| 1. |
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| 2. |
- Klionsky, Daniel J., et al.
(författare)
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Guidelines for the use and interpretation of assays for monitoring autophagy
- 2012
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Ingår i: Autophagy. - : Informa UK Limited. - 1554-8635 .- 1554-8627. ; 8:4, s. 445-544
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Forskningsöversikt (refereegranskat)abstract
- In 2008 we published the first set of guidelines for standardizing research in autophagy. Since then, research on this topic has continued to accelerate, and many new scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Accordingly, it is important to update these guidelines for monitoring autophagy in different organisms. Various reviews have described the range of assays that have been used for this purpose. Nevertheless, there continues to be confusion regarding acceptable methods to measure autophagy, especially in multicellular eukaryotes. A key point that needs to be emphasized is that there is a difference between measurements that monitor the numbers or volume of autophagic elements (e.g., autophagosomes or autolysosomes) at any stage of the autophagic process vs. those that measure flux through the autophagy pathway (i.e., the complete process); thus, a block in macroautophagy that results in autophagosome accumulation needs to be differentiated from stimuli that result in increased autophagic activity, defined as increased autophagy induction coupled with increased delivery to, and degradation within, lysosomes (in most higher eukaryotes and some protists such as Dictyostelium) or the vacuole (in plants and fungi). In other words, it is especially important that investigators new to the field understand that the appearance of more autophagosomes does not necessarily equate with more autophagy. In fact, in many cases, autophagosomes accumulate because of a block in trafficking to lysosomes without a concomitant change in autophagosome biogenesis, whereas an increase in autolysosomes may reflect a reduction in degradative activity. Here, we present a set of guidelines for the selection and interpretation of methods for use by investigators who aim to examine macroautophagy and related processes, as well as for reviewers who need to provide realistic and reasonable critiques of papers that are focused on these processes. These guidelines are not meant to be a formulaic set of rules, because the appropriate assays depend in part on the question being asked and the system being used. In addition, we emphasize that no individual assay is guaranteed to be the most appropriate one in every situation, and we strongly recommend the use of multiple assays to monitor autophagy. In these guidelines, we consider these various methods of assessing autophagy and what information can, or cannot, be obtained from them. Finally, by discussing the merits and limits of particular autophagy assays, we hope to encourage technical innovation in the field.
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| 3. |
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- 2019
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Tidskriftsartikel (refereegranskat)
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| 4. |
- Ademuyiwa, Adesoji O., et al.
(författare)
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Determinants of morbidity and mortality following emergency abdominal surgery in children in low-income and middle-income countries
- 2016
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Ingår i: BMJ Global Health. - : BMJ Publishing Group Ltd. - 2059-7908. ; 1:4
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Tidskriftsartikel (refereegranskat)abstract
- Background: Child health is a key priority on the global health agenda, yet the provision of essential and emergency surgery in children is patchy in resource-poor regions. This study was aimed to determine the mortality risk for emergency abdominal paediatric surgery in low-income countries globally.Methods: Multicentre, international, prospective, cohort study. Self-selected surgical units performing emergency abdominal surgery submitted prespecified data for consecutive children aged <16 years during a 2-week period between July and December 2014. The United Nation's Human Development Index (HDI) was used to stratify countries. The main outcome measure was 30-day postoperative mortality, analysed by multilevel logistic regression.Results: This study included 1409 patients from 253 centres in 43 countries; 282 children were under 2 years of age. Among them, 265 (18.8%) were from low-HDI, 450 (31.9%) from middle-HDI and 694 (49.3%) from high-HDI countries. The most common operations performed were appendectomy, small bowel resection, pyloromyotomy and correction of intussusception. After adjustment for patient and hospital risk factors, child mortality at 30 days was significantly higher in low-HDI (adjusted OR 7.14 (95% CI 2.52 to 20.23), p<0.001) and middle-HDI (4.42 (1.44 to 13.56), p=0.009) countries compared with high-HDI countries, translating to 40 excess deaths per 1000 procedures performed.Conclusions: Adjusted mortality in children following emergency abdominal surgery may be as high as 7 times greater in low-HDI and middle-HDI countries compared with high-HDI countries. Effective provision of emergency essential surgery should be a key priority for global child health agendas.
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| 5. |
- Nehme, Ralda, et al.
