| 1. |
- Asimakopoulou, Eleni Myrto, et al.
(författare)
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Development towards high-resolution kHz-speed rotation-free volumetric imaging
- 2024
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Ingår i: Optics Express. - 1094-4087. ; 32:3, s. 4413-4426
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Tidskriftsartikel (refereegranskat)abstract
- X-ray multi-projection imaging (XMPI) has the potential to provide rotation-free 3D movies of optically opaque samples. The absence of rotation enables superior imaging speed and preserves fragile sample dynamics by avoiding the centrifugal forces introduced by conventional rotary tomography. Here, we present our XMPI observations at the ID19 beamline (ESRF, France) of 3D dynamics in melted aluminum with 1000 frames per second and 8 µm resolution per projection using the full dynamical range of our detectors. Since XMPI is a method under development, we also provide different tests for the instrumentation of up to 3000 frames per second. As the high-brilliance of 4th generation light-sources becomes more available, XMPI is a promising technique for current and future X-ray imaging instruments.
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| 2. |
- Birnsteinova, Sarlota, et al.
(författare)
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Online dynamic flat-field correction for MHz microscopy data at European XFEL
- 2023
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Ingår i: Journal of Synchrotron Radiation. - 1600-5775. ; 30:6, s. 1030-1037
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Tidskriftsartikel (refereegranskat)abstract
- The high pulse intensity and repetition rate of the European X-ray Free-Electron Laser (EuXFEL) provide superior temporal resolution compared with other X-ray sources. In combination with MHz X-ray microscopy techniques, it offers a unique opportunity to achieve superior contrast and spatial resolution in applications demanding high temporal resolution. In both live visualization and offline data analysis for microscopy experiments, baseline normalization is essential for further processing steps such as phase retrieval and modal decomposition. In addition, access to normalized projections during data acquisition can play an important role in decision-making and improve the quality of the data. However, the stochastic nature of X-ray free-electron laser sources hinders the use of standard flat-field normalization methods during MHz X-ray microscopy experiments. Here, an online (i.e. near real-time) dynamic flat-field correction method based on principal component analysis of dynamically evolving flat-field images is presented. The method is used for the normalization of individual X-ray projections and has been implemented as a near real-time analysis tool at the Single Particles, Clusters, and Biomolecules and Serial Femtosecond Crystallography (SPB/SFX) instrument of EuXFEL.
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| 3. |
- Buakor, Khachiwan, et al.
(författare)
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Shot-to-shot flat-field correction at X-ray free-electron lasers
- 2022
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Ingår i: Optics Express. - 1094-4087. ; 30:7, s. 10633-10644
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Tidskriftsartikel (refereegranskat)abstract
- X-ray free-electron lasers (XFELs) provide high-brilliance pulses, which offer unique opportunities for coherent X-ray imaging techniques, such as in-line holography. One of the fundamental steps to process in-line holographic data is flat-field correction, which mitigates imaging artifacts and, in turn, enables phase reconstructions. However, conventional flat-field correction approaches cannot correct single XFEL pulses due to the stochastic nature of the self-amplified spontaneous emission (SASE), the mechanism responsible for the high brilliance of XFELs. Here, we demonstrate on simulated and megahertz imaging data, measured at the European XFEL, the possibility of overcoming such a limitation by using two different methods based on principal component analysis and deep learning. These methods retrieve flat-field corrected images from individual frames by separating the sample and flat-field signal contributions; thus, enabling advanced phase-retrieval reconstructions. We anticipate that the proposed methods can be implemented in a real-time processing pipeline, which will enable online data analysis and phase reconstructions of coherent full-field imaging techniques such as in-line holography at XFELs.
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| 4. |
- Guo, Rui, et al.
(författare)
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Deep-learning image enhancement and fibre segmentation from time-resolved computed tomography of fibre-reinforced composites
- 2023
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Ingår i: Composites Science and Technology. - 0266-3538. ; 244
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Tidskriftsartikel (refereegranskat)abstract
- Monitoring the microstructure and damage development of fibre-reinforced composites during loading is crucial to understanding their mechanical properties. Time-resolved X-ray computed tomography enables such an in-situ, non-destructive study. However, the photon flux and fibre-matrix contrast limit its achievable spatial and temporal resolution. In this paper, we push the limits of temporal and spatial resolution for the microstructural analysis of unidirectional continuous carbon fibre-reinforced epoxy composites by establishing a new pipeline based on CycleGAN for unsupervised super-resolution and denoising and U-Net-id for individual fibre segmentation. After illustrating the benefits of a 3D CycleGAN over a 2D one, we show that data enhanced by this pipeline can yield similar segmentation quality to that of a slow-acquisition, high-quality scan that took up to 200 times longer to acquire. This pipeline, therefore, enables more robust data extraction from fast time-resolved X-ray tomography, removing a critical stumbling block for this technique.
