| 1. |
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| 2. |
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| 3. |
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| 4. |
- Beal, Jacob, et al.
(författare)
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Robust estimation of bacterial cell count from optical density
- 2020
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Ingår i: Communications Biology. - : Springer Science and Business Media LLC. - 2399-3642. ; 3:1
-
Tidskriftsartikel (refereegranskat)abstract
- Optical density (OD) is widely used to estimate the density of cells in liquid culture, but cannot be compared between instruments without a standardized calibration protocol and is challenging to relate to actual cell count. We address this with an interlaboratory study comparing three simple, low-cost, and highly accessible OD calibration protocols across 244 laboratories, applied to eight strains of constitutive GFP-expressing E. coli. Based on our results, we recommend calibrating OD to estimated cell count using serial dilution of silica microspheres, which produces highly precise calibration (95.5% of residuals <1.2-fold), is easily assessed for quality control, also assesses instrument effective linear range, and can be combined with fluorescence calibration to obtain units of Molecules of Equivalent Fluorescein (MEFL) per cell, allowing direct comparison and data fusion with flow cytometry measurements: in our study, fluorescence per cell measurements showed only a 1.07-fold mean difference between plate reader and flow cytometry data.
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| 5. |
- Fan, Qunping, 1989, et al.
(författare)
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Mechanically Robust All-Polymer Solar Cells from Narrow Band Gap Acceptors with Hetero-Bridging Atoms
- 2020
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Ingår i: Joule. - : Elsevier BV. - 2542-4351. ; 4:3, s. 658-672
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Tidskriftsartikel (refereegranskat)abstract
- We developed three narrow band-gap polymer acceptors PF2-DTC, PF2-DTSi, and PF2-DTGe with different bridging atoms (i.e., C, Si, and Ge). Studies found that such different bridging atoms significantly affect the crystallinity, extinction coefficient, electron mobility of the polymer acceptors, and the morphology and mechanical robustness of related active layers. In all-polymer solar cells (all-PSCs), these polymer acceptors achieved high power conversion efficiencies (PCEs) over 8.0%, while PF2-DTSi obtained the highest PCE of 10.77% due to its improved exciton dissociation, charge transport, and optimized morphology. Moreover, the PF2-DTSi-based active layer showed excellent mechanical robustness with a high toughness value of 9.3 MJ m−3 and a large elongation at a break of 8.6%, which is a great advantage for the practical applications of flexible devices. As a result, the PF2-DTSi-based flexible all-PSC retained >90% of its initial PCE (6.37%) after bending and relaxing 1,200 times at a bending radius of ∼4 mm.
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| 6. |
- Fan, Qunping, 1989, et al.
(författare)
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Weak Makes It Powerful: The Role of Cognate Small Molecules as an Alloy Donor in 2D/1A Ternary Fullerene Solar Cells for Finely Tuned Hierarchical Morphology in Thick Active Layers
- 2020
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Ingår i: Small Methods. - : Wiley. - 2366-9608. ; 4:3
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Tidskriftsartikel (refereegranskat)abstract
- Herein, a novel small molecule donor is first developed, FSM6, which is a cognate molecule to BTR possessing similar molecular structure with comparable optical absorption but different crystallinity. The efficient fullerene-type ternary small molecular solar cells (SMSCs) based on an alloy donor of BTR and FSM6 in a thick film of 250 nm reveal the improved hierarchical phase separation morphology and molecular structural order of ternary active layers with improved crystallinity of the key donor component BTR. Furthermore, FSM6 as the key third component also plays a role of charge transfer accelerator in ternary SMSCs. As a result, the optimal ternary SMSCs based on BTR:FSM6:PC71BM achieve a high power conversion efficiency (PCE) up to 10.21% with the synergistically improved open-circuit voltage of 0.950 V, short-circuit current density of 13.85 mA cm(-2), and fill factor of 77.6%, in comparison with either the binary SMSCs of BTR:PC71BM (PCE = 9.37%) or FSM6:PC71BM (PCE = 8.00%). This work provides a promising methodology to optimize device morphology for high-performance ternary SMSCs by combining two cognate small molecules with similar absorption spectra but different crystallinity as an alloy donor.
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| 7. |
- Fang, Evandro F., et al.
(författare)
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A research agenda for ageing in China in the 21st century (2nd edition): Focusing on basic and translational research, long-term care, policy and social networks.
