with acute tips and narrow gaps can support broadband resonances (400–1100 nm) and a large number of randomly distributed hotspots, which can provide unpolarized enhanced near field and promote hot electron generation. As a proof-of-concept, hot-electron-triggered dimerization of p-nitropthiophenol and hydrogen production are investigated under various irradiations, and the promoted hot electron generation on fractals was confirmed with significantly improved efficiency.
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| 10. |
- Wei, X., et al.
(författare)
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Assessing benefits in the flexibility of refined oil logistics from pipeline network integration reform : A case from South China
- 2022
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Ingår i: Chemical Engineering Science. - : Elsevier Ltd. - 0009-2509 .- 1873-4405. ; 253
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Tidskriftsartikel (refereegranskat)abstract
- The pipeline network integration reform enables unified management of pipelines from different entities. For refined oil logistics, this paper proposes a framework based on the MILP optimization model to quantify its flexibility. Considering the uncertainty, three disturbances occur in the logistics concurrently, and 10,000 simulations are performed to obtain the turnover cost. The ratio of pipeline transportation cost to the calculated average turnover cost is defined as the flexibility indicator. Taking China's largest refined oil pipeline network as an example, the results show that the flexibility rises 8.9% after the reform. The paper also quantifies the impact of the reform on logistics flexibility in South China, which is embodied in achieving lower freights and GHG emissions, lower impact by fluctuations, higher pipeline utilization, more efficient oil product turnover, and the avoiding of depot shortages when facing logistical disturbances. The underlying reasons for the results and 3E analysis are analyzed.
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