(författare)
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The 22q11.2 region regulates presynaptic gene-products linked to schizophrenia
- 2022
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Ingår i: Nature Communications. - : Nature Publishing Group. - 2041-1723. ; 13:1
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Tidskriftsartikel (refereegranskat)abstract
- It is unclear how the 22q11.2 deletion predisposes to psychiatric disease. To study this, we generated induced pluripotent stem cells from deletion carriers and controls and utilized CRISPR/Cas9 to introduce the heterozygous deletion into a control cell line. Here, we show that upon differentiation into neural progenitor cells, the deletion acted in trans to alter the abundance of transcripts associated with risk for neurodevelopmental disorders including autism. In excitatory neurons, altered transcripts encoded presynaptic factors and were associated with genetic risk for schizophrenia, including common and rare variants. To understand how the deletion contributed to these changes, we defined the minimal protein-protein interaction network that best explains gene expression alterations. We found that many genes in 22q11.2 interact in presynaptic, proteasome, and JUN/FOS transcriptional pathways. Our findings suggest that the 22q11.2 deletion impacts genes that may converge with psychiatric risk loci to influence disease manifestation in each deletion carrier.
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| 6. |
- Sumaila, U. Rashid, et al.
(författare)
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WTO must ban harmful fisheries subsidies
- 2021
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Ingår i: Science. - : American Association for the Advancement of Science (AAAS). - 0036-8075 .- 1095-9203. ; 374:6567, s. 544-544
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Tidskriftsartikel (övrigt vetenskapligt/konstnärligt)
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| 7. |
- Álvaro, J. Javier, et al.
(författare)
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Global Cambrian trilobite palaeobiogeography assessed using parsimony analysis of endemicity
- 2013
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Ingår i: Early Palaeozoic Biogeography and Palaeogeography. - 0435-4052. - 9781862393738 ; Memoir 38:38, s. 273-296
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Bokkapitel (refereegranskat)abstract
- Palaeobiogeographical data on Cambrian trilobites obtained during the twentieth century are combined in this paper to evaluate palaeoceanographic links through c. 30 myr, once these arthropods biomineralized. Worldwide major tectonostratigraphic units are characterized at series intervals of Cambrian time and datasets of trilobite genera (629 for Cambrian Series 2, 965 for Cambrian Series 3, and 866 for the Furongian Series) are analysed using parsimony analysis of endemicity. Special attention is given to the biogeographical observations made in microcontinents and exotic terranes. The same is done for platform-basinal transects of well-known continental margins. The parsimony analysis of endemicity analysis resulted in distinct palaeogeographical area groupings among the tectonostratigraphic units. With these groupings, several palaeobiogeographical units are distinguished, which do not necessarily fit the previously proposed biogeographical realms and provinces. Their development and spatial distributions are broadly controlled by Cambrian palaeoclimates, palaeogeographical conditions (e.g. carbonate productivity and anoxic conditions) and ocean current circulation.
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| 8. |
- Anav, Alessandro, et al.
(författare)
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Spatiotemporal patterns of terrestrial gross primary production : A review
- 2015
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Ingår i: Reviews of geophysics. - 8755-1209 .- 1944-9208. ; 53:3, s. 785-818
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Forskningsöversikt (refereegranskat)abstract
- Great advances have been made in the last decade in quantifying and understanding the spatiotemporal patterns of terrestrial gross primary production (GPP) with ground, atmospheric, and space observations. However, although global GPP estimates exist, each data set relies upon assumptions and none of the available data are based only on measurements. Consequently, there is no consensus on the global total GPP and large uncertainties exist in its benchmarking. The objective of this review is to assess how the different available data sets predict the spatiotemporal patterns of GPP, identify the differences among data sets, and highlight the main advantages/disadvantages of each data set. We compare GPP estimates for the historical period (1990-2009) from two observation-based data sets (Model Tree Ensemble and Moderate Resolution Imaging Spectroradiometer) to coupled carbon-climate models and terrestrial carbon cycle models from the Fifth Climate Model Intercomparison Project and TRENDY projects and to a new hybrid data set (CARBONES). Results show a large range in the mean global GPP estimates. The different data sets broadly agree on GPP seasonal cycle in terms of phasing, while there is still discrepancy on the amplitude. For interannual variability (IAV) and trends, there is a clear separation between the observation-based data that show little IAV and trend, while the process-based models have large GPP variability and significant trends. These results suggest that there is an urgent need to improve observation-based data sets and develop carbon cycle modeling with processes that are currently treated either very simplistically to correctly estimate present GPP and better quantify the future uptake of carbon dioxide by the world's vegetation.
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| 9. |
- Bacon, David J., et al.