- 2020
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Ingår i: Ageing Research Reviews. - : Elsevier BV. - 1568-1637. ; 64
-
Tidskriftsartikel (refereegranskat)abstract
- One of the key issues facing public healthcare is the global trend of an increasingly ageing society which continues to present policy makers and caregivers with formidable healthcare and socio-economic challenges. Ageing is the primary contributor to a broad spectrum of chronic disorders all associated with a lower quality of life in the elderly. In 2019, the Chinese population constituted 18 % of the world population, with 164.5 million Chinese citizens aged 65 and above (65+), and 26 million aged 80 or above (80+). China has become an ageing society, and as it continues to age it will continue to exacerbate the burden borne by current family and public healthcare systems. Major healthcare challenges involved with caring for the elderly in China include the management of chronic non-communicable diseases (CNCDs), physical frailty, neurodegenerative diseases, cardiovascular diseases, with emerging challenges such as providing sufficient dental care, combating the rising prevalence of sexually transmitted diseases among nursing home communities, providing support for increased incidences of immune diseases, and the growing necessity to provide palliative care for the elderly. At the governmental level, it is necessary to make long-term strategic plans to respond to the pressures of an ageing society, especially to establish a nationwide, affordable, annual health check system to facilitate early diagnosis and provide access to affordable treatments. China has begun work on several activities to address these issues including the recent completion of the of the Ten-year Health-Care Reform project, the implementation of the Healthy China 2030 Action Plan, and the opening of the National Clinical Research Center for Geriatric Disorders. There are also societal challenges, namely the shift from an extended family system in which the younger provide home care for their elderly family members, to the current trend in which young people are increasingly migrating towards major cities for work, increasing reliance on nursing homes to compensate, especially following the outcomes of the ‘one child policy’ and the ‘empty-nest elderly’ phenomenon. At the individual level, it is important to provide avenues for people to seek and improve their own knowledge of health and disease, to encourage them to seek medical check-ups to prevent/manage illness, and to find ways to promote modifiable health-related behaviors (social activity, exercise, healthy diets, reasonable diet supplements) to enable healthier, happier, longer, and more productive lives in the elderly. Finally, at the technological or treatment level, there is a focus on modern technologies to counteract the negative effects of ageing. Researchers are striving to produce drugs that can mimic the effects of ‘exercising more, eating less’, while other anti-ageing molecules from molecular gerontologists could help to improve ‘healthspan’ in the elderly. Machine learning, ‘Big Data’, and other novel technologies can also be used to monitor disease patterns at the population level and may be used to inform policy design in the future. Collectively, synergies across disciplines on policies, geriatric care, drug development, personal awareness, the use of big data, machine learning and personalized medicine will transform China into a country that enables the most for its elderly, maximizing and celebrating their longevity in the coming decades. This is the 2nd edition of the review paper (Fang EF et al., Ageing Re. Rev. 2015).
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| 8. |
- Aad, G, et al.
(författare)
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- 2015
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swepub:Mat__t
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| 9. |
- Abolfathi, Bela, et al.
(författare)
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The Fourteenth Data Release of the Sloan Digital Sky Survey : First Spectroscopic Data from the Extended Baryon Oscillation Spectroscopic Survey and from the Second Phase of the Apache Point Observatory Galactic Evolution Experiment
- 2018
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Ingår i: Astrophysical Journal Supplement Series. - : IOP Publishing Ltd. - 0067-0049 .- 1538-4365. ; 235:2
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Tidskriftsartikel (refereegranskat)abstract
- The fourth generation of the Sloan Digital Sky Survey (SDSS-IV) has been in operation since 2014 July. This paper describes the second data release from this phase, and the 14th from SDSS overall (making this Data Release Fourteen or DR14). This release makes the data taken by SDSS-IV in its first two years of operation (2014-2016 July) public. Like all previous SDSS releases, DR14 is cumulative, including the most recent reductions and calibrations of all data taken by SDSS since the first phase began operations in 2000. New in DR14 is the first public release of data from the extended Baryon Oscillation Spectroscopic Survey; the first data from the second phase of the Apache Point Observatory (APO) Galactic Evolution Experiment (APOGEE-2), including stellar parameter estimates from an innovative data-driven machine-learning algorithm known as "The Cannon"; and almost twice as many data cubes from the Mapping Nearby Galaxies at APO (MaNGA) survey as were in the previous release (N = 2812 in total). This paper describes the location and format of the publicly available data from the SDSS-IV surveys. We provide references to the important technical papers describing how these data have been taken (both targeting and observation details) and processed for scientific use. The SDSS web site (www.sdss.org) has been updated for this release and provides links to data downloads, as well as tutorials and examples of data use. SDSS-IV is planning to continue to collect astronomical data until 2020 and will be followed by SDSS-V.
