| 1. |
- Abalaka, Jacinta, et al.
(författare)
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Genetic diversity and population structure of the range restricted rock firefinch Lagonosticta sanguinodorsalis
- 2015
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Ingår i: Conservation Genetics. - : Springer Science and Business Media LLC. - 1566-0621 .- 1572-9737. ; 16:2, s. 411-418
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Tidskriftsartikel (refereegranskat)abstract
- Understanding the degree of genetic population differentiation is important in conservation genetics for inferring gene flow between populations and for identifying small and isolated threatened populations. We evaluated the genetic variation within and between three populations of the rock firefinch (Lagonosticta sanguinodorsalis), a range restricted firefinch endemic to Nigeria and Cameroon. The populations were closely located (c. 100 km apart) within the species' core distribution in Central Nigeria. We found that the populations had similar levels of gene diversities (H (E) ) and low but significant inbreeding coefficients (F (IS) ). Despite the short distance between populations there was a weak but significant population structure, which indicates that the populations are somewhat isolated and affected by drift within the species' core distribution in Nigeria. The knowledge of the genetic status of the rock firefinch will serve as a foundation to future studies to help understand population demography and for managing and maintaining viable populations.
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| 2. |
- Andersson, Anastasia, et al.
(författare)
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Complex genetic diversity patterns of cryptic, sympatric brown trout (Salmo trutta) populations in tiny mountain lakes
- 2017
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Ingår i: Conservation Genetics. - : Springer Science and Business Media LLC. - 1566-0621 .- 1572-9737. ; 18:5, s. 1213-1227
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Tidskriftsartikel (refereegranskat)abstract
- Intraspecific genetic variation can have similar effects as species diversity on ecosystem function; understanding such variation is important, particularly for ecological key species. The brown trout plays central roles in many northern freshwater ecosystems, and several cases of sympatric brown trout populations have been detected in freshwater lakes based on apparent morphological differences. In some rare cases, sympatric, genetically distinct populations lacking visible phenotypic differences have been detected based on genetic data alone. Detecting such cryptic sympatric populations without prior grouping of individuals based on phenotypic characteristics is more difficult statistically, though. The aim of the present study is to delineate the spatial connectivity of two cryptic, sympatric genetic clusters of brown trout discovered in two interconnected, tiny subarctic Swedish lakes. The structures were detected using allozyme markers, and have been monitored over time. Here, we confirm their existence for almost three decades and report that these cryptic, sympatric populations exhibit very different connectivity patterns to brown trout of nearby lakes. One of the clusters is relatively isolated while the other one shows high genetic similarity to downstream populations. There are indications of different spawning sites as reflected in genetic structuring among parr from different creeks. We used > 3000 SNPs on a subsample and find that the SNPs largely confirm the allozyme pattern but give considerably lower F (ST) values, and potentially indicate further structuring within populations. This type of complex genetic substructuring over microgeographical scales might be more common than anticipated and needs to be considered in conservation management.