(författare)
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Cosmology with Phase 1 of the Square Kilometre Array Red Book 2018 : Technical specifications and performance forecasts
- 2020
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Ingår i: Publications Astronomical Society of Australia. - : Cambridge University Press (CUP). - 1323-3580 .- 1448-6083. ; 37
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Tidskriftsartikel (refereegranskat)abstract
- We present a detailed overview of the cosmological surveys that we aim to carry out with Phase 1 of the Square Kilometre Array (SKA1) and the science that they will enable. We highlight three main surveys: a medium-deep continuum weak lensing and low-redshift spectroscopic HI galaxy survey over 5 000 deg2; a wide and deep continuum galaxy and HI intensity mapping (IM) survey over 20 000 deg2 from z = 0.35 to 3; and a deep, high-redshift HI IM survey over 100 deg2 from z = 3 to 6. Taken together, these surveys will achieve an array of important scientific goals: measuring the equation of state of dark energy out to z = 3 with percent-level precision measurements of the cosmic expansion rate; constraining possible deviations from General Relativity on cosmological scales by measuring the growth rate of structure through multiple independent methods; mapping the structure of the Universe on the largest accessible scales, thus constraining fundamental properties such as isotropy, homogeneity, and non-Gaussianity; and measuring the HI density and bias out to z = 6. These surveys will also provide highly complementary clustering and weak lensing measurements that have independent systematic uncertainties to those of optical and near-infrared (NIR) surveys like Euclid, LSST, and WFIRST leading to a multitude of synergies that can improve constraints significantly beyond what optical or radio surveys can achieve on their own. This document, the 2018 Red Book, provides reference technical specifications, cosmological parameter forecasts, and an overview of relevant systematic effects for the three key surveys and will be regularly updated by the Cosmology Science Working Group in the run up to start of operations and the Key Science Programme of SKA1.
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| 10. |
- Björkman, Maria, 1974-, et al.
(författare)
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The Establishment of Genetic Counselling in Sweden : 1940–1980
- 2017
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Ingår i: History of Human Genetics : Aspects of Its Development and Global Perspectives - Aspects of Its Development and Global Perspectives. - Cham : Springer International Publishing. - 9783319517827 - 9783319517834 ; , s. 339-366
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Bokkapitel (refereegranskat)abstract
- Genetic counselling in Sweden may be traced to the eugenics movementin the early twentieth century. A rudimentary form of what we might call geneticcounselling today was practised within the state governed Medical Board in the1940s and 1950s by the scientific advisor Nils von Hofsten. In the 1950s, Jan ArvidBöök, professor of medical genetics at Uppsala University, realised the importanceof studies in broadly distributed genetic diseases. At the same time as he establisheda modern laboratory for chromosome analysis, he also held genetic counsellingsessions. In B€o€oks’s ways of navigating between the older traditions of eugenicsand the new movement towards individual choice, there are signs of both continuityand discontinuity in relation to the Swedish eugenic project and population policyof the 1930s and 1940s. When the correct chromosome number of man wasdemonstrated in 1956, medical genetics as well as genetic counselling changed inmany ways. New types of diagnosis could be made and new at-risk groups wereidentified. The geneticists trained at B€o€ok’s department contributed significantly totransfer both laboratory research and counselling activities from the academicsetting to the clinic. Development of medical techniques like amniocentesis andprenatal diagnosis further increased the need for more systematised geneticcounselling within the healthcare system.In this chapter we provide an overview of the beginning of genetic counselling inSweden. More specifically, we analyse the ways in which the first three generationsof genetic counsellors constructed their roles as medical and genetic experts and thenorms and values that characterized their counselling activities. We argue that this period was characterised by the development of a professional ethos that, whileemphasising the importance of individual autonomy, also underscored the psychological and socioeconomic benefits of new diagnostic technologies to decrease the number of genetically diseased children. During the period, there was a markedshift from state-controlled eugenics to individual autonomy. However, we want toemphasise that not only did the individual autonomy increase but also the individualresponsibility. At-risk individuals and families were supposed to make informedchoices about their reproduction. And even if the individuals were at the centre,societal interests were clearly present, both as norms and values about whatconstituted a good life and as economic calculations within the healthcare system.
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| 11. |
- Bogolepova, Olga, et al.
(författare)
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New records of brachiopods and crinoids from the Silurian (Wenlock) of the southern Urals, Russia
- 2018
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Ingår i: GFF. - : Informa UK Limited. - 1103-5897 .- 2000-0863.
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Tidskriftsartikel (refereegranskat)abstract
- Crinoids and brachiopods are described from the Silurian Uzyan Formation of the Zilair Zone in the southern Urals. The occurrence of the graptolites Coronograptus praedeubeli suggests a late Homerian (Wenlock) age for the strata. A new disparid crinoid, Cicerocrinus gracilis Donovan sp. nov., is the oldest known member of this genus. It has a long, flexible and homeomorphic column, and a tall bryozoan palaeontology terminology (IBr2) (second primibrachial) axillary. All species of Cicerocrinus described previously have been limited to the Ludlow of the British Isles, Sweden and Estonia, and the Pridoli of Estonia. The poorly preserved brachiopod fauna is represented by small atrypid (Atrypa? sp.) and dalmanellid brachiopods (Levenea? sp.). The reported assemblage generally inhabited deep-water environments.
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| 12. |
- Esseen, Per-Anders, et al.