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| 10. |
- An, Junghwa, et al.
(författare)
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Permanent Genetic Resources added to Molecular Ecology Resources Database 1 October 2009-30 November 2009
- 2010
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Ingår i: Molecular Ecology Resources. - : Wiley. - 1755-098X .- 1755-0998. ; 10:2, s. 404-408
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Tidskriftsartikel (refereegranskat)abstract
- This article documents the addition of 411 microsatellite marker loci and 15 pairs of Single Nucleotide Polymorphism (SNP) sequencing primers to the Molecular Ecology Resources Database. Loci were developed for the following species: Acanthopagrus schlegeli, Anopheles lesteri, Aspergillus clavatus, Aspergillus flavus, Aspergillus fumigatus, Aspergillus oryzae, Aspergillus terreus, Branchiostoma japonicum, Branchiostoma belcheri, Colias behrii, Coryphopterus personatus, Cynogolssus semilaevis, Cynoglossus semilaevis, Dendrobium officinale, Dendrobium officinale, Dysoxylum malabaricum, Metrioptera roeselii, Myrmeciza exsul, Ochotona thibetana, Neosartorya fischeri, Nothofagus pumilio, Onychodactylus fischeri, Phoenicopterus roseus, Salvia officinalis L., Scylla paramamosain, Silene latifo, Sula sula, and Vulpes vulpes. These loci were cross-tested on the following species: Aspergillus giganteus, Colias pelidne, Colias interior, Colias meadii, Colias eurytheme, Coryphopterus lipernes, Coryphopterus glaucofrenum, Coryphopterus eidolon, Gnatholepis thompsoni, Elacatinus evelynae, Dendrobium loddigesii Dendrobium devonianum, Dysoxylum binectariferum, Nothofagus antarctica, Nothofagus dombeyii, Nothofagus nervosa, Nothofagus obliqua, Sula nebouxii, and Sula variegata. This article also documents the addition of 39 sequencing primer pairs and 15 allele specific primers or probes for Paralithodes camtschaticus.
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| 11. |
- Chen, Zhiwei, et al.
(författare)
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Cross-Device Radio Frequency Fingerprinting Identification Based on Domain Adaptation
- 2024
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Ingår i: IEEE transactions on consumer electronics. - : Institute of Electrical and Electronics Engineers (IEEE). - 0098-3063 .- 1558-4127. ; 70:1, s. 2391-2400
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Tidskriftsartikel (refereegranskat)abstract
- Radio frequency fingerprinting (RFF) is a lightweight authentication technology for resource-limited terminal nodes by exploiting the unique hardware imperfections resulting from the manufacturing process. Previous studies about radio frequency fingerprinting identification (RFFI) mainly concentrate on improving the accuracy which is evaluated by the single receiver device that trains and identifies all the nodes. Due to the mobility of the consumer electronic terminals, these terminal nodes may need to be identified by the different receivers. In this paper, we propose a cross-device radio frequency fingerprinting identification scheme which allows enrolled nodes to be authenticated by different devices. Motivated by the observation that signals collected by different receiver devices have a distribution shift that would violate the basic independent and identically distributed (i.i.d) assumption of supervised learning. Domain adaptation is adopted to improve the accuracy under different receivers, which can align the data captured from different devices and eliminate the distribution shift through the labeled data from one receiver device and unlabeled data from the other device. By this way, the distribution shift from different devices is corrected. Extensive experiment configurations under various Signal-to-noise ratio (SNR) are carried out to demonstrate the performance of domain adaptation with the same model structure. The results indicate that classification accuracy under different devices can be increased by 7%-15% and get a stable accuracy rate higher than 90% by leveraging our proposed cross-device RFFI scheme.
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| 12. |
- Cui, Yong, et al.
