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1.	Abraham, Vojtech, et al. (författare) Patterns in recent and Holocene pollen accumulation rates across Europe - the Pollen Monitoring Programme Database as a tool for vegetation reconstruction 2021 Ingår i: Biogeosciences. - : Copernicus GmbH. - 1726-4170 .- 1726-4189. ; 18:15, s. 4511-4534 Tidskriftsartikel (refereegranskat)abstract The collection of modern, spatially extensive pollen data is important for the interpretation of fossil pollen assemblages and the reconstruction of past vegetation communities in space and time. Modern datasets are readily available for percentage data but lacking for pollen accumulation rates (PARs). Filling this gap has been the motivation of the pollen monitoring network, whose contributors monitored pollen deposition in modified Tauber traps for several years or decades across Europe. Here we present this monitoring dataset consisting of 351 trap locations with a total of 2742 annual samples covering the period from 1981 to 2017. This dataset shows that total PAR is influenced by forest cover and climate parameters, which determine pollen productivity and correlate with latitude. Treeless vegetation produced PAR values of at least 140 grains cm(-2) yr(-1). Tree PAR increased by at least 400 grains cm(-2) yr(-1) with each 10% increase in forest cover. Pollen traps situated beyond 200 km of the distribution of a given tree species still collect occasional pollen grains of that species. The threshold of this long-distance transport differs for individual species and is generally below 60 grains cm(-2) yr(-1). Comparisons between modern and fossil PAR from the same regions show similar values. For temperate taxa, modern analogues for fossil PARs are generally found downslope or southward of the fossil sites. While we do not find modern situations comparable to fossil PAR values of some taxa (e.g. Corylus), CO2 fertilization and land use may cause high modern PARs that are not documented in the fossil record. The modern data are now publicly available in the Neotoma Paleoecology Database and aid interpretations of fossil PAR data.
2.	Akselsson, Cecilia, et al. (författare) Weathering rates in Swedish forest soils 2019 Ingår i: Biogeosciences. - : Copernicus GmbH. - 1726-4170 .- 1726-4189. ; 16:22, s. 4429-4450 Forskningsöversikt (refereegranskat)abstract Soil and water acidification was internationally recognised as a severe environmental problem in the late 1960s. The interest in establishing “critical loads” led to a peak in weathering research in the 1980s and 1990s, since base cation weathering is the long-term counterbalance to acidification pressure. Assessments of weathering rates and associated uncertainties have recently become an area of renewed research interest, this time due to demand for forest residues to provide renewable bioenergy. Increased demand for forest fuels increases the risk of depleting the soils of base cations produced in situ by weathering. This is the background to the research programme Quantifying Weathering Rates for Sustainable Forestry (QWARTS), which ran from 2012 to 2019. The programme involved research groups working at different scales, from laboratory experiments to modelling. The aims of this study were to (1) investigate the variation in published weathering rates of base cations from different approaches in Sweden, with consideration of the key uncertainties for each method; (2) assess the robustness of the results in relation to sustainable forestry; and (3) discuss the results in relation to new insights from the QWARTS programme and propose ways to further reduce uncertainties. In the study we found that the variation in estimated weathering rates at single-site level was large, but still most sites could be placed reliably in broader classes of weathering rates. At the regional level, the results from the different approaches were in general agreement. Comparisons with base cation losses after stem-only and whole-tree harvesting showed sites where whole-tree harvesting was clearly not sustainable and other sites where variation in weathering rates from different approaches obscured the overall balance. Clear imbalances appeared mainly after whole-tree harvesting in spruce forests in southern and central Sweden. Based on the research findings in the QWARTS programme, it was concluded that the PROFILE/ForSAFE family of models provides the most important fundamental understanding of the contribution of weathering to long-term availability of base cations to support forest growth. However, these approaches should be continually assessed against other approaches. Uncertainties in the model approaches can be further reduced, mainly by finding ways to reduce uncertainties in input data on soil texture and associated hydrological parameters but also by developing the models, e.g. to better represent biological feedbacks under the influence of climate change.
3.	Alewell, C, et al. (författare) Stable carbon isotopes as indicators for environmental change inpalsa peats 2011 Ingår i: Biogeosciences. - Kaltenburg-Lindau : European Geosciences Union. - 1726-4170 .- 1726-4189. ; 8, s. 1769-1778 Tidskriftsartikel (refereegranskat)abstract Palsa peats are unique northern ecosystems formed under an arctic climate and characterized by a high biodiversity and sensitive ecology. The stability of the palsas are seriously threatened by climate warming which will change the permafrost dynamic and induce a degradation of the mires.We used stable carbon isotope depth profiles in two palsa mires of Northern Sweden to track environmental change during the formation of the mires. Soils dominated by aerobic degradation can be expected to have a clear increase of carbon isotopes (δ13C) with depth, due to preferential release of 12C during aerobic mineralization. In soils with suppressed degradation due to anoxic conditions, stable carbon isotope depth profiles are either more or less uniform indicating no or very low degradation or depth profiles turn to lighter values due to an enrichment of recalcitrant organic substances during anaerobic mineralisation which are depleted in 13C.The isotope depth profile of the peat in the water saturated depressions (hollows) at the yet undisturbed mire Storflaket indicated very low to no degradation but increased rates of anaerobic degradation at the Stordalen site. The latter might be induced by degradation of the permafrost cores in the uplifted areas (hummocks) and subsequent breaking and submerging of the hummock peat into the hollows due to climate warming. Carbon isotope depth profiles of hummocks indicated a turn from aerobic mineralisation to anaerobic degradation at a peat depth between 4 and 25 cm. The age of these turning points was 14C dated between 150 and 670 yr and could thus not be caused by anthropogenically induced climate change. We found the uplifting of the hummocks due to permafrost heave the most likely explanation for our findings. We thus concluded that differences in carbon isotope profiles of the hollows might point to the disturbance of the mires due to climate warming or due to differences in hydrology. The characteristic profiles of the hummocks are indicators for micro-geomorphic change during permafrost up heaving.