(författare)
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Factors driving structure of natural and anthropogenic forest edges from temperate to boreal ecosystems
- 2016
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Ingår i: Journal of Vegetation Science. - : Wiley. - 1100-9233 .- 1654-1103. ; 27:3, s. 482-492
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Tidskriftsartikel (refereegranskat)abstract
- Questions What factors control broad-scale variation in edge length and three-dimensional boundary structure for a large region extending across two biomes? What is the difference in structure between natural and anthropogenic edges? Location Temperate and boreal forests across all of Sweden, spanning latitudes 55-69 degrees N. MethodsWe sampled more than 2000 forest edges using line intersect sampling in a monitoring programme (National Inventory of Landscapes in Sweden). We compared edge length, ecosystem attributes (width of adjacent ecosystem, canopy cover, canopy height, patch contrast in canopy height, forest type) and boundary attributes (profile, abruptness, shape) of natural edges (lakeshore, wetland) with anthropogenic edges (clear-cut, agricultural, linear disturbance) in five regions. Results Anthropogenic edges were nearly twice as abundant as natural edges. Length of anthropogenic edges was largest in southern regions, while the abundance of natural edges increased towards the north. Edge types displayed unique spectrums of boundary structures, but abrupt edges dominated, constituting 72% of edge length. Anthropogenic edges were more abrupt than natural edges; wetland edges had the most gradual and sinuous boundaries. Canopy cover, canopy height, patch contrast and forest type depended on region, whereas overall boundary abruptness and shape showed no regional pattern. Patch contrast was related to temperature sum (degree days5 degrees C), suggesting that regional variability can be predicted from climate-controlled forest productivity. Boundary abruptness was coupled with the underlying environmental gradient, land use and forest type, with higher variability in deciduous than in conifer forest. Conclusions Edge origin, land use, climate and tree species are main drivers of broad-scale variability in forest edge structure. Our findings have important implications for developing ecological theory that can explain and predict how different factors affect forest edge structure, and help to understand how land use and climate change affect biodiversity at forest edges.
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| 13. |
- Harper, Anna B., et al.
(författare)
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Improvement of modeling plant responses to low soil moisture in JULESvn4.9 and evaluation against flux tower measurements
- 2021
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Ingår i: Geoscientific Model Development. - : Copernicus GmbH. - 1991-959X .- 1991-9603. ; 14:6, s. 3269-3294
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Tidskriftsartikel (refereegranskat)abstract
- Drought is predicted to increase in the future due to climate change, bringing with it myriad impacts on ecosystems. Plants respond to drier soils by reducing stomatal conductance in order to conserve water and avoid hydraulic damage. Despite the importance of plant drought responses for the global carbon cycle and local and regional climate feedbacks, land surface models are unable to capture observed plant responses to soil moisture stress. We assessed the impact of soil moisture stress on simulated gross primary productivity (GPP) and latent energy flux (LE) in the Joint UK Land Environment Simulator (JULES) vn4.9 on seasonal and annual timescales and evaluated 10 different representations of soil moisture stress in the model. For the default configuration, GPP was more realistic in temperate biome sites than in the tropics or high-latitude (cold-region) sites, while LE was best simulated in temperate and high-latitude (cold) sites. Errors that were not due to soil moisture stress, possibly linked to phenology, contributed to model biases for GPP in tropical savanna and deciduous forest sites. We found that three alternative approaches to calculating soil moisture stress produced more realistic results than the default parameterization for most biomes and climates. All of these involved increasing the number of soil layers from 4 to 14 and the soil depth from 3.0 to 10.8 m. In addition, we found improvements when soil matric potential replaced volumetric water content in the stress equation (the "soil14_psi" experiments), when the critical threshold value for inducing soil moisture stress was reduced ("soil14_p0"), and when plants were able to access soil moisture in deeper soil layers ("soil14_dr&z.ast;2"). For LE, the biases were highest in the default configuration in temperate mixed forests, with overestimation occurring during most of the year. At these sites, reducing soil moisture stress (with the new parameterizations mentioned above) increased LE and increased model biases but improved the simulated seasonal cycle and brought the monthly variance closer to the measured variance of LE. Further evaluation of the reason for the high bias in LE at many of the sites would enable improvements in both carbon and energy fluxes with new parameterizations for soil moisture stress. Increasing the soil depth and plant access to deep soil moisture improved many aspects of the simulations, and we recommend these settings in future work using JULES or as a general way to improve land surface carbon and water fluxes in other models. In addition, using soil matric potential presents the opportunity to include plant functional type-specific parameters to further improve modeled fluxes.
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| 14. |
- Harper, Amber, et al.