(författare)
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Accurate photovoltaic measurement of organic cells for indoor applications
- 2021
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Ingår i: Joule. - : CELL PRESS. - 2542-4351. ; 5:5, s. 1016-1023
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Tidskriftsartikel (övrigt vetenskapligt/konstnärligt)abstract
- Photovoltaic (PV) cells offer a convenient energy source to drive micropower electronic devices for indoor applications. However, it is challenging to measure the power conversion efficiency (PCE) of PV cells under indoor lighting and the PV community lacks a feasible and accurate measurement protocol. Here, we start with the fundamental parameters which determine the PCE, and carefully design a series of experiments to examine the origins which might cause measurement errors for organic PV measurements under indoor lighting. We demonstrate the critical importance of: 1, temporal stability and spatial homogeneity of the light sources, 2, calibration of the spectral irradiance and illuminations of the light sources, 3, the area of the cells (1 cm2 or large cells are preferred), 4, the aperture of the mask (an aperture slightly smaller than the cell area is preferred), and 5, stray lights from the measurement environment. Based on these careful investigations, we suggest a feasible measurement method, by which accurate measurement of the indoor PV efficiency is made possible. Our study will promote the healthy development of indoor PV technology for practical applications.
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| 13. |
- Cui, Yong, et al.
(författare)
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Over 16% efficiency organic photovoltaic cells enabled by a chlorinated acceptor with increased open-circuit voltages
- 2019
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Ingår i: Nature Communications. - : NATURE PUBLISHING GROUP. - 2041-1723. ; 10
-
Tidskriftsartikel (refereegranskat)abstract
- Broadening the optical absorption of organic photovoltaic (OPV) materials by enhancing the intramolecular push-pull effect is a general and effective method to improve the power conversion efficiencies of OPV cells. However, in terms of the electron acceptors, the most common molecular design strategy of halogenation usually results in down-shifted molecular energy levels, thereby leading to decreased open-circuit voltages in the devices. Herein, we report a chlorinated non-fullerene acceptor, which exhibits an extended optical absorption and meanwhile displays a higher voltage than its fluorinated counterpart in the devices. This unexpected phenomenon can be ascribed to the reduced non-radiative energy loss (0.206 eV). Due to the simultaneously improved short-circuit current density and open-circuit voltage, a high efficiency of 16.5% is achieved. This study demonstrates that finely tuning the OPV materials to reduce the bandgap-voltage offset has great potential for boosting the efficiency.
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| 14. |
- Cui, Yong, et al.
(författare)
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Single-Junction Organic Photovoltaic Cells with Approaching 18% Efficiency
- 2020
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Ingår i: Advanced Materials. - : WILEY-V C H VERLAG GMBH. - 0935-9648 .- 1521-4095. ; 32:19
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Tidskriftsartikel (refereegranskat)abstract
- Optimizing the molecular structures of organic photovoltaic (OPV) materials is one of the most effective methods to boost power conversion efficiencies (PCEs). For an excellent molecular system with a certain conjugated skeleton, fine tuning the alky chains is of considerable significance to fully explore its photovoltaic potential. In this work, the optimization of alkyl chains is performed on a chlorinated nonfullerene acceptor (NFA) named BTP-4Cl-BO (a Y6 derivative) and very impressive photovoltaic parameters in OPV cells are obtained. To get more ordered intermolecular packing, the n-undecyl is shortened at the edge of BTP-eC11 to n-nonyl and n-heptyl. As a result, the NFAs of BTP-eC9 and BTP-eC7 are synthesized. The BTP-eC7 shows relatively poor solubility and thus limits its application in device fabrication. Fortunately, the BTP-eC9 possesses good solubility and, at the same time, enhanced electron transport property than BTP-eC11. Significantly, due to the simultaneously enhanced short-circuit current density and fill factor, the BTP-eC9-based single-junction OPV cells record a maximum PCE of 17.8% and get a certified value of 17.3%. These results demonstrate that minimizing the alkyl chains to get suitable solubility and enhanced intermolecular packing has a great potential in further improving its photovoltaic performance.
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| 15. |
- Dong, Jianbo, et al.