4.	Almeida, Juan Pablo, et al. (författare) Nitrophobic ectomycorrhizal fungi are associated with enhanced hydrophobicity of soil organic matter in a Norway spruce forest 2022 Ingår i: Biogeosciences. - : Copernicus GmbH. - 1726-4170 .- 1726-4189. ; 19:15, s. 3713-3726 Tidskriftsartikel (refereegranskat)abstract In boreal forests an important part of the photo assimilates are allocated belowground to support symbiosis of ectomycorrhizal fungi (EMF). The production of EMF extramatrical mycelium can contribute to carbon (C) sequestration in soils, but the extent of this contribution depends on the composition of the EMF community. Some species can decrease soil C stocks by degrading soil organic matter (SOM), and certain species may enhance soil C stocks by producing hydrophobic mycelia which can reduce the rate of SOM decomposition. To test how EMF communities contribute to the development of hydrophobicity in SOM, we incubated sand-filled fungal-ingrowth mesh bags amended with maize compost for one, two or three growing seasons in non-fertilized and fertilized plots in a young Norway spruce (Picea abies) forest. We measured hydrophobicity as determined by the contact angle and the C/N ratios in the mesh bags contents along with the amount of new C entering the mesh bags from outside (determined by C3 input to C4 substrate), and related that to the fungal community composition. The proportion of EMF species increased over time to become the dominant fungal guild after three growing seasons. Fertilization significantly reduced fungal growth and altered EMF communities. In the control plots the most abundant EMF species was Piloderma olivaceum, which was absent in the fertilized plots. The hydrophobicity of the mesh bag contents reached the highest values after three growing seasons only in the unfertilized controls plots and was positively related to the abundance of P. olivaceum, the C/N ratios of the mesh bag contents and the amount of new C in the mesh bags. These results suggest that some EMF species are associated with higher hydrophobicity of SOM and that EMF community shifts induced by fertilization may result in reduced hydrophobicity of soil organic matter, which in turn may reduce C sequestration rates.
5.	Almeida, Juan Pablo, et al. (författare) Phosphorus regulates ectomycorrhizal fungi biomass production in a Norway spruce forest 2023 Ingår i: Biogeosciences. - : Copernicus Publications. - 1726-4170 .- 1726-4189. ; 20:7, s. 1443-1458 Tidskriftsartikel (refereegranskat)abstract Ectomycorrhizal fungi (EMF) are important components of soil microbial communities, and EMF biomass can potentially increase carbon (C) stocks by accumulating in the soils as necromass and producing recalcitrant structures. EMF growth depends on the C allocated belowground by the host trees, and the nutrient limitation on tree growth is expected to influence this allocation. Therefore, studying EMF production and understanding the factors that regulates it in natural soils are important to understand C cycling in forests.Fungal mycelium collected from ingrowth mesh bags is commonly used to estimate EMF biomass, but these measurements might not reflect the total EMF production since turnover rates of the hyphae are not considered. Here we estimated EMF production and turnover in response to P fertilization (applied as superphosphate) in a Norway spruce forest where nitrogen (N) deposition has resulted in phosphorus (P) limitation of plant production by using a combination of mesh bags with different incubation periods and with Bayesian inferences. To test how localized patches of N and P influence EMF production and turnover we amended some bags with a nitrogen source (methylene urea) or P source (apatite). Additionally, the Bayesian model tested the effect of seasonality (time of mesh-bag harvesting) on EMF production and turnover.We found that turnover of EMF was not affected by P fertilization or mesh-bag amendment. P fertilization had a negative effect on EMF production in all the mesh-bag amendments, suggesting a reduced belowground C allocation to the EMF when P limitation is alleviated. Apatite amendment significantly increased EMF biomass production in comparison with the pure quartz bags in the control plots but not in the P-fertilized plots. This indicates that P-rich patches enhance EMF production in P-limited forests, but not when P is not limiting. Urea amendment had a generally positive effect on EMF production, but this was significantly reduced by P fertilization, suggesting that a decrease in EMF production due to the alleviated P limitation will affect N foraging. Seasonality had a significant effect on EMF production, and the differences registered between the treatments were higher during the warmer months and disappeared at the end of the growing season.Many studies highlight the importance of N for regulating belowground C allocation to EMF in northern coniferous forests, but here we show that the P status of the forest can be equally important for belowground carbon allocation to EMF production in areas with high N deposition.
6.	Almén, Anna-Karin, et al. (författare) Negligible effects of ocean acidification on Eurytemora affinis (Copepoda) offspring production 2016 Ingår i: Biogeosciences. - : Copernicus GmbH. - 1726-4170 .- 1726-4189. ; 13:4, s. 1037-1048 Tidskriftsartikel (refereegranskat)abstract Ocean acidification is caused by increasing amounts of carbon dioxide dissolving in the oceans leading to lower seawater pH. We studied the effects of lowered pH on the calanoid copepod Eurytemora affinis during a mesocosm experiment conducted in a coastal area of the Baltic Sea. We measured copepod reproductive success as a function of pH, chlorophyll a concentration, diatom and dinoflagellate biomass, carbon to nitrogen (C : N) ratio of suspended particulate organic matter, as well as copepod fatty acid composition. The laboratory-based experiment was repeated four times during 4 consecutive weeks, with water and copepods sampled from pelagic mesocosms enriched with different CO2 concentrations. In addition, oxygen radical absorbance capacity (ORAC) of animals from the mesocosms was measured weekly to test whether the copepod's defence against oxidative stress was affected by pH. We found no effect of pH on offspring production. Phytoplankton biomass, as indicated by chlorophyll a concentration and dinoflagellate biomass, had a positive effect. The concentration of polyunsaturated fatty acids in the females was reflected in the eggs and had a positive effect on offspring production, whereas monounsaturated fatty acids of the females were reflected in their eggs but had no significant effect. ORAC was not affected by pH. From these experiments we conclude that E. affinis seems robust against direct exposure to ocean acidification on a physiological level, for the variables covered in the study. E. affinis may not have faced acute pH stress in the treatments as the species naturally face large pH fluctuations.
