| 1. |
- Nordanstig, Annika, 1974, et al.
(författare)
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EndoVAscular treatment and ThRombolysis for Ischemic Stroke Patients (EVA-TRISP) registry: basis and methodology of a pan-European prospective ischaemic stroke revascularisation treatment registry.
- 2021
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Ingår i: BMJ open. - : BMJ. - 2044-6055. ; 11:8
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Tidskriftsartikel (refereegranskat)abstract
- The Thrombolysis in Ischemic Stroke Patients (TRISP) collaboration was a concerted effort initiated in 2010 with the purpose to address relevant research questions about the effectiveness and safety of intravenous thrombolysis (IVT). The collaboration also aims to prospectively collect data on patients undergoing endovascular treatment (EVT) and hence the name of the collaboration was changed from TRISP to EVA-TRISP. The methodology of the former TRISP registry for patients treated with IVT has already been published. This paper focuses on describing the EVT part of the registry.All centres committed to collecting predefined variables on consecutive patients prospectively. We aim for accuracy and completeness of the data and to adapt local databases to investigate novel research questions. Herein, we introduce the methodology of a recently constructed academic investigator-initiated open collaboration EVT registry built as an extension of an existing IVT registry in patients with acute ischaemic stroke (AIS).Currently, the EVA-TRISP network includes 20 stroke centres with considerable expertise in EVT and maintenance of high-quality hospital-based registries. Following several successful randomised controlled trials (RCTs), many important clinical questions remain unanswered in the (EVT) field and some of them will unlikely be investigated in future RCTs. Prospective registries with high-quality data on EVT-treated patients may help answering some of these unanswered issues, especially on safety and efficacy of EVT in specific patient subgroups.This collaborative effort aims at addressing clinically important questions on safety and efficacy of EVT in conditions not covered by RCTs. The TRISP registry generated substantial novel data supporting stroke physicians in their daily decision making considering IVT candidate patients. While providing observational data on EVT in daily clinical practice, our future findings may likewise be hypothesis generating for future research as well as for quality improvement (on EVT). The collaboration welcomes participation of further centres willing to fulfill the commitment and the outlined requirements.
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| 2. |
- Bergman, Annika, et al.
(författare)
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No germline mutations in supposed tumour suppressor genes SAFB1 and SAFB2 in familial breast cancer with linkage to 19p.
- 2008
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Ingår i: BMC Medical Genetics. - : BioMed Central. - 1471-2350. ; 9
-
Tidskriftsartikel (refereegranskat)abstract
- BACKGROUND: The scaffold attachment factor B1 and B2 genes, SAFB1/SAFB2 (both located on chromosome 19p13.3) have recently been suggested as tumour suppressor genes involved in breast cancer development. The assumption was based on functional properties of the two genes and loss of heterozygosity of intragenic markers in breast tumours further strengthened the postulated hypothesis. In addition, linkage studies in Swedish breast cancer families also indicate the presence of a susceptibility gene for breast cancer at the 19p locus. Somatic mutations in SAFB1/SAFB2 have been detected in breast tumours, but to our knowledge no studies on germline mutations have been reported. In this study we investigated the possible involvement of SAFB1/SAFB2 on familiar breast cancer by inherited mutations in either of the two genes.RESULTS: Mutation analysis in families showing linkage to the SAFB1/2 locus was performed by DNA sequencing. The complete coding sequence of the two genes SAFB1 and SAFB2 was analyzed in germline DNA from 31 affected women. No missense or frameshift mutations were detected. One polymorphism was found in SAFB1 and eight polymorphisms were detected in SAFB2. MLPA-anlysis showed that both alleles of the two genes were preserved which excludes gene inactivation by large deletions.CONCLUSION: SAFB1 and SAFB2 are not likely to be causative of the hereditary breast cancer syndrome in west Swedish breast cancer families.
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| 3. |
- Bryllert, Tomas, 1974, et al.
(författare)
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220-GHz imaging radar with 1 Hz frame rate using an array of homodyne transceivers
- 2018
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Ingår i: Proceedings of SPIE - The International Society for Optical Engineering. - : SPIE. - 0277-786X .- 1996-756X. ; 10634
-
Konferensbidrag (refereegranskat)abstract
- We present a 220 GHz imaging radar prototype that has been developed in the European Defense Agency (EDA) project TIPPSI. The purpose of the development was to demonstrate short-range high-resolution 3D imaging for security applications at checkpoints, and to guide the development of stand-off real-time millimeter wave and sub-millimeter wave imaging systems for detection of larger objects at greater distances. An additional goal was to experimentally verify simulation techniques for active (sub)-mmw imaging systems, the verified simulation techniques can then be used to explore different system architectures. The 220 GHz imaging radar prototype consist of a flexible, mechanically scanned optical system that can support linear arrays of transmit/receive (TxRx) units up to 150 mm in length. The optical system is divided into two parts: A compact Dragonian system including the mechanical scanner that can be used as a stand-alone imager at reduced target distance and resolution, and a confocal system that can be added to achieve the full resolution of 1 cm x 1 cm x 1 cm at 4.5 m target distance. The field of view of the full resolution system is 70 cm x 70 cm. The front-end is currently populated by 4 TxRx units that are sparsely distributed along the 150 mm focal plane. The TxRx units operate in frequency modulated continuous wave (FMCW) mode and have a bandwidth of 24 GHz. Each TxRx unit use a single horn antenna and the transmit- and receive signals are generated and received using the same circuits which avoids the need of a duplexer. We will demonstrate high resolution 3D videos taken at 1 Hz frame rate and compare the individual images with simulations using electromagnetic simulators and character/clothes animation.
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| 4. |
- Byström, Pär, 1974-, et al.
(författare)
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Warming decrease fish population densities and biomass
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