(författare)
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Venice: Exploring Server Architectures for Effective Resource Sharing
- 2016
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Ingår i: Proceedings - International Symposium on High-Performance Computer Architecture. - 1530-0897. - 9781467392112 ; 2016-April, s. 507-518
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Konferensbidrag (refereegranskat)abstract
- Consolidated server racks are quickly becoming the backbone of IT infrastructure for science, engineering, and business, alike. These servers are still largely built and organized as when they were distributed, individual entities. Given that many fields increasingly rely on analytics of huge datasets, it makes sense to support flexible resource utilization across servers to improve cost-effectiveness and performance. We introduce Venice, a family of data-center server architectures that builds a strong communication substrate as a first-class resource for server chips. Venice provides a diverse set of resource-joining mechanisms that enables user programs to efficiently leverage non-local resources.To better understand the implications of design decisionsabout system support for resource sharing we have constructed a hardware prototype that allows us to more accurately measure end-to-end performance of at-scale applications and to explore tradeoffs among performance, power, and resource-sharing transparency. We present results from our initial studies analyzing these tradeoffs when sharing memory, accelerators, or NICs. We find that it is particularly important to reduce or hide latency, that data-sharing access patterns should match the features of the communication channels employed, and that inter-channel collaboration can be exploited for better performance.
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| 16. |
- Fan, Qunping, et al.
(författare)
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10.13% Efficiency All-Polymer Solar Cells Enabled by Improving the Optical Absorption of Polymer Acceptors
- 2020
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Ingår i: Solar RRL. - : Wiley. - 2367-198X. ; 4:6
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Tidskriftsartikel (refereegranskat)abstract
- The limited light absorption capacity for most polymer acceptors hinders the improvement of the power conversion efficiency (PCE) of all-polymer solar cells (all-PSCs). Herein, by simultaneously increasing the conjugation of the acceptor unit and enhancing the electron-donating ability of the donor unit, a novel narrow-bandgap polymer acceptor PF3-DTCO based on an A–D–A-structured acceptor unit ITIC16 and a carbon–oxygen (C–O)-bridged donor unit DTCO is developed. The extended conjugation of the acceptor units from IDIC16 to ITIC16 results in a red-shifted absorption spectrum and improved absorption coefficient without significant reduction of the lowest unoccupied molecular orbital energy level. Moreover, in addition to further broadening the absorption spectrum by the enhanced intramolecular charge transfer effect, the introduction of C–O bridges into the donor unit improves the absorption coefficient and electron mobility, as well as optimizes the morphology and molecular order of active layers. As a result, the PF3-DTCO achieves a higher PCE of 10.13% with a higher short-circuit current density (Jsc) of 15.75 mA cm−2 in all-PSCs compared with its original polymer acceptor PF2-DTC (PCE = 8.95% and Jsc = 13.82 mA cm−2). Herein, a promising method is provided to construct high-performance polymer acceptors with excellent optical absorption for efficient all-PSCs.
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| 17. |
- Fan, Qunping, 1989, et al.
(författare)
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A Non-Conjugated Polymer Acceptor for Efficient and Thermally Stable All-Polymer Solar Cells
- 2020
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Ingår i: Angewandte Chemie - International Edition. - : Wiley. - 1433-7851 .- 1521-3773. ; 59:45, s. 19835-19840
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Tidskriftsartikel (refereegranskat)abstract
- A non-conjugated polymer acceptor PF1-TS4 was firstly synthesized by embedding a thioalkyl segment in the mainchain, which shows excellent photophysical properties on par with a fully conjugated polymer, with a low optical band gap of 1.58 eV and a high absorption coefficient >105 cm−1, a high LUMO level of −3.89 eV, and suitable crystallinity. Matched with the polymer donor PM6, the PF1-TS4-based all-PSC achieved a power conversion efficiency (PCE) of 8.63 %, which is ≈45 % higher than that of a device based on the small molecule acceptor counterpart IDIC16. Moreover, the PF1-TS4-based all-PSC has good thermal stability with ≈70 % of its initial PCE retained after being stored at 85 °C for 180 h, while the IDIC16-based device only retained ≈50 % of its initial PCE when stored at 85 °C for only 18 h. Our work provides a new strategy to develop efficient polymer acceptor materials by linkage of conjugated units with non-conjugated thioalkyl segments.
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| 18. |
- Fan, Qunping, 1989, et al.