(författare)
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Widespread retention of ohnologs in key developmental gene families following whole-genome duplication in arachnopulmonates
- 2021
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Ingår i: G3. - : Oxford University Press. - 2160-1836. ; 11:12
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Tidskriftsartikel (refereegranskat)abstract
- Whole-genome duplications (WGDs) have occurred multiple times during animal evolution, including in lineages leading to vertebrates, teleosts, horseshoe crabs, and arachnopulmonates. These dramatic events initially produce a wealth of new genetic material, generally followed by extensive gene loss. It appears, however, that developmental genes such as homeobox genes, signaling pathway components and microRNAs are frequently retained as duplicates (so-called ohnologs) following WGD. These not only provide the best evidence for WGD, but an opportunity to study its evolutionary consequences. Although these genes are well studied in the context of vertebrate WGD, similar comparisons across the extant arachnopulmonate orders are patchy. We sequenced embryonic transcriptomes from two spider species and two amblypygid species and surveyed three important gene families, Hox, Wnt, and frizzled, across these and 12 existing transcriptomic and genomic resources for chelicerates. We report extensive retention of putative ohnologs, further supporting the ancestral arachnopulmonate WGD. We also found evidence of consistent evolutionary trajectories in Hox and Wnt gene repertoires across three of the six arachnopulmonate orders, with interorder variation in the retention of specific paralogs. We identified variation between major clades in spiders and are better able to reconstruct the chronology of gene duplications and losses in spiders, amblypygids, and scorpions. These insights shed light on the evolution of the developmental toolkit in arachnopulmonates, highlight the importance of the comparative approach within lineages, and provide substantial new transcriptomic data for future study.
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| 15. |
- Henriksson, Richard, et al.
(författare)
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Elevated synaptophysin I in the prefrontal cortex of human chronic alcoholics
- 2008
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Ingår i: Synapse. - : Wiley. - 0887-4476 .- 1098-2396. ; 62:11, s. 829-33
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Tidskriftsartikel (refereegranskat)abstract
- Convergent lines of evidence suggest potentiation of glutamatergic synapses after chronic ethanol exposure, and indicate that the presynaptic effect hereof is on modulators of synaptic strength rather than on executors of glutamate release. To address this hypothesis in the context of ethanol dependence in humans, we used semiquantitative immunoblotting to compare the immunoreactivities of synaptophysin I, syntaxin 1A, synaptosome-associated protein 25, and vesicle-associated membrane protein in the prefrontal and motor cortices between chronic alcoholics and control subjects. We found a region-specific elevation in synaptophysin I immunoreactivity in the prefrontal cortex of alcoholics, but detected no significant differences between the groups in the immunoreactivities of the other three proteins. Our findings are consistent with an effect of repeated ethanol exposure on modulators of synaptic strength but not on executors of glutamate release, and suggest a role for synaptophysin I in the enduring neuroplasticity in the prefrontal cortical glutamate circuitry that is associated with ethanol dependence.
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| 16. |
- Johansson, Sofia, et al.
(författare)
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Dysregulation of cell death machinery in the prefrontal cortex of human alcoholics
- 2009
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Ingår i: International Journal of Neuropsychopharmacology. - 1461-1457 .- 1469-5111. ; 12:1, s. 109-115
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Tidskriftsartikel (refereegranskat)abstract
- In human alcoholics, the cell density is decreased in the prefrontal cortex (PFC) and other brain areas. This may be due to persistent activation of cell death pathways. To address this hypothesis, we examined the status of cell death machinery in the dorsolateral PFC in alcoholics. Protein and mRNA expression levels of several key pro- and anti-apoptotic genes were compared in post-mortem samples of 14 male human alcoholics and 14 male controls. The findings do not support the hypothesis. On the contrary, they show that several components of intrinsic apoptotic pathway are decreased in alcoholics. No differences were evident in the motor cortex, which is less damaged in alcoholics and was analysed for comparison. Thus, cell death mechanisms may be dysregulated by inhibition of intrinsic apoptotic pathway in the PFC in human alcoholics. This inhibition may reflect molecular adaptations that counteract alcohol neurotoxicity in cells that survive after many years of alcohol exposure and withdrawal.
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| 17. |
- Johansson, Sofia, et al.