7.	Anderson, Leif G, 1951, et al. (författare) Export of calcium carbonate corrosive waters from the East Siberian Sea 2017 Ingår i: Biogeosciences. - : Copernicus GmbH. - 1726-4170 .- 1726-4189. ; 14:7, s. 1811-1823 Tidskriftsartikel (refereegranskat)abstract The Siberian shelf seas are areas of extensive biogeochemical transformation of organic matter, both of marine and terrestrial origin. This in combination with brine production from sea ice formation results in a cold bottom water of relative high salinity and partial pressure of carbon dioxide (pCO(2)). Data from the SWERUS-C3 expedition compiled on the icebreaker Oden in July to September 2014 show the distribution of such waters at the outer shelf, as well as their export into the deep central Arctic basins. Very high pCO(2) water, up to similar to 1000 mu atm, was observed associated with high nutrients and low oxygen concentrations. Consequently, this water had low saturation state with respect to calcium carbonate down to less than 0.8 for calcite and 0.5 for aragonite. Waters undersaturated in aragonite were also observed in the surface in waters at equilibrium with atmospheric CO2; however, at these conditions the cause of undersaturation was low salinity from river runoff and/or sea ice melt. The calcium carbonate corrosive water was observed all along the continental margin and well out into the deep Makarov and Canada basins at a depth from about 50 m depth in the west to about 150 m in the east. These waters of low aragonite saturation state are traced in historic data to the Canada Basin and in the waters flowing out of the Arctic Ocean north of Greenland and in the western Fram Strait, thus potentially impacting the marine life in the North Atlantic Ocean.
8.	Arevalo-Martinez, D. L., et al. (författare) Ideas and perspectives: Land-ocean connectivity through groundwater 2023 Ingår i: Biogeosciences. - : Copernicus GmbH. - 1726-4170 .- 1726-4189. ; 20:3, s. 647-662 Tidskriftsartikel (refereegranskat)abstract For millennia, humans have gravitated towards coastlines for theirresource potential and as geopolitical centres for global trade. A basicrequirement ensuring water security for coastal communities relies on adelicate balance between the supply and demand of potable water. Theinteraction between freshwater and saltwater in coastal settings is,therefore, complicated by both natural and human-driven environmentalchanges at the land-sea interface. In particular, ongoing sea-level rise,warming and deoxygenation might exacerbate such perturbations. In thiscontext, an improved understanding of the nature and variability ofgroundwater fluxes across the land-sea continuum is timely yet remains outof reach. The flow of terrestrial groundwater across the coastal transitionzone and the extent of freshened groundwater below the present-dayseafloor are receiving increased attention in marine and coastal sciencesbecause they likely represent a significant yet highly uncertain componentof (bio)geochemical budgets and because of the emerging interest in thepotential use of offshore freshened groundwater as a resource. At the sametime, "reverse" groundwater flux from offshore to onshore is of prevalentsocio-economic interest, as terrestrial groundwater resources arecontinuously pressured by over-pumping and seawater intrusion in many coastalregions worldwide. An accurate assessment of the land-ocean connectivitythrough groundwater and its potential responses to future anthropogenicactivities and climate change will require a multidisciplinary approachcombining the expertise of geophysicists, hydrogeologists, (bio)geochemistsand modellers. Such joint activities will lay the scientific basis forbetter understanding the role of groundwater in societally relevant issuessuch as climate change, pollution and the environmental status of thecoastal oceans within the framework of the United Nations SustainableDevelopment Goals. Here, we present our perspectives on future researchdirections to better understand land-ocean connectivity through groundwater,including the spatial distributions of the essential hydrogeologicalparameters, highlighting technical and scientific developments and brieflydiscussing the societal relevance of that connectivity in rapidly changing coastal oceans.
9.	Arnqvist, Johan, 1985-, et al. (författare) Robust processing of airborne laser scans to plant area density profiles 2020 Ingår i: Biogeosciences. - : Copernicus GmbH. - 1726-4170 .- 1726-4189. ; 17:23, s. 5939-5952 Tidskriftsartikel (refereegranskat)abstract We present a new algorithm for the estimation of the plant area density (PAD) profiles and plant area index (PAI) for forested areas based on data from airborne lidar. The new element in the algorithm is to scale and average returned lidar intensities for each lidar pulse, whereas other methods do not use the intensity information at all, use only average intensity values, or do not scale the intensity information, which can cause problems for heterogeneous vegetation. We compare the performance of the new algorithm to three previously published algorithms over two contrasting types of forest: a boreal coniferous forest with a relatively open structure and a dense beech forest. For the beech forest site, both summer (full-leaf) and winter (bare-tree) scans are analyzed, thereby testing the algorithm over a wide spectrum of PAIs. Whereas all tested algorithms give qualitatively similar results, absolute differences are large (up to 400 % for the average PAI at one site). A comparison with ground-based estimates shows that the new algorithm performs well for the tested sites. Specific weak points regarding the estimation of the PAD from airborne lidar data are addressed including the influence of ground reflections and the effect of small-scale heterogeneity, and we show how the effect of these points is reduced in the new algorithm, by combining benefits of earlier algorithms. We further show that low-resolution gridding of the PAD will lead to a negative bias in the resulting estimate according to Jensen's inequality for convex functions and that the severity of this bias is method dependent. As a result, the PAI magnitude as well as heterogeneity scales should be carefully considered when setting the resolution for the PAD gridding of airborne lidar scans.