(författare)
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High-performance all-polymer solar cells enabled by a novel low bandgap non-fully conjugated polymer acceptor
- 2021
-
Ingår i: Science in China Series B. - : Springer Nature. - 1674-7291 .- 1869-1870. ; 64, s. 1380-1388
-
Tidskriftsartikel (refereegranskat)abstract
- Anon-fully conjugated polymer as a new class of acceptor materials has shown some advantages over its small molecular counterpart when used in photoactive layers for all-polymer solar cells (all-PSCs), despite a low power conversion efficiency (PCE) caused by its narrow absorption spectra. Herein, a novel non-fully conjugated polymer acceptor PFY-2TS with a low bandgap of similar to 1.40 eV was developed, via polymerizing a large pi-fused small molecule acceptor (SMA) building block (namely YBO) with a non-conjugated thioalkyl linkage. Compared with its precursor YBO, PFY-2TS retains a similar low bandgap but a higher LUMO level. Moreover, compared with the structural analog of YBO-based fully conjugated polymer acceptor PFY-DTC, PFY-2TS shows similar absorption spectrum and electron mobility, but significantly different molecular crystallinity and aggregation properties, which results in optimal blend morphology with a polymer donor PBDB-T and better device physical processes in all-PSCs. As a result, PFY-2TS-based all-PSCs achieved a PCE of 12.31% with a small energy loss of 0.56 eV enabled by the reduced non-radiative energy loss (0.24 eV), which is better than that of 11.08% for the PFY-DTC-based ones. Our work clearly demonstrated that non-fully conjugated polymers as a new class of acceptor materials are very promising for the development of high-performance all-PSCs.
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| 19. |
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| 20. |
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| 21. |
- Hou, Jie, et al.
(författare)
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Subspace Hammerstein Model Identification under Periodic Disturbance
- 2018
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Ingår i: IFAC-PapersOnLine. - : Elsevier B.V.. - 2405-8963.
-
Konferensbidrag (refereegranskat)abstract
- In this paper, a subspace identification method is proposed for Hammerstein systems under periodic disturbance. By using the linear superposition principle to decompose the periodic disturbance response from the deterministic system response, an orthogonal projection is established to eliminate the disturbance effect. The unknown disturbance period can be estimated by defining an objective function of output prediction error for minimization. Correspondingly, a singular value decomposition (SVD) based algorithm is given to estimate the observability matrix and the lower triangular block-Toeplitz matrix. The state matrices A and C are subsequently retrieved from the estimated observability matrix via a shift-invariant algorithm, while the input matrix B and the nonlinear input function parameters are retrieved from the estimated lower triangular block-Toeplitz matrix by an SVD approach. Consistent estimation of the observability matrix and the lower triangular block-Toeplitz matrix is analyzed. An illustrative example is shown to demonstrate the effectiveness of the proposed identification method.
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| 22. |
- Iguchi, Takamichi, et al.
(författare)
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WRF-SBM Simulations of Melting-Layer Structure in Mixed-Phase Precipitation Events Observed during LPVEx
- 2014
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Ingår i: Journal of Applied Meteorology and Climatology. - 1558-8424. ; 53:12, s. 2710-2731
-
Tidskriftsartikel (refereegranskat)abstract
- Two mixed-phase precipitation events were observed on 21 September and 20 October 2010 over the southern part of Finland during the Light Precipitation Validation Experiment (LPVEx). These events have been simulated using the Weather Research and Forecasting Model coupled with spectral bin microphysics (WRF-SBM). The detailed ice-melting scheme with prognosis of the liquid water fraction during melting enables explicit simulation of microphysical properties in the melting layer. First, the simulations have been compared with C-band 3D radar measurements for the purpose of evaluating the overall profiles of cloud and precipitation. The simulation has some artificial convective patterns and errors in the forecast displacement of the precipitation system. The overall overestimation of reflectivity is consistent with a bias toward the range characterized by large-diameter droplets in the surface drop size distribution. Second, the structure of the melting bands has been evaluated against vertically pointing K-band radar measurements. A peak in reflectivity and a gradual change in Doppler velocity are observed and similarly simulated in the common temperature range from approximately 0 degrees to 3 degrees C. The effectiveness of the time-dependent melting scheme has been justified by intercomparison with a corresponding simulation using an instantaneous melting scheme. A weakness of the new melting scheme is that melting particles having high liquid water fractions on the order of 80%-90% cannot be simulated. This situation may cause underestimation of radar reflectivity in the melting layer because of the assumptions of melting-particle structure used to calculate the scattering properties.