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| 3. |
- Andreasen, Katarina
(författare)
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Implications of molecular systematic analyses on the conservation of rare and threatened taxa : contrasting examples from Malvaceae
- 2005
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Ingår i: Conservation Genetics. - : Springer Science and Business Media LLC. - 1566-0621 .- 1572-9737. ; 6:3, s. 399-412
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Tidskriftsartikel (refereegranskat)abstract
- Systematic research provides essential evidence for setting conservation priorities for rare and endangered taxa. Phylogenetic analyses can identify cryptic, genetically distinct lineages as well as actively interbreeding, and hence, non-distinctive lineages earlier perceived as separate taxa. A major aim of this study was to identify genetically distinct, rare lineages within two Malvaceae sister-genera, Sidalcea and Eremalche. The focus was two taxon-pairs each consisting of one rare and one more common taxon. The results demonstrate that even within two closely related genera, with a large number of rare taxa, molecular phylogenetic analyses can reveal contrasting degrees of evolutionary divergence and thus contrasting conservation implications for threatened taxa. Contrary to expectations, the substitution rate in the nuclear ribosomal transcribed spacers for annualEremalche did not correspond to the faster evolutionary rate of annuals – compared to perennials – detected earlier within Sidalcea. Branch lengths in the (annual) Eremalche clade were shorter than those of annual members of Sidalcea. The phylogenetic analyses showed that the rare and endangered S. keckii and E. kernensis each are most closely related to a common species that has been regarded as insufficiently distinct to warrant separate taxonomic status. An additional aim of the study was to test the utility of the Phylogenetic Diversity (PD) measure to formalize the procedure of prioritizing conservation efforts. The measure demonstrated S. keckii (but not E. kernensis) to be genetically distinct from its closest relative and a good candidate for conservation. The PD measure was earlier used for assessing conservation priorities for areas, but proved useful to more objectively suggest conservation priorities among threatened taxa. Because this measure is calculated directly from the data, it retains more character information and gives a better representation of genetic diversity than other measures relying on tree topologies.
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| 4. |
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| 5. |
- Arrendal, Johanna, et al.
(författare)
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Reliability of noninvasive genetic census of otters compared to field censuses
- 2007
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Ingår i: Conservation Genetics. - : Springer Science and Business Media LLC. - 1566-0621 .- 1572-9737. ; 8:5, s. 1097-1107
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Tidskriftsartikel (refereegranskat)abstract
- Conservation and management actions are often highly dependent on accurate estimations of population sizes. However, these estimates are difficult to obtain for elusive and rare species. We compared two census methods for Eurasian otter: snow tracking and noninvasive genetic census based on the genotyping of faecal samples. With the noninvasive genetic census we detected the presence of almost twice as many otters as with snow tracking (23 and 10–15, respectively), and mark-recapture estimates based on the genetic census indicated that the real number of otters could be even higher. Our results indicate that snow tracking tends to underestimate the number of individuals and also that it is more susceptible to subjective assessment. We compared the strengths and weaknesses of the two methods.
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| 6. |
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| 7. |
- Bererhi, Badreddine, et al.
(författare)
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Inconsistent inbreeding effects during lizard ontogeny
- 2019
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Ingår i: Conservation Genetics. - : Springer Science and Business Media LLC. - 1566-0621 .- 1572-9737. ; 20:4, s. 865-874
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Tidskriftsartikel (refereegranskat)abstract
- Reported effects of inbreeding vary among taxa and may depend on a number of factors, including what trait is measured, temporal variability, parental effects, or life history stage. To understand the effects of inbreeding during early life history stages, we estimated the effects of individual-level heterozygosity on hatching success and first year survival in a Swedish population of sand lizards (Lacerta agilis) over a period of almost a decade, using over 4000 eggs, 400 clutches, and over 3000 juveniles. Heterozygosity had a positive effect on hatching success, in standardized laboratory conditions, but no effect on first year survival. Also, both of these measures of viability varied across the years of the study, demonstrating the importance of temporal heterogeneity in pre and post-hatching conditions. Finally, we identified both paternal and maternal identity effects on hatching success. Thus, we show that selection on heterozygosity was not consistent across developmental life stages, emphasizing the need of considering a number of ontogenic stages, as well as potential parental and environmental effects, when studying the effects of heterozygosity on viability in natural populations.
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| 8. |
- Besnier, Francois, et al.