10.	Baltar, Federico, et al. (författare) Cell-free extracellular enzymatic activity is linked to seasonal temperature changes : a case study in the Baltic Sea 2016 Ingår i: Biogeosciences. - : Copernicus GmbH. - 1726-4170 .- 1726-4189. ; 13:9, s. 2815-2821 Tidskriftsartikel (refereegranskat)abstract Extracellular enzymatic activities (EEA) are a crucial step on the degradation of organic matter. Dissolved (cell-free) extracellular enzymes in seawater can make up a significant contribution of the bulk EEA. However, the factors controlling the proportion of dissolved EEA in the marine environment remain unknown. Here we studied the seasonal changes in the proportion of dissolved relative to total EEA (of alkaline phosphatase [APase], β-glucosidase, [BGase], and leucine aminopeptidase, [LAPase]), in the Baltic Sea for 18 months. The proportio n of dissolved EEA ranged between 37-100%, 0-100%, 34-100% for APase, BGase and LAPase, respectively. A consistent seasonal pattern in the proportion of dissolved EEA was found among all the studied enzymes, with values up to 100% during winter and <40% du ring summer. A significant negative relation was found between the 21proportion of dissolved EEA and temperature, indicating that temperature might be a critical factor controlling the proportion of dissolved relative to total EEA in marine environments. Our results suggest a strong decoupling of hydrolysis rates from mi crobial dynamics in cold waters. This implies that under cold conditions, cell-free enzymes can contribute to substrate availability at large distances from the producing cell, increasing the dissociation between the hydrolysis of organic compounds and the actual microbes producing the enzymes. This also indicates that global warming could come to affect the hydrolysis of organic matter by reducing the hydrolytic activity of cell-free enzymes.
11.	Balzer, Laura, et al. (författare) Role of formation and decay of seston organic matter in the fate of methylmercury within the water column of a eutrophic lake 2023 Ingår i: Biogeosciences. - 1726-4170 .- 1726-4189. ; 20:7, s. 1459-1472 Tidskriftsartikel (refereegranskat)abstract Anoxic microniches in sinking particles in lakes have been identified as important water phase production zones of monomethylmercury (MeHg). However, the production and decay of MeHg during organic matter (OM) decomposition in the water column and its relation to the total Hg concentration in seston are poorly understood. We investigated total Hg and MeHg in relation to chemical changes in sinking seston and hydrochemical settings in a small and shallow (12 m deep) eutrophic lake during phytoplankton blooms from April to November 2019. The results show that MeHg proportions reach up to 22 % in seston in oxygen super saturation at the water surface and highest values (up to 26 %) at the oxic–suboxic redox boundary. MeHg concentrations were highest in May and November when algal biomass production was low and seston were dominated by zooplankton. Biodilution of MeHg concentrations could not be observed in the months of the highest algal biomass production; instead, MeHg and THg concentrations in seston were comparatively high. During suboxic OM decomposition and with decreasing redox potential (Mn and nitrate reduction), the concentration and proportion of MeHg in seston strongly decreased (<0.5 %), whereas total Hg concentrations show a 3.8- to 26-fold increase with water depth. Here, it remains unclear to which extent biodilution on the one hand and OM decomposition on the other alter the MeHg and THg concentration in seston. Changes in OM quality were most intense within or slightly below the redox transition zone (RTZ). The concentrations of MeHg and THg in seston from the RTZ were comparable to those found in the sediment trap material which integrated the changes in seston composition during the entire sampling period, suggesting that changes in the MeHg and THg content in the hypolimnion below the RTZ are comparatively small. Our study suggests that, in shallow eutrophic lakes, the water phase formation and decomposition of MeHg is intense and controlled by the decomposition of algal biomass and is, assumedly, largely disconnected from Hg methylation in sediments, similar to what has been observed in deep oligotrophic lakes.
12.	Bartsch, Annett, et al. (författare) Can C-band synthetic aperture radar be used to estimate soil organic carbon storage in tundra? 2016 Ingår i: Biogeosciences. - : Copernicus GmbH. - 1726-4170 .- 1726-4189. ; 13:19, s. 5453-5470 Tidskriftsartikel (refereegranskat)abstract A new approach for the estimation of soil organic carbon (SOC) pools north of the tree line has been developed based on synthetic aperture radar (SAR; ENVISAT Advanced SAR Global Monitoring mode) data. SOC values are directly determined from backscatter values instead of upscaling using land cover or soil classes. The multi-mode capability of SAR allows application across scales. It can be shown that measurements in C band under frozen conditions represent vegetation and surface structure properties which relate to soil properties, specifically SOC. It is estimated that at least 29 Pg C is stored in the upper 30 cm of soils north of the tree line. This is approximately 25% less than stocks derived from the soil-map-based Northern Circumpolar Soil Carbon Database (NCSCD). The total stored carbon is underestimated since the established empirical relationship is not valid for peatlands or strongly cryoturbated soils. The approach does, however, provide the first spatially consistent account of soil organic carbon across the Arctic. Furthermore, it could be shown that values obtained from 1 km resolution SAR correspond to accounts based on a high spatial resolution (2 m) land cover map over a study area of about 7 x 7 km in NE Siberia. The approach can be also potentially transferred to medium-resolution C-band SAR data such as ENVISAT ASAR Wide Swath with similar to 120m resolution but it is in general limited to regions without woody vegetation. Global Monitoring-mode-derived SOC increases with unfrozen period length. This indicates the importance of this parameter for modelling of the spatial distribution of soil organic carbon storage.