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| 23. |
- Jhun, Mina-A, et al.
(författare)
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A multi-ethnic epigenome-wide association study of leukocyte DNA methylation and blood lipids
- 2021
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Ingår i: Nature Communications. - : Springer Nature. - 2041-1723. ; 12:1
-
Tidskriftsartikel (refereegranskat)abstract
- Here we examine the association between DNA methylation in circulating leukocytes and blood lipids in a multi-ethnic sample of 16,265 subjects. We identify 148, 35, and 4 novel associations among Europeans, African Americans, and Hispanics, respectively, and an additional 186 novel associations through a trans-ethnic meta-analysis. We observe a high concordance in the direction of effects across racial/ethnic groups, a high correlation of effect sizes between high-density lipoprotein and triglycerides, a modest overlap of associations with epigenome-wide association studies of other cardio-metabolic traits, and a largely non-overlap with lipid loci identified to date through genome-wide association studies. Thirty CpGs reached significance in at least 2 racial/ethnic groups including 7 that showed association with the expression of an annotated gene. CpGs annotated to CPT1A showed evidence of being influenced by triglycerides levels. DNA methylation levels of circulating leukocytes show robust and consistent association with blood lipid levels across multiple racial/ethnic groups. Abnormal blood lipid levels are important risk factors for cardiovascular and other various diseases. Here the authors conduct a large-scale multi-ethnic epigenome-wide association study combined with epigenetic (cis-QTL and eQTM) data, and identify CpG-lipid traits associations that are specific to or common across racial/ethnic groups.
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| 24. |
- Jiang, Tao, et al.
(författare)
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Adapting Memory Hierarchies for Emerging Datacenter Interconnects
- 2015
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Ingår i: Journal of Computer Science and Technology. - : Springer Science and Business Media LLC. - 1860-4749 .- 1000-9000. ; 30:1, s. 97-109
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Tidskriftsartikel (refereegranskat)abstract
- Efficient resource utilization requires that emerging datacenter interconnects support both high performance communication and efficient remote resource sharing. These goals require that the network be more tightly coupled with the CPU chips. Designing a new interconnection technology thus requires considering not only the interconnection itself, but also the design of the processors that will rely on it. In this paper, we study memory hierarchy implications for the design of high-speed datacenter interconnects particularly as they affect remote memory access and we use PCIe as the vehicle for our investigations. To that end, we build three complementary platforms: a PCIe-interconnected prototype server with which we measure and analyze current bottlenecks; a software simulator that lets us model microarchitectural and cache hierarchy changes; and an FPGA prototype system with a streamlined switchless customized protocol Thunder with which we study hardware optimizations outside the processor. We highlight several architectural modifications to better support remote memory access and communication, and quantify their impact and limitations.
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| 25. |
- Jiang, Tao, et al.
(författare)
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Understanding the behavior of in-memory computing workloads
- 2014
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Ingår i: IISWC 2014 - IEEE International Symposium on Workload Characterization. - 9781479964536 ; , s. 22-30
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Konferensbidrag (refereegranskat)abstract
- © 2014 IEEE. The increasing demands of big data applications have led researchers and practitioners to turn to in-memory computing to speed processing. For instance, the Apache Spark framework stores intermediate results in memory to deliver good performance on iterative machine learning and interactive data analysis tasks. To the best of our knowledge, though, little work has been done to understand Spark's architectural and microarchitectural behaviors. Furthermore, although conventional commodity processors have been well optimized for traditional desktops and HPC, their effectiveness for Spark workloads remains to be studied. To shed some light on the effectiveness of conventional generalpurpose processors on Spark workloads, we study their behavior in comparison to those of Hadoop, CloudSuite, SPEC CPU2006, TPC-C, and DesktopCloud. We evaluate the benchmarks on a 17-node Xeon cluster. Our performance results reveal that Spark workloads have significantly different characteristics from Hadoop and traditional HPC benchmarks. At the system level, Spark workloads have good memory bandwidth utilization (up to 50%), stable memory accesses, and high disk IO request frequency (200 per second). At the microarchitectural level, the cache and TLB are effective for Spark workloads, but the L2 cache miss rate is high. We hope this work yields insights for chip and datacenter system designers.
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