(författare)
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Validation of endogenous controls for quantitative gene expression analysis : Application on brain cortices of human chronic alcoholics
- 2007
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Ingår i: Brain Research. - : Elsevier BV. - 0006-8993 .- 1872-6240. ; 1132:1, s. 20-8
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Tidskriftsartikel (refereegranskat)abstract
- Real-time PCR is frequently used for gene expression quantification due to its methodological sensitivity and reproducibility. The gene expression is quantified by normalization to one or more reference genes, usually beta-actin (ACTB), glyceraldehyde-3-phosphate dehydrogenase (GAPD) or to ribosomal RNA (18S). However, different environmental or pathological conditions might also influence the expression of normalizing genes, which could severely skew the interpretation of quantitative results. This study evaluates whether 16 genes frequently used as endogenous controls in expression studies, can serve as such for comparison of human brain tissues of chronic alcoholics and control subjects. The prefrontal and motor cortices that are affected differently by chronic alcohol consumption were analyzed. The reference genes that have no or small differences in expression in alcoholics and control subjects, were found to be specific for each region: beta-actin (ACTB) and ribosomal large P0 (RPLP0) for the prefrontal cortex while importin 8 (IPO8) and RNA polymerase II (POLR2A) for the motor cortex. Four out of sixteen analyzed genes demonstrated significant differences in expression between alcoholics and controls: phosphoglycerate kinase (PGK1), hypoxanthine phosphoribosyl transferase (HPRT1) and peptidylprolyl isomerase A (PPIA) in the motor cortex and beta-2-microglobulin (B2M) in the prefrontal cortex. Our study demonstrates the importance of validation of endogenous control genes prior to real-time PCR analysis of human brain tissues. Prescribed and non-prescribed drugs, pathological or environmental conditions along with alcohol abuse may differentially influence expression of reference genes.
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| 18. |
- Kondo, Masayuki, et al.
(författare)
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Are Land-Use Change Emissions in Southeast Asia Decreasing or Increasing?
- 2022
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Ingår i: Global Biogeochemical Cycles. - 0886-6236. ; 36:1
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Tidskriftsartikel (refereegranskat)abstract
- Southeast Asia is a region known for active land-use changes (LUC) over the past 60 years; yet, how trends in net CO2 uptake and release resulting from LUC activities (net LUC flux) have changed through past decades remains uncertain. The level of uncertainty in net LUC flux from process-based models is so high that it cannot be concluded that newer estimates are necessarily more reliable than older ones. Here, we examined net LUC flux estimates of Southeast Asia for the 1980s−2010s from older and newer sets of Dynamic Global Vegetation Model simulations (TRENDY v2 and v7, respectively), and forcing data used for running those simulations, along with two book-keeping estimates (H&N and BLUE). These estimates yielded two contrasting historical LUC transitions, such that TRENDY v2 and H&N showed a transition from increased emissions from the 1980s to 1990s to declining emissions in the 2000s, while TRENDY v7 and BLUE showed the opposite transition. We found that these contrasting transitions originated in the update of LUC forcing data, which reduced the loss of forest area during the 1990s. Further evaluation of remote sensing studies, atmospheric inversions, and the history of forestry and environmental policies in Southeast Asia supported the occurrence of peak emissions in the 1990s and declining thereafter. However, whether LUC emissions continue to decline in Southeast Asia remains uncertain as key processes in recent years, such as conversion of peat forest to oil-palm plantation, are yet to be represented in the forcing data, suggesting a need for further revision.
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| 19. |
- Kosmack Vaara, Elsa
(författare)
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Exploring the Aesthetics of Felt Time
- 2017
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Doktorsavhandling (övrigt vetenskapligt/konstnärligt)abstract
- By building a felt time repertoire, designers can sensitively feed a sense of time into their design work. And this in turn can help them produce an interaction gestalt that is richer, more sensual. My research on this suggests that this is not entirely easy, however. One has to develop a ‘feel’ for time. My research exploration began when I worked on designing a biofeedback data system, Affective Health, struggling with the tension and division between clocktime and the users’ unceasingly changing, ‘felt’ experiences. By turning to artistic practice, of music and culinary arts, I hoped to find keys to this question. Through connecting interaction-design research to these practices, I could start unfolding possibilities of temporal aesthetics in interaction design. I point to a space where designers can expand their understanding of felt time and playfully explore the sense of time that interactive systems and physical materials can deliver. Through the aspects below I point to the importance of being sensitive to felt forms and expressions of time to approach the temporal gestalt in interaction. • Through my research I have strived to move outside clocktime and re-imagine the sense of time that interactive systems deliver.• One part of this space is felt rhythms and how they shape temporal experiences.• In common to those rhythms are the rest and pause moments that form their vitality.• One way of working with rhythm is to see how felt shapes and rhythms of time resonate through the temporal gestalt in interaction.• Aesthetic sensitivity, felt timers, can help us to orient ourselves in time.• By approaching time as plastic: time as a form and shape that we can hold on to, squeeze and weave together, we can start finding tools for remoulding the sense of time in systems, artefacts and services.• Finally, I have worked with aesthetic transformations that can encourage people to start experiencing temporality from new perspectives and with a different approach.
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| 20. |
- Li, Wei, et al.