13.	Bastviken, David, et al. (författare) Technical Note: Cost-efficient approaches to measure carbon dioxide (CO2) fluxes and concentrations in terrestrial and aquatic environments using mini loggers 2015 Ingår i: Biogeosciences. - : European Geosciences Union (EGU) / Copernicus Publications. - 1726-4170 .- 1726-4189. ; 12:12, s. 3849-3859 Tidskriftsartikel (refereegranskat)abstract Fluxes of CO2 are important for our understanding of the global carbon cycle and greenhouse gas balances. Several significant CO2 fluxes in nature may still be unknown as illustrated by recent findings of high CO2 emissions from aquatic environments, previously not recognized in global carbon balances. Therefore, it is important to develop convenient and affordable ways to measure CO2 in many types of environments. At present, direct measurements of CO2 fluxes from soil or water, or CO2 concentrations in surface water, are typically labor intensive or require costly equipment. We here present an approach with measurement units based on small inexpensive CO2 loggers, originally made for indoor air quality monitoring, that were tested and adapted for field use. Measurements of soil-atmosphere and lake-atmosphere fluxes, as well as of spatiotemporal dynamics of water CO2 concentrations (expressed as the equivalent partial pressure, pCO(2aq)) in lakes and a stream network are provided as examples. Results from all these examples indicate that this approach can provide a cost- and labor-efficient alternative for direct measurements and monitoring of CO2 flux and pCO(2aq) in terrestrial and aquatic environments.
14.	Bastviken, David, et al. (författare) Technical note: Facilitating the use of low-cost methane (CH4) sensors in flux chambers - calibration, data processing, and an open-source make-it-yourself logger 2020 Ingår i: Biogeosciences. - : COPERNICUS GESELLSCHAFT MBH. - 1726-4170 .- 1726-4189. ; 17:13, s. 3659-3667 Tidskriftsartikel (refereegranskat)abstract A major bottleneck regarding the efforts to better quantify greenhouse gas fluxes, map sources and sinks, and understand flux regulation is the shortage of low-cost and accurate-enough measurement methods. The studies of methane (CH4) - a long-lived greenhouse gas increasing rapidly but irregularly in the atmosphere for unclear reasons, and with poorly understood source-sink attribution - suffer from such method limitations. This study presents new calibration and data processing approaches for use of a low-cost CH4 sensor in flux chambers. Results show that the change in relative CH4 levels can be determined at rather high accuracy in the 2-700 ppm mole fraction range, with modest efforts of collecting reference samples in situ and without continuous access to expensive reference instruments. This opens possibilities for more affordable and time-effective measurements of CH4 in flux chambers. To facilitate such measurements, we also provide a description for building and using an Arduino logger for CH4, carbon dioxide (CO2), relative humidity, and temperature.
15.	Bauwens, Maite, et al. (författare) Recent past (1979-2014) and future (2070-2099) isoprene fluxes over Europe simulated with the MEGAN-MOHYCAN model 2018 Ingår i: Biogeosciences. - : Copernicus GmbH. - 1726-4170 .- 1726-4189. ; 15:12, s. 3673-3690 Tidskriftsartikel (refereegranskat)abstract Isoprene is a highly reactive volatile organic compound emitted by vegetation, known to be a precursor of secondary organic aerosols and to enhance tropospheric ozone formation under polluted conditions. Isoprene emissions respond strongly to changes in meteorological parameters such as temperature and solar radiation. In addition, the increasing CO2 concentration has a dual effect, as it causes both a direct emission inhibition as well as an increase in biomass through fertilization. In this study we used the MEGAN (Model of Emissions of Gases and Aerosols from Nature) emission model coupled with the MOHYCAN (Model of HYdrocarbon emissions by the CANopy) canopy model to calculate the isoprene fluxes emitted by vegetation in the recent past (1979-2014) and in the future (2070-2099) over Europe at a resolution of 0.1° × 0.1°. As a result of the changing climate, modeled isoprene fluxes increased by 1.1%yr-1 on average in Europe over 1979-2014, with the strongest trends found over eastern Europe and European Russia, whereas accounting for the CO2 inhibition effect led to reduced emission trends (0.76%yr-1). Comparisons with field campaign measurements at seven European sites suggest that the MEGAN-MOHYCAN model provides a reliable representation of the temporal variability of the isoprene fluxes over timescales between 1h and several months. For the 1979-2014 period the model was driven by the ECMWF ERA-Interim reanalysis fields, whereas for the comparison of current with projected future emissions, we used meteorology simulated with the ALARO regional climate model. Depending on the representative concentration pathway (RCP) scenarios for greenhouse gas concentration trajectories driving the climate projections, isoprene emissions were found to increase by +7% (RCP2.6), +33% (RCP4.5), and +83% (RCP8.5), compared to the control simulation, and even stronger increases were found when considering the potential impact of CO2 fertilization: +15% (RCP2.6), +52% (RCP4.5), and +141% (RCP8.5). However, the inhibitory CO2 effect goes a long way towards canceling these increases. Based on two distinct parameterizations, representing strong or moderate inhibition, the projected emissions accounting for all effects were estimated to be 0-17% (strong inhibition) and 11-65% (moderate inhibition) higher than in the control simulation. The difference obtained using the two CO2 parameterizations underscores the large uncertainty associated to this effect.
16.	Beckebanze, Lutz, et al. (författare) Lateral carbon export has low impact on the net ecosystem carbon balance of a polygonal tundra catchment 2022 Ingår i: Biogeosciences. - : Copernicus Publications. - 1726-4170 .- 1726-4189. ; 19:16, s. 3863-3876 Tidskriftsartikel (refereegranskat)abstract Permafrost-affected soils contain large quantities of soil organic carbon (SOC). Changes in the SOC pool of a particular ecosystem can be related to its net ecosystem carbon balance (NECB) in which the balance of carbon (C) influxes and effluxes is expressed. For polygonal tundra landscapes, accounts of ecosystem carbon balances in the literature are often solely based on estimates of vertical carbon fluxes. To fill this gap, we present data regarding the lateral export rates of dissolved inorganic carbon (DIC) and dissolved organic carbon (DOC) from a polygonal tundra site in the north Siberian Lena River delta, Russia. We use water discharge observations in combination with concentration measurements of waterborne carbon to derive the lateral carbon fluxes from one growing season (2 June–8 September 2014 for DOC, 8 June–8 September 2014 for DIC). To put the lateral C fluxes into context, we furthermore present the surface–atmosphere eddy covariance fluxes of carbon dioxide (CO2) and methane (CH4) from this study site. The results show cumulative lateral DIC and DOC fluxes of 0.31–0.38 and 0.06–0.08 g m−2, respectively, during the 93 d observation period (8 June–8 September 2014). Vertical turbulent fluxes of CO2-C and CH4-C accumulated to −19.0 ± 1.2 and 1.0 ± 0.02 g m−2 in the same period. Thus, the lateral C export represented about 2 % of the net ecosystem exchange of (NEE) CO2. However, the relationship between lateral and surface–atmosphere fluxes changed over the observation period. At the beginning of the growing season (early June), the lateral C flux outpaced the surface-directed net vertical turbulent CO2 flux, causing the polygonal tundra landscape to be a net carbon source during this time of the year. Later in the growing season, the vertical turbulent CO2 flux dominated the NECB.