(författare)
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Applying QTL analysis to conservation genetics
- 2010
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Ingår i: Conservation Genetics. - : Springer Science and Business Media LLC. - 1566-0621 .- 1572-9737. ; 11, s. 399-408
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Tidskriftsartikel (refereegranskat)abstract
- Both analytical and molecular tools currently exist that can be used to prolifically apply quantitative trait loci (QTL) analysis to the study of natural populations. In this communication, we review and exemplify the use of QTL mapping tools and genetic modeling for conservation geneticists. We simulate populations inspired by relevant cases that can be encountered in the field and analyze them using the recently developed flexible intercross analysis (FIA) method. We then reanalyze these results with the also recently developed natural and orthogonal interactions (NOIA) model of genetic effects. Next, we further exemplify the potential of genetic modeling for the interpretation of the output of QTL analyses by reviewing studies on hybrids between wild individuals and their domesticated relatives. Based on the results here presented we emphasize several points that are pertinent in conservation genetics including (i) the advantages of FIA as a powerful tool to be applied to line crosses in which the parental lines are not inbred, (ii) the importance of obtaining estimates of genetic effects that are adequate to address the research issue under consideration, (iii) the versatility of genetic modeling, particularly NOIA, to dissect complex genetic architectures and (iv) the possibility of using currently available methods to address non-equilibrium multiallelic systems.
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| 9. |
- Björnerfeldt, Susanne, et al.
(författare)
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Evaluation of methods for single hair DNA amplification
- 2007
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Ingår i: Conservation Genetics. - : Springer Science and Business Media LLC. - 1566-0621 .- 1572-9737. ; 8:4, s. 977-981
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Tidskriftsartikel (refereegranskat)abstract
- Because of the low amount of DNA in single hairs, it may be difficult to obtain reliable genotypes for forensic and conservation genetics studies. We therefore compared different methods for reliably genotyping single hair samples. Our results indicate that preliminary whole genome amplification can increase the likelihood of successfully genotyping a single hair compared to other commonly used protocols. The difference between the methods is small for single locus comparisons, but it becomes more important in multi-locus comparisons. The economic and time costs of the whole genome amplification may prevent its large-scale use in non-invasive monitoring programs. Nevertheless, it may be a very useful approach for the analysis of especially valuable samples.
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| 10. |
- Bodare, Sofia, et al.
(författare)
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Fine- and local- scale genetic structure of Dysoxylum malabaricum, a late-successional canopy tree species in disturbed forest patches in the Western Ghats, India
- 2017
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Ingår i: Conservation Genetics. - : SPRINGER. - 1566-0621 .- 1572-9737. ; 18:1, s. 1-15
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Tidskriftsartikel (refereegranskat)abstract
- Dysoxylum malabaricum (white cedar) is an economically important tree species, endemic to the Western Ghats, India, which is the world's most densely populated biodiversity hotspot. In this study, we used variation at ten nuclear simple sequence repeat loci to investigate genetic diversity and fine scale spatial genetic structure (FSGS) in seedlings and adults of D. malabaricum from four forest patches in the northern part of the Western Ghats. When genetic variation was compared between seedlings and adults across locations, significant differences were detected in allelic richness, observed heterozygosity, fixation index (F (IS)), and relatedness (P < 0.05). Reduced genetic diversity and increased relatedness at the seedling stage might be due to fragmentation and disturbance. There was no FSGS at the adult stage and FSGS was limited to shorter distance classes at the seedling stage. However, there was clear spatial genetic structure at the landscape level (< 50 km), regardless of age class, due to limited gene flow between forest patches. A comparison of the distributions of size classes in the four locations with published data from a more southern area, showed that large trees (diameter at breast height, DBH, > 130 cm) are present in the southern sacred forests but not in the northern forest reserves. This pattern is likely due to stronger harvesting pressure in the north compared to the south, because in the north there are no cultural taboos regulating the extraction of natural resources. The implications for forest conservation in this biodiversity hotspot are discussed.
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| 11. |
- Breed, Martin F., 1981-, et al.