(författare)
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Land-use and land-cover change carbon emissions between 1901 and 2012 constrained by biomass observations
- 2017
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Ingår i: Biogeosciences. - : Copernicus GmbH. - 1726-4170 .- 1726-4189. ; 14:22, s. 5053-5067
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Tidskriftsartikel (refereegranskat)abstract
- The use of dynamic global vegetation models (DGVMs) to estimate CO2 emissions from land-use and land-cover change (LULCC) offers a new window to account for spatial and temporal details of emissions and for ecosystem processes affected by LULCC. One drawback of LULCC emissions from DGVMs, however, is lack of observation constraint. Here, we propose a new method of using satellite-and inventory-based biomass observations to constrain historical cumulative LULCC emissions (E-LUC(c)) from an ensemble of nine DGVMs based on emerging relationships between simulated vegetation biomass and E-LUC(c). This method is applicable on the global and regional scale. The original DGVM estimates of E-LUC(c) range from 94 to 273 PgC during 1901-2012. After constraining by current biomass observations, we derive a best estimate of 155 +/- 50 PgC (1 sigma Gaussian error). The constrained LULCC emissions are higher than prior DGVM values in tropical regions but significantly lower in North America. Our emergent constraint approach independently verifies the median model estimate by biomass observations, giving support to the use of this estimate in carbon budget assessments. The uncertainty in the constrained Ec LUC is still relatively large because of the uncertainty in the biomass observations, and thus reduced uncertainty in addition to increased accuracy in biomass observations in the future will help improve the constraint. This constraint method can also be applied to evaluate the impact of land-based mitigation activities.
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| 21. |
- Mulligan, Joseph, et al.
(författare)
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Community-responsive adaptation to flooding in Kibera, Kenya
- 2017
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Ingår i: Proceedings of the Institution of Civil Engineers. - 1478-4637 .- 1751-7664.
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Tidskriftsartikel (refereegranskat)abstract
- Much of the world’s existing and future population will live in slums, where the twin trajectories of rapidurbanisation and increasedflooding driven by climate change collide. Few spatial planning policies currently addressthis issue in practice. Poorly planned relocation from slum areas has caused conflict and insecurity, while large-scaleinfrastructural solutions for reducingflood risk are prohibitively expensive. There is a need to consider how localadaptation measures for increasing resilience toflooding can complement other structural and policy measures. Thispaper describes and evaluates autonomous, market-based and public-policy-driven structural and non-structuraladaptation approaches toflooding in Kibera, the largest informal settlement in Nairobi, Kenya. The analysis employsa novel survey data set from 963 households in Kibera and extensive community and institutional stakeholderconsultation. Results of the consultation demonstrate how autonomous adaptation at the household level isdisincentivised by insecure housing tenure, while public-policy-driven approaches are constrained by the lack ofeffective community engagement. Combining the lessons from this analysis with 10 years of experience indeveloping public space and infrastructure projects in Kibera, the paper builds the case for an approach to‘community-responsive adaptation’to urbanflooding that negotiates these limitations
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| 22. |
- Podesta, Manuel Alfredo, et al.
(författare)
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Predictors of hypogammaglobulinemia in ANCA-associated vasculitis after a rituximab-based induction: a multicentre study
- 2023
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Ingår i: Rheumatology. - : OXFORD UNIV PRESS. - 1462-0324 .- 1462-0332. ; 62:8, s. 2850-2854
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Tidskriftsartikel (refereegranskat)abstract
- Objectives Rituximab has become the cornerstone of induction treatment in ANCA-associated vasculitis (AAV). B-cell depletion may increase the risk of hypogammaglobulinemia, potentially leading to severe infections. This study aims to assess factors associated with hypogammaglobulinemia in AAV patients treated with rituximab. Methods This retrospective cohort study included AAV patients treated with rituximab induction in 14 European centres. Severe adverse events (SAEs) were defined as episodes requiring hospitalization or intravenous antibiotics, malignancies, or death. Linear and logistic regression were used to identify predictors of IgG levels and of the risk of hypogammaglobulinemia, defined as IgG <= 7 g/l at 6 months. Results The study included 227 patients. IgG levels at 6 months were lower than baseline (P < 0.001). Patients requiring intravenous antibiotics during the first 6 months had lower IgG levels at 6 months (P = 0.004). Age [beta (95% CI): -0.23 (-0.38, -0.08) per 10 years, P = 0.003], oral glucocorticoid dose at induction [beta (95% CI): -0.37 (-0.51, -0.24) per sqrt-transformed mg prednisone, P < 0.001] and concomitant use of intravenous glucocorticoid pulses [beta (95% CI): -0.88 (-1.73, -0.02), P = 0.044] were associated with IgG levels at 6 months. Hypogammaglobulinemia was identified in 97 (42.7%) patients. In multivariable logistic regression, factors associated with the risk of hypogammaglobulinemia were age [OR (95% CI): 1.46 (1.15, 1.86) per 10 years, P = 0.002] and oral glucocorticoid dose at induction [OR (95% CI): 1.52 (1.23, 1.89) per 10 mg prednisone, P < 0.001]. Conclusions In AAV patients treated with rituximab, hypogammaglobulinemia at 6 months after induction is common, and lower IgG levels are associated with serious infections. The risk of hypogammaglobulinemia in these patients increases with age and higher glucocorticoid doses.