17.	Berggren, Martin, et al. (författare) Quality transformation of dissolved organic carbon during water transit through lakes : contrasting controls by photochemical and biological processes 2018 Ingår i: Biogeosciences. - : European Geosciences Union (EGU). - 1726-4170 .- 1726-4189. ; 15:2, s. 457-470 Tidskriftsartikel (refereegranskat)abstract Dissolved organic carbon (DOC) may be removed, transformed, or added during water transit through lakes, resulting in changes in DOC composition and pigmentation (color). However, the process-based understanding of these changes is incomplete, especially for headwater lakes. We hypothesized that because heterotrophic bacteria preferentially consume noncolored DOC, while photochemical processing removes colored fractions, the overall changes in DOC color upon water passage through a lake depend on the relative importance of these two processes, accordingly. To test this hypothesis we combined laboratory experiments with field studies in nine boreal lakes, assessing both the relative importance of different DOC decay processes (biological or photochemical) and the loss of color during water transit time (WTT) through the lakes. We found that influence from photo-decay dominated changes in DOC quality in the epilimnia of relatively clear headwater lakes, resulting in systematic and selective net losses of colored DOC. However, in highly pigmented brown-water lakes (absorbance at 420 nm > 7 m(-1)) biological processes dominated, and there was no systematic relationship between color loss and WTT. Moreover, in situ data and dark experiments supported our hypothesis on the selective microbial removal of nonpigmented DOC, mainly of low molecular weight, leading to persistent water color in these highly colored lakes. Our study shows that brown headwater lakes may not conform to the commonly reported pattern of the selective removal of colored constituents in freshwaters, as DOC can show a sustained degree of pigmentation upon transit through these lakes.
18.	Bermudez, Rafael, et al. (författare) Effect of ocean acidification on the structure and fatty acid composition of a natural plankton community in the Baltic Sea 2016 Ingår i: Biogeosciences. - : Copernicus GmbH. - 1726-4170 .- 1726-4189. ; 13:24, s. 6625-6635 Tidskriftsartikel (refereegranskat)abstract Increasing atmospheric carbon dioxide (CO2) is changing seawater chemistry towards reduced pH, which affects various properties of marine organisms. Coastal and brackish water communities are expected to be less affected by ocean acidification (OA) as these communities are typically adapted to high fluctuations in CO2 and pH. Here we investigate the response of a coastal brackish water plankton community to increasing CO2 levels as projected for the coming decades and the end of this century in terms of community and biochemical fatty acid (FA) composition. A Baltic Sea plankton community was enclosed in a set of offshore mesocosms and subjected to a CO2 gradient ranging from natural concentrations (similar to 347 mu atm fCO(2)) up to values projected for the year 2100 (similar to 1333 mu atm fCO(2)). We show that the phytoplankton community composition was resilient to CO2 and did not diverge between the treatments. Seston FA composition was influenced by community composition, which in turn was driven by silicate and phosphate limitation in the mesocosms and showed no difference between the CO2 treatments. These results suggest that CO2 effects are dampened in coastal communities that already experience high natural fluctuations in pCO(2). Although this coastal plankton community was tolerant of high pCO(2) levels, hypoxia and CO2 uptake by the sea can aggravate acidification and may lead to pH changes outside the currently experienced range for coastal organisms.
19.	Bischoff, Juliane, et al. (författare) Source, transport and fate of soil organic matter inferred from microbial biomarker lipids on the East Siberian Arctic Shelf 2016 Ingår i: Biogeosciences. - : Copernicus GmbH. - 1726-4170 .- 1726-4189. ; 13:17, s. 4899-4914 Tidskriftsartikel (refereegranskat)abstract The Siberian Arctic contains a globally significant pool of organic carbon (OC) vulnerable to enhanced warming and subsequent release by both fluvial and coastal erosion processes. However, the rate of release, its behaviour in the Arctic Ocean and vulnerability to remineralisation is poorly understood. Here we combine new measurements of microbial biohopanoids including adenosylhopane, a lipid associated with soil microbial communities, with published glycerol dialkyl glycerol tetraethers (GDGTs) and bulk delta C-13 measurements to improve knowledge of the fate of OC transported to the East Siberian Arctic Shelf (ESAS). The microbial hopanoid-based soil OC proxy R'(soil) ranges from 0.0 to 0.8 across the ESAS, with highest values nearshore and decreases offshore. Across the shelf R'(soil) displays a negative linear correlation with bulk delta C-13 measurements (r(2) = -0.73, p = < 0 : 001). When compared to the GDGT-based OC proxy, the branched and isoprenoid tetraether (BIT) index, a decoupled (non-linear) behaviour on the shelf was observed, particularly in the Buor-Khaya Bay, where the R'(soil) shows limited variation, whereas the BIT index shows a rapid decline moving away from the Lena River outflow channels. This reflects a balance between delivery and removal of OC from different sources. The good correlation between the hopanoid and bulk terrestrial signal suggests a broad range of hopanoid sources, both fluvial and via coastal erosion, whilst GDGTs appear to be primarily sourced via fluvial transport. Analysis of ice complex deposits (ICDs) revealed an average R'(soil) of 0.5 for the Lena Delta, equivalent to that of the Buor-Khaya Bay sediments, whilst ICDs from further east showed higher values (0.6-0.85). Although R'(soil) correlates more closely with bulk OC than the BIT, our understanding of the endmembers of this system is clearly still incomplete, with variations between the different East Siberian Arctic regions potentially reflecting differences in environmental conditions (e.g. temperature, pH), but other physiological controls on microbial bacteriohopanepolyol (BHP) production under psychrophilic conditions are as yet unknown.