(författare)
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Which provenance and where? : Seed sourcing strategies for revegetation in a changing environment
- 2013
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Ingår i: Conservation Genetics. - : Springer Science and Business Media LLC. - 1566-0621 .- 1572-9737. ; 14:1, s. 1-10
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Forskningsöversikt (refereegranskat)abstract
- Revegetation is one practical application of science that should ideally aim to combine ecology with evolution to maximise biodiversity and ecosystem outcomes. The strict use of locally sourced seed in revegetation programs is widespread and is based on the expectation that populations are locally adapted. This practice does not fully integrate two global drivers of ecosystem change and biodiversity loss: habitat fragmentation and climate change. Here, we suggest amendments to existing strategies combined with a review of alternative seed-sourcing strategies that propose to mitigate against these drivers. We present a provenancing selection guide based on confidence surrounding climate change distribution modelling and data on population genetic and/or environmental differences between populations. Revegetation practices will benefit from greater integration of current scientific developments and establishment of more long-term experiments is key to improving the long-term success. The rapid growth in carbon and biodiversity markets creates a favourable economic climate to achieve these outcomes.
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| 12. |
- Dalen, L, et al.
(författare)
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Identifying species from pieces of faeces
- 2004
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Ingår i: Conservation Genetics. - DORDRECHT : KLUWER ACADEMIC PUBL. - 1566-0621 .- 1572-9737. ; 5:1, s. 109-111
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Tidskriftsartikel (refereegranskat)
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| 13. |
- Demandt, Marnie H.
(författare)
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Temporal changes in genetic diversity of isolated populations of perch and roach
- 2010
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Ingår i: Conservation Genetics. - : Springer Science and Business Media LLC. - 1566-0621 .- 1572-9737. ; 11:1, s. 249-255
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Tidskriftsartikel (refereegranskat)abstract
- Genetic drift, together with natural selection and gene flow, affects genetic variation and is the major source of changes in allele frequencies in small and isolated populations. Temporal shifts in allele frequencies at five polymorphic loci were used to estimate the amount of genetic drift in an isolated population of perch (Perca fluviatilis L.) and roach (Rutilus rutilus L.). Here, I used the populations from the Biotest basin at Forsmark, Sweden, to investigate genetic diversity between 1977 and 2000, during which time the population can be considered to be totally isolated from other populations. Microsatellite data reveal stable levels of gene diversity over time for both species. Estimates of genetic differentiation (F-ST) showed a significant divergence between 1977 and 2000 for both perch and roach. A positive correlation between genetic distance and time was found (Mantel test, perch: r = 0.724, P = 0.0112; roach: r = 0.59, P = 0.036). Estimates of effective population size (N-e) differed with a factor six between two different estimators (NeEstimator and TempoFS) applying the temporal method. Ratios of Ne/N ranged between 10(-2) and 10(-3), values normally found in marine species. Despite low Ne the populations have not lost their evolutionary potential due to drift. But two decades of isolation have lead to isolation by time for populations of perch and roach, respectively.
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| 14. |
- Gardeström, J., et al.
(författare)
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Characterization of six microsatellite loci in the Baltic blue mussel Mytilus trossulus and cross-species amplification in North Sea Mytilus edulis
- 2008
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Ingår i: Conservation Genetics. - : Springer Science and Business Media LLC. - 1566-0621 .- 1572-9737. ; 9:4, s. 1003-1005
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Tidskriftsartikel (refereegranskat)abstract
- The blue mussel Mytilus trossulus occurs in the Pacific and in the North Atlantic. We developed and characterized six microsatellite loci for Baltic M. trossulus. Seventeen microsatellite loci were screened, of which six were polymorphic. The number of alleles among 50 individuals ranged from 3 to 13 and the observed and expected heterozygosity were 0.09-0.46 and 0.34-0.86, respectively. The loci were also tested for cross amplification in M. edulis, in which four of the six microsatellite loci were successfully amplified.
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| 15. |
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| 16. |
- Graves, JA, et al.
(författare)
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Microsatellite and mtDNA analysis of the population structure of grey seals (Halichoerus grypus) from three breeding areas in the Baltic Sea
- 2009
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Ingår i: Conservation Genetics. - : Springer Science and Business Media LLC. - 1566-0621 .- 1572-9737. ; 10, s. 59-68
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Tidskriftsartikel (refereegranskat)abstract
- The growing number of grey seals in the Baltic Sea has led to a dramatic increase in interactions between seals and fisheries. The conflict has become such a problem that hunting was introduced in Finland in 1998 and the Swedish Environment Protection Agency recommended a cull of grey seals starting in 2001. Culling has been implemented despite the lack of data on population structure. Low levels of migration between regions would mean that intensive culling in specific geographic areas would have disproportionate effects on local population structure and genetic diversity. We used eight microsatellite loci and a 489 bp section of the mtDNA control region to examine the genetic variability and differentiation between three breeding sites in the Baltic Sea and two in the UK. We found high levels of genetic variability in all sampled Baltic groups for both the microsatellites and the control region. There were highly significant differences in microsatellite allele frequencies between all three Baltic breeding sites and between the Baltic sites and the UK sites. However, there were no significant differences in mtDNA control region haplotypes between the Baltic sites. This genetic substructure of the Baltic grey seal populations should be taken into consideration when managing the seal population to prevent the hunting regime from having an adverse effect on genetic diversity by setting hunting quotas separately for the different subpopulations.
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| 17. |
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| 18. |
- Hansson, Bengt, et al.
(författare)
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Heterozygosity-fitness correlations within inbreeding classes : Local or genome-wide effects?
- 2008
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Ingår i: Conservation Genetics. - : Springer Science and Business Media LLC. - 1566-0621 .- 1572-9737. ; 9:1, s. 73-83
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Tidskriftsartikel (refereegranskat)abstract
- Marker-based studies of inbreeding may lead to an enhanced understanding of inbreeding depression in natural populations, which is a major concern in conservation genetics. Correlations between marker heterozygosity and variation in fitness-associated traits-'heterozygosity-fitness correlations' (HFCs)-are of particular importance and have been widely applied in natural populations. In partially inbred populations, HFCs can be driven by selection against inbred individuals and thus reflect inbreeding depression. However, other explanations for HFCs also exist, such as functional effects of the markers per se or that the markers reveal selection on linked fitness genes due to extended linkage disequilibrium (LD) in the population. Accordingly, HFCs do not only arise in partially inbred populations, they may also occur within inbreeding classes such as families, i.e. in situations when there is no variation in the inbreeding coefficient. In this study we focus on the importance of LD for within-family HFCs, thereby aiming at enhancing our general understanding of HFCs. For non-coding markers, within-family HFCs have been proposed to be caused in two ways: either by 'local effects' at linked fitness genes in LD with the markers, or by 'general effects' due to a correlation between proportion of heterozygous markers (H M ) and heterozygosity at genome-wide distributed fitness genes (H GW ). To evaluate these contrasting hypotheses for within-family HFCs, we analysed simulated data sets of sexually reproducing populations with varying levels of LD. The results confirmed that segregation induces variation in both H M and H GW at a fixed level of inbreeding, as expected, the variation in H M declined with increasing number of markers, whereas the variation in H GW declined with decreasing LD. However, less intuitively, there was no positive correlation between the variation in H M and H GW within inbreeding classes when the local component of H GW was accounted for (i.e. when the part of the chromosome in LD with the markers was excluded). This strongly suggests that within-family HFCs are not caused by general effects. Instead, our results support the idea that HFCs at a known level of inbreeding can be driven by local effects in populations with high to moderate LD. Note however that we define the local component of H GW as the part of the chromosomes in LD with the markers. This implies that when LD is high, the local component will consist of a substantial part of the genome and thus provides a rather 'genome-wide' view. We caution against routinely interpreting positive HFCs as evidence of inbreeding depression and non-significant HFCs as lack thereof, especially when few markers are used. © 2007 Springer Science+Business Media, Inc.
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| 19. |
- Hansson, Bengt
(författare)
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Marker-based relatedness predicts egg-hatching failure in great reed warblers
- 2004
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Ingår i: Conservation Genetics. - 1566-0621. ; 5:3, s. 339-348
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Tidskriftsartikel (refereegranskat)abstract
- I examine the relationship between reproductive success and marker-based relatedness (MBR; inferred from variation at 21 microsatellite loci) of pair-mates in a semi-isolated population of great reed warblers (Acrocephalus arundinaceus) over a 12 year period. There was a negative relationship between egg-hatching success and MBR, but no association between MBR and three other components of fitness (clutch size, proportion of fledglings and recruits). The relationship between hatchability and MBR was non-linear, with high hatching rates at low and intermediate levels of MBR and a sudden decline in hatching success among the small number of pairs with high MBR (<4% of the sample). It is likely that the decrease in fitness at high MBR was due to effects of homozygosity at genome-wide distributed loci, as opposed to effects of fitness loci in the local chromosomal vicinity of particular markers. This conclusion relies on the fact that similar results were found in another study of the same population that was based on DNA-fingerprinting band-sharing, and that there was a strong correlation between MBR and pedigree-based relatedness. The negative relationship between MBR and hatchability was especially pronounced in the first study years and levelled off in later years. This time-dependent effect of MBR on hatchability was not caused by a simultaneous temporal decrease in MBR, and may instead reflect the importance of other processes such as genotype x environment interactions or purging of deleterious recessive alleles.
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| 20. |
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| 21. |
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| 22. |
- Hedmark, Eva, et al.
(författare)
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DNA-based monitoring of two newly founded Scandinavian wolverine populations
- 2007
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Ingår i: Conservation Genetics. - : Springer Science and Business Media LLC. - 1566-0621 .- 1572-9737. ; 8:4, s. 843-852
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Tidskriftsartikel (refereegranskat)abstract
- The wolverine is an endangered carnivore that in northwestern Europe is restricted to the mountain range along the border between Sweden and Norway. The Scandinavian wolverine population experienced a severe decline in numbers due to human persecution during the 20th century, although with legislative protection the population has recently implied that the population slowly has started to recover (current population size estimate of 800 individuals). In the mid 1990s, wolverines appeared in two new and isolated areas east of the mountain range, in the forest landscape close to the Gulf of Bothnia. Using non-invasive, DNA-based monitoring, we show here that these new subpopulations were likely founded by as few as 2 and 2-4 individuals, respectively, and that little, if any, genetic contact with the main population since colonisation has been established. A high degree of genetic similarity among individuals in the two areas indicates inbreeding. We estimate the minimum number of wolverines known to be alive in these areas during the period of 2001-2005 to 5 and 17, respectively, with one subpopulation showing decreasing (currently 2) numbers and the other increasing (10). For the somewhat larger population, we infer a tentative pedigree from relatedness values and parentage tests, which indicates the occurrence of brother-sister matings. This study illustrates the usefulness of non-invasive monitoring in the management of endangered carnivore populations.
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| 23. |
- Hefti-Gautschi, Barbara, et al.
(författare)
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Identification of conservation units in the European Mergus merganser based on nuclear and mitochondrial DNA markers
- 2009
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Ingår i: Conservation Genetics. - : Springer Science and Business Media LLC. - 1566-0621 .- 1572-9737. ; 10:1, s. 87-99
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Tidskriftsartikel (refereegranskat)abstract
- The conservation status of small breeding areas of the Goosander (Mergus merganser merganser) in Central Europe is unclear. Geographic isolation of these areas suggests restricted gene flow to and from large North-European populations. On the other hand, migrating Goosanders from northern Europe join the Central European breeding population for wintering. To evaluate the conservation status of the small breeding areas we assessed the genetic structure of M. merganser populations in Europe by examining two nuclear marker systems (microsatellites and Single Nucleotide Polymorphisms, SNP) and mitochondrial (mtDNA) control region sequence variation for Goosanders in 11 sampling areas representing three of five distinct breeding areas and two subspecies (M. m. merganser and M. m. americanus). Overall population differentiation estimates including both subspecies were high, both based on mtDNA (Phi(ST) = 0.899; P < 0.0001) and nuclear markers (theta(ST) = 0.219; 95% CI 0.088-0.398, SNP and microsatellites combined). Within Europe, mtDNA revealed a strong overall (Phi(ST) = 0.426; P < 0.0001) and significant pairwise population differentiation between almost all comparisons. In contrast, both nuclear marker systems combined revealed only a small overall genetic differentiation (theta(ST) = 0.022; 95% CI 0.003-0.041). The strong genetic differentiation based on female-inherited mtDNA but not on biparentally inherited nuclear markers can be explained by sex-biased dispersal and strong female philopatry. Therefore, small breeding areas in Europe are endangered despite large male-mediated gene-flow, because when these populations decline, only males-but due to strong philopatry not females-can be efficiently supplemented by migration from the large North European populations. We therefore propose to manage the small breeding areas independently and to strengthen conservation efforts for this species in Central Europe.
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| 24. |
- Hoban, Sean, et al.
(författare)
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Genetic diversity goals and targets have improved, but remain insufficient for clear implementation of the post-2020 global biodiversity framework
- 2023
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Ingår i: Conservation Genetics. - : Springer Science and Business Media LLC. - 1566-0621 .- 1572-9737. ; 24:2, s. 181-191
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Tidskriftsartikel (refereegranskat)abstract
- Genetic diversity among and within populations of all species is necessary for people and nature to survive and thrive in a changing world. Over the past three years, commitments for conserving genetic diversity have become more ambitious and specific under the Convention on Biological Diversity’s (CBD) draft post-2020 global biodiversity framework (GBF). This Perspective article comments on how goals and targets of the GBF have evolved, the improvements that are still needed, lessons learned from this process, and connections between goals and targets and the actions and reporting that will be needed to maintain, protect, manage and monitor genetic diversity. It is possible and necessary that the GBF strives to maintain genetic diversity within and among populations of all species, to restore genetic connectivity, and to develop national genetic conservation strategies, and to report on these using proposed, feasible indicators.
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| 25. |
- Hudson, Alan G., et al.
(författare)
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Population structure, inbreeding and local adaptation within an endangered riverine specialist : the nase (Chondrostoma nasus)
- 2014
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Ingår i: Conservation Genetics. - : Springer Science+Business Media B.V.. - 1566-0621 .- 1572-9737. ; 15:4, s. 933-951
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Tidskriftsartikel (refereegranskat)abstract
- Chondrostoma nasus is a cyprinid fish with highly specialized, ecologically and geographically distinct, ontogenetic trophic niches. Nase population numbers across their Swiss range have shown massive declines and many localized extinctions. In this study, we integrate genetic data (AFLP, microsatellite, mtDNA sequence) with phenotypic and demographic analyses to survey patterns of neutral and adaptive genetic diversity in all extant (and one extinct) Swiss nase populations, with the aim to delineate intraspecific conservation units (CUs) and to inform future population management strategies. We discovered two major genetically and geographically distinct population groupings. The first population grouping comprises nase inhabiting rivers flowing into Lake Constance; the second comprises nase populations from Rhine drainages below Lake Constance. Within these clusters there is generally limited genetic differentiation among populations. Genomic outlier scans based on 256 to 377 polymorphic AFLP loci revealed little evidence of local adaptation both within and among population clusters, with the exception of one candidate locus identified in scans involving the low genetic diversity Schanzengraben population. However, significant phenotypic differentiation in body shape between certain populations suggests a need for more intensive future studies of local adaptation. Our data strongly suggests that the two major population groups should be treated as distinct CUs, with any supplemental stocking and reintroductions sourced only from within the range of the CU concerned.
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