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| 23. |
- Pugh, Thomas A.M., et al.
(författare)
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Understanding the uncertainty in global forest carbon turnover
- 2020
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Ingår i: Biogeosciences. - : Copernicus GmbH. - 1726-4170 .- 1726-4189. ; 17:15, s. 3961-3989
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Tidskriftsartikel (refereegranskat)abstract
- The length of time that carbon remains in forest biomass is one of the largest uncertainties in the global carbon cycle, with both recent historical baselines and future responses to environmental change poorly constrained by available observations. In the absence of large-scale observations, models used for global assessments tend to fall back on simplified assumptions of the turnover rates of biomass and soil carbon pools. In this study, the biomass carbon turnover times calculated by an ensemble of contemporary terrestrial biosphere models (TBMs) are analysed to assess their current capability to accurately estimate biomass carbon turnover times in forests and how these times are anticipated to change in the future. Modelled baseline 1985-2014 global average forest biomass turnover times vary from 12.2 to 23.5 years between TBMs. TBM differences in phenological processes, which control allocation to, and turnover rate of, leaves and fine roots, are as important as tree mortality with regard to explaining the variation in total turnover among TBMs. The different governing mechanisms exhibited by each TBM result in a wide range of plausible turnover time projections for the end of the century. Based on these simulations, it is not possible to draw robust conclusions regarding likely future changes in turnover time, and thus biomass change, for different regions. Both spatial and temporal uncertainty in turnover time are strongly linked to model assumptions concerning plant functional type distributions and their controls. Thirteen model-based hypotheses of controls on turnover time are identified, along with recommendations for pragmatic steps to test them using existing and novel observations. Efforts to resolve uncertainty in turnover time, and thus its impacts on the future evolution of biomass carbon stocks across the world's forests, will need to address both mortality and establishment components of forest demography, as well as allocation of carbon to woody versus non-woody biomass growth.
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| 24. |
- Qin, Yue, et al.
(författare)
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A multi-scale map of cell structure fusing protein images and interactions
- 2021
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Ingår i: Nature. - : Springer Nature. - 0028-0836 .- 1476-4687. ; 600:7889, s. 536-
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Tidskriftsartikel (refereegranskat)abstract
- The cell is a multi-scale structure with modular organization across at least four orders of magnitude(1). Two central approaches for mapping this structure-protein fluorescent imaging and protein biophysical association-each generate extensive datasets, but of distinct qualities and resolutions that are typically treated separately(2,3). Here we integrate immunofluorescence images in the Human Protein Atlas(4) with affinity purifications in BioPlex(5) to create a unified hierarchical map of human cell architecture. Integration is achieved by configuring each approach as a general measure of protein distance, then calibrating the two measures using machine learning. The map, known as the multi-scale integrated cell (MuSIC 1.0), resolves 69 subcellular systems, of which approximately half are to our knowledge undocumented. Accordingly, we perform 134 additional affinity purifications and validate subunit associations for the majority of systems. The map reveals a pre-ribosomal RNA processing assembly and accessory factors, which we show govern rRNA maturation, and functional roles for SRRM1 and FAM120C in chromatin and RPS3A in splicing. By integration across scales, MuSIC increases the resolution of imaging while giving protein interactions a spatial dimension, paving the way to incorporate diverse types of data in proteome-wide cell maps.
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| 25. |
- Villa, Luisa L., et al.
(författare)
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Immunologic responses following administration of a vaccine targeting human papillomavirus Types 6, 11, 16, and 18
- 2006
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Ingår i: Vaccine. - : Elsevier BV. - 1873-2518 .- 0264-410X. ; 24:27-28, s. 5571-5583
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Tidskriftsartikel (refereegranskat)abstract
- Human papillomavirus (HPV) infection causes cervical cancer and genital warts. Young women (1106) were randomized to receive one of three formulations of a quadrivalent HPV (Types 6/11/16/18) L1 virus-like particle (VLP) vaccine or one of two placebo formulations. The goal was to assess vaccine safety and immunogenicity in baseline HPV 6/11/16 or 18-naive and previously infected subjects. All three formulations were highly immunogenic. At Month 2 (postdose 1), among women with vaccine-type antibodies at baseline, vaccine-induced anti-HPV responses were similar to 12- to 26-fold higher than those observed in baseline-naive women, suggesting an anamnestic response. Following an initial, similar sized decline, anti-HPV responses plateaued and remained stable through end-of-study (3.0 years). No vaccine-related serious adverse experiences were reported. (c) 2006 Elsevier Ltd. All rights reserved.
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