20.	Blume-Werry, Gesche, 1985-, et al. (författare) Ideas and perspectives : Alleviation of functional limitations by soil organisms is key to climate feedbacks from arctic soils 2023 Ingår i: Biogeosciences. - : Copernicus Publications. - 1726-4170 .- 1726-4189. ; 20:10, s. 1979-1990 Tidskriftsartikel (refereegranskat)abstract Arctic soils play an important role in Earth's climate system, as they store large amounts of carbon that, if released, could strongly increase greenhouse gas levels in our atmosphere. Most research to date has focused on how the turnover of organic matter in these soils is regulated by abiotic factors, and few studies have considered the potential role of biotic regulation. However, arctic soils are currently missing important groups of soil organisms, and here, we highlight recent empirical evidence that soil organisms' presence or absence is key to understanding and predicting future climate feedbacks from arctic soils. We propose that the arrival of soil organisms into arctic soils may introduce novel functions, resulting in increased rates of, for example, nitrification, methanogenesis, litter fragmentation, or bioturbation, and thereby alleviate functional limitations of the current community. This alleviation can greatly enhance decomposition rates, in parity with effects predicted due to increasing temperatures. We base this argument on a series of emerging experimental evidence suggesting that the dispersal of until-then absent micro-, meso-, and macroorganisms (i.e. from bacteria to earthworms) into new regions and newly thawed soil layers can drastically affect soil functioning. These new observations make us question the current view that neglects organism-driven alleviation effects when predicting future feedbacks between arctic ecosystems and our planet's climate. We therefore advocate for an updated framework in which soil biota and the functions by which they influence ecosystem processes become essential when predicting the fate of soil functions in warming arctic ecosystems.
21.	Bonaglia, Stefano, et al. (författare) The fate of fixed nitrogen in marine sediments with low organic loading : an in situ study 2017 Ingår i: Biogeosciences. - : Copernicus GmbH. - 1726-4170 .- 1726-4189. ; 14:2, s. 285-300 Tidskriftsartikel (refereegranskat)abstract Over the last decades, the impact of human activities on the global nitrogen (N) cycle has drastically increased. Consequently, benthic N cycling has mainly been studied in anthropogenically impacted estuaries and coasts, while in oligotrophic systems its understanding is still scarce. Here we report on benthic solute fluxes and on rates of denitrification, anammox, and dissimilatory nitrate reduction to ammonium (DNRA) studied by in situ incubations with benthic chamber landers during two cruises to the Gulf of Bothnia (GOB), a cold, oligotrophic basin located in the northern part of the Baltic Sea. Rates of N burial were also inferred to investigate the fate of fixed N in these sediments. Most of the total dissolved fixed nitrogen (TDN) diffusing to the water column was composed of organic N. Average rates of dinitrogen (N-2) production by denitrification and anammox (range: 53-360 mu mol Nm(-2) day(-1)) were comparable to those from Arctic and subarctic sediments worldwide (range: 34-344 mu mol Nm(-2) day(-1)). Anammox accounted for 18-26% of the total N2 production. Absence of free hydrogen sulfide and low concentrations of dissolved iron in sediment pore water suggested that denitrification and DNRA were driven by organic matter oxidation rather than chemolithotrophy. DNRA was as important as denitrification at a shallow, coastal station situated in the northern Bothnian Bay. At this pristine and fully oxygenated site, ammonium regeneration through DNRA contributed more than one-third to the TDN efflux and accounted, on average, for 45% of total nitrate reduction. At the offshore stations, the proportion of DNRA in relation to denitrification was lower (0-16% of total nitrate reduction). Median value and range of benthic DNRA rates from the GOB were comparable to those from the southern and central eutrophic Baltic Sea and other temperate estuaries and coasts in Europe. Therefore, our results contrast with the view that DNRA is negligible in cold and well-oxygenated sediments with low organic carbon loading. However, the mechanisms behind the variability in DNRA rates between our sites were not resolved. The GOB sediments were a major source (237 kt yr(-1), which corresponds to 184% of the external N load) of fixed N to the water column through recycling mechanisms. To our knowledge, our study is the first to document the simultaneous contribution of denitrification, DNRA, anammox, and TDN recycling combined with in situ measurements.
22.	Bonnet, Sophie, et al. (författare) In-depth characterization of diazotroph activity across the western tropical South Pacific hotspot of N-2 fixation (OUTPACE cruise) 2018 Ingår i: Biogeosciences. - : Copernicus GmbH. - 1726-4170 .- 1726-4189. ; 15:13, s. 4215-4232 Tidskriftsartikel (refereegranskat)abstract Here we report N-2 fixation rates from a similar to 4000 km transect in the western and central tropical South Pacific, a particularly undersampled region in the world ocean. Water samples were collected in the euphotic layer along a west to east transect from 160 degrees E to 160 degrees W that covered contrasting trophic regimes, from oligotrophy in the Melanesian archipelago (MA) waters to ultraoligotrophy in the South Pacific Gyre (GY) waters. N-2 fixation was detected at all 17 sampled stations with an average depth-integrated rate of 631 +/- 286 mu mol Nm(-2) d(-1) (range 196-1153 mu mol Nm(-2) d(-1)) in MA waters and of 85 +/- 79 mu mol Nm(-2) d(-1) (range 18-172 mu mol Nm(-2) d(-1)) in GY waters. Two cyanobacteria, the larger colonial filamentous Trichodesmium and the smaller UCYN-B, dominated the enumerated diazotroph community (>80 %) and gene expression of the nifH gene (cDNA > 10(5) nifH copies L-1) in MA waters. Single-cell isotopic analyses performed by nanoscale secondary ion mass spectrometry (nanoSIMS) at selected stations revealed that Trichodesmium was always the major contributor to N-2 fixation in MA waters, accounting for 47.1-83.8% of bulk N-2 fixation. The most plausible environmental factors explaining such exceptionally high rates of N-2 fixation in MA waters are discussed in detail, emphasizing the role of macro- and micro-nutrient (e.g., iron) availability, seawater temperature and currents.
23.	Borg, Hans, et al. (författare) Long-term trends of water chemistry in mountain streams in Sweden - slow recovery from acidification 2014 Ingår i: Biogeosciences. - Göttingen : COPERNICUS GESELLSCHAFT MBH. - 1726-4170 .- 1726-4189. ; 11:1, s. 173-184 Tidskriftsartikel (refereegranskat)abstract The water chemistry of streams and precipitation in the province of Jamtland, northern Sweden has been monitored since the 1980s to study long-term trends, occurrence of acid episodes, and effects of liming. The acidity in precipitation increased in the 1970s, followed by a loss of acid neutralizing capacity (ANC) and low pH in the streams. Sulfur deposition began to decrease in the 1980s, until approximately 2000, after which the decrease levelled out. Stream water sulfate concentration followed the precipitation trend but decreased more slowly and since the late 1990s a subtle increase was observed. Sulfate concentrations in the snow typically have been higher than or equal to the stream sulfate levels. However, during the period of rapid deposition decrease and also since 2005 stream sulfate has sometimes exceeded snow sulfate, indicating desorption of stored soil sulfate, possibly because of climate-related changes in runoff routes through the soil profiles, following shorter periods of frost. From 1982 to 2000, total organic carbon (TOC) increased by approximately 0.1 mg L-1 yr(-1). The mean trends in sulfate and TOC from approximately 1990 until today were generally opposite. Acidic episodes with pH 4.0 at flow peaks occurred frequently in the unlimed streams, despite relatively well-buffered waters at baseflow. To evaluate the main causes for the loss of ANC during episodes, the changes in major ion concentrations during high flow episodes were evaluated. The most important factors contributing to ANC loss were dilution of base cations (Na+, K+, Ca2+, Mg2+), enrichment of organic anions and enrichment of sulfate. Wetland liming started in 1985 after which the earlier observed extreme peak values of iron, manganese and aluminium, did not reoccur. The studied area is remote from emission sources in Europe, but the critical load of acidity is still exceeded. The long-term recovery observed in the unlimed streams is thus slow, and severe acidic episodes still occur.
24.	Bouton, Anthony, et al. (författare) Linking the distribution of microbial deposits from the Great Salt Lake (Utah, USA) to tectonic and climatic processes 2016 Ingår i: Biogeosciences. - : Copernicus GmbH. - 1726-4170 .- 1726-4189. ; 13:19, s. 5511-5526 Tidskriftsartikel (refereegranskat)abstract The Great Salt Lake is a modern hypersaline lake, in which an extended modern and ancient microbial sedimentary system has developed. Detailed mapping based on aerial images and field observations can be used to identify non-random distribution patterns of microbial deposits, such as paleoshorelines associated with extensive polygons or fault-parallel alignments. Although it has been inferred that climatic changes controlling the lake level fluctuations explain the distribution of paleoshorelines and polygons, straight microbial deposit alignments may underline a normal fault system parallel to the Wasatch Front. This study is based on observations over a decimetre to kilometre spatial range, resulting in an integrated conceptual model for the controls on the distribution of the microbial deposits. The morphology, size and distribution of these deposits result mainly from environmental changes (i.e. seasonal to long-term water level fluctuations, particular geomorphological heritage, fault-induced processes, groundwater seepage) and have the potential to bring further insights into the reconstruction of paleoenvironments and paleoclimatic changes through time. New ra-diocarbon ages obtained on each microbial macrofabric described in this study improve the chronological framework and question the lake level variations that are commonly assumed.
25.	Brachmann, Cole, 1993, et al. (författare) Herbivore-shrub interactions influence ecosystem respiration and biogenic volatile organic compound composition in the subarctic 2023 Ingår i: Biogeosciences. - 1726-4170 .- 1726-4189. ; 20, s. 4069-4086 Tidskriftsartikel (refereegranskat)abstract Arctic ecosystems are warming nearly 4 times faster than the global average, which is resulting in plant community shifts and subsequent changes in biogeochemical processes such as gaseous fluxes. Additionally, herbivores shape plant communities and thereby may alter the magnitude and composition of ecosystem respiration and biogenic volatile organic compound (BVOC) emissions. Here we determine the effect of large mammalian herbivores on ecosystem respiration and BVOC emissions in two southern and two northern sites in Swedish Scandes, encompassing mountain birch (LOMB) and shrub heath (LORI) communities in the south and low-herb meadow (RIGA) and shrub heath (RIRI) communities in the north. Herbivory significantly altered BVOC composition between sites and decreased ecosystem respiration at RIGA. The difference in graminoid cover was found to have a large effect on ecosystem respiration between sites as RIGA, with the highest cover, had 35 % higher emissions than the next highest-emitting site (LOMB). Additionally, LOMB had the highest emissions of terpenes, with the northern sites having significantly lower emissions. Differences between sites were primarily due to differences in exclosure effects and soil temperature and the prevalence of different shrub growth forms. Our results suggest that herbivory has a significant effect on trace gas fluxes in a productive meadow community and that differences between communities may be driven by differences in shrub composition. Copyright:

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