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| 5. |
- Hot, Dina, et al.
(författare)
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Spatially and temporally resolved IR-DFWM measurement of HCN released from gasification of biomass pellets
- 2019
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Ingår i: Proceedings of the Combustion Institute. - : Elsevier BV. - 1540-7489. ; 37:2, s. 1337-1344
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Tidskriftsartikel (refereegranskat)abstract
- For the first time, to the best of the authors' knowledge, nonintrusive quantitative measurement of hydrogen cyanide (HCN) released during the devolatilization phase of straw pellets gasification is demonstrated with high spatial and temporal resolution. Mid-infrared degenerate four-wave mixing (IR-DFWM) measurements of HCN were performed by probing the interference-free P(20) line in the v 1 vibrational band at around 3 μm and the IR-DFWM signal was detected with an upconversion-based detector, providing discrimination of thermal noise and increased sensitivity. A novel single-pellet setup consisting of a multi-jet burner was used to provide hot flue gas environments with an even and well-defined temperature distribution, for single straw pellet gasification at atmospheric pressure. The environments had temperatures of 1380 K, 1540 K and 1630 K with a constant oxygen concentration of 0.5 vol%. In order to quantify the amount of HCN released during the devolatilization of straw pellets, calibration measurements were performed in well-defined HCN gas flows. Selected hot water lines were probed with IR-DFWM in the interrogated volume to obtain the instantaneous temperature, which were used to correct the temperature effect. HCN concentrations up to 1500 ppm were detected during the devolatilization stage, and the results indicate a strong temperature dependence of the HCN release.
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| 6. |
- Hwang, Ouk, et al.
(författare)
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Development of novel ultrasonic temperature measurement technology for combustion gas as a potential indicator of combustion instability diagnostics
- 2019
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Ingår i: Applied Thermal Engineering. - : Elsevier BV. - 1359-4311. ; 159
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Tidskriftsartikel (refereegranskat)abstract
- In this study, a high-speed, fast responsive, non-intrusive ultrasonic thermometry system was proposed as a potential candidate for overcoming the disadvantages of thermocouples. The principle of this system is based on the thermal dependence of the speed of sound, and the temperature is measured by detecting the flight time of ultrasonic wave (USW) between the transmitter and the receiver. For a fast and exact measurement, the algorithm was developed as simple as possible, and the exact values of the physical properties, such as specific heat ratio and molecular weight of combustion gas, were taken from the computational calculation of CHEMKIN-Pro with GRI 3.0 mechanism. The performance of the system was verified by two experiments. First, the system was applied to measure the temperature of heated air. Results showed high precision with a 0.3% error when incorporating a modification equation and fast responsive dynamic performance, which directly reflect the rapid temperature change. Second, the combustion gas temperature above a multi-jet burner, which provides a horizontally uniform temperature distribution similar to a flat flame burner, was measured. Five different flame temperatures were measured using a thermocouple and an optic-based measurement method based on two-line atomic fluorescence (TLAF) as well as ultrasonic thermometry to compare their performances. Ultrasonic thermometry showed a slightly lower accuracy than those of TLAF and the thermocouple. This condition could be overcome by correcting the results using linear fitting, as the temperature measured by USW showed the best linearity among them. The USW technique showed excellent performance in terms of the measurement speed of 1000 samples/s and uncertainty under 0.73%. This USW thermometry of combustion gas can be applied to many combustion systems, including boilers and gas turbines. Specifically, fast temperature measurement at a speed of around 1 kHz enables the diagnosis of the combustion instability phenomenon, which is a difficult task when using conventional methods of temperature measurement. Furthermore, both dynamic pressure and temperature can be simultaneously measured at a high rate, thus synergistically increasing the accuracy of combustion instability diagnosis with sufficient information, such as the Rayleigh index or the flame transfer function.
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| 7. |
- Kalbfleisch, Sebastian, et al.
(författare)
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X-ray in-line holography and holotomography at the NanoMAX beamline
- 2022
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Ingår i: Journal of Synchrotron Radiation. - : International Union of Crystallography (IUCr). - 0909-0495 .- 1600-5775. ; 29, s. 224-229
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Tidskriftsartikel (refereegranskat)abstract
- Coherent X-ray imaging techniques, such as in-line holography, exploit the high brilliance provided by diffraction-limited storage rings to perform imaging sensitive to the electron density through contrast due to the phase shift, rather than conventional attenuation contrast. Thus, coherent X-ray imaging techniques enable high-sensitivity and low-dose imaging, especially for low-atomic-number (Z) chemical elements and materials with similar attenuation contrast. Here, the first implementation of in-line holography at the NanoMAX beamline is presented, which benefits from the exceptional focusing capabilities and the high brilliance provided by MAX IV, the first operational diffractionlimited storage ring up to approximately 300 eV. It is demonstrated that in-line holography at NanoMAX can provide 2D diffraction-limited images, where the achievable resolution is only limited by the 70 nm focal spot at 13 keV X-ray energy. Also, the 3D capabilities of this instrument are demonstrated by performing holotomography on a chalk sample at a mesoscale resolution of around 155 nm. It is foreseen that in-line holography will broaden the spectra of capabilities of MAX IV by providing fast 2D and 3D electron density images from mesoscale down to nanoscale resolution.
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| 8. |
- Langer, Max, et al.
(författare)
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PyPhase - A Python package for X-ray phase imaging
- 2021
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Ingår i: Journal of Synchrotron Radiation. - 0909-0495. ; 28, s. 1261-1266
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Tidskriftsartikel (refereegranskat)abstract
- X-ray propagation-based imaging techniques are well established at synchrotron radiation and laboratory sources. However, most reconstruction algorithms for such image modalities, also known as phase-retrieval algorithms, have been developed specifically for one instrument by and for experts, making the development and diffusion of such techniques difficult. Here, PyPhase, a free and open-source package for propagation-based near-field phase reconstructions, which is distributed under the CeCILL license, is presented. PyPhase implements some of the most popular phase-retrieval algorithms in a highly modular framework supporting its deployment on large-scale computing facilities. This makes the integration, the development of new phase-retrieval algorithms, and the deployment on different computing infrastructures straightforward. Its capabilities and simplicity are presented by application to data acquired at the synchrotron source MAX IV (Lund, Sweden).
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| 9. |
- Lu, Yichun, et al.
(författare)
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Suspended solids-associated toxicity of hydraulic fracturing flowback and produced water on early life stages of zebrafish (Danio rerio)
- 2021
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Ingår i: Environmental Pollution. - : Elsevier BV. - 0269-7491 .- 1873-6424. ; 287
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Tidskriftsartikel (refereegranskat)abstract
- Hydraulic fracturing flowback and produced water (HF-FPW), which contains polyaromatic hydrocarbons (PAHs) and numerous other potential contaminants, is a complex wastewater produced during the recovery of tight hydrocarbon resources. Previous studies on HF-FPW have demonstrated various toxicological responses of aquatic organisms as consequences of combined exposure to high salinity, dissolved organic compounds and particle/suspended solids-bound pollutants. Noteworthy is the lack of studies illustrating the potentially toxic effects of the FPW suspended solids (FPW-SS). In this study, we investigated the acute and sublethal toxicity of suspended solids filtered from six authentic FPW sample collected from two fracturing wells, using a sediment contact assay based on early-life stages of zebrafish (Danio rerio). PAHs profiles and acute toxicity tests provided initial information on the toxic potency of the six samples. Upon exposure to sediment mixture at two selected doses (1.6 and 3.1 mg/mL), results showed adverse effects in larval zebrafish, as revealed by increased Ethoxyresorufin-O-deethylase (EROD) activity. Transcriptional alterations were also observed in xenobiotic biotransformation (ahr, pxr, cyp1a, cyp1b1, cyp1c1, cyp1c2, cyp3a65, udpgt1a1, udpgt5g1), antioxidant response (sod1, sod2, gpx1a, gpx1b) and hormone receptor signaling (esr1, esr2a, cyp19a1a, vtg1) genes. The results demonstrated that even separated from the complex aqueous FPW mixture, FPW-SS can induce toxicological responses in aquatic organisms' early life stages. Since FPW-SS could sediment to the bottom of natural wetland acting as a continuous source of contaminants, the current findings imply the likelihood of long-term environmental risks of polluted sediments on aquatic ecosystems due to FPW spills.
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| 10. |
- Ren, Hui, et al.
(författare)
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The crystal structure of human adenylate kinase 6 : An adenylate kinase localized to the cell nucleus
- 2005
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Ingår i: Proceedings of the National Academy of Sciences. - : Proceedings of the National Academy of Sciences. - 0027-8424 .- 1091-6490. ; 102:2, s. 8-303
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Tidskriftsartikel (refereegranskat)abstract
- Adenylate kinases (AKs) play important roles in nucleotide metabolism in all organisms and in cellular energetics by means of phosphotransfer networks in eukaryotes. The crystal structure of a human AK named AK6 was determined by in-house sulfur single-wavelength anomalous dispersion phasing methods and refined to 2.0-A resolution with a free R factor of 21.8%. Sequence analyses revealed that human AK6 belongs to a distinct subfamily of AKs present in all eukaryotic organisms sequenced so far. Enzymatic assays show that human AK6 has properties similar with other AKs, particularly with AK5. Fluorescence microscopy showed that human AK6 is localized predominantly to the nucleus of HeLa cells. The identification of a nuclear-localized AK sheds light on nucleotide metabolism in the nucleus and the energetic communication between mitochondria and nucleus by means of phosphotransfer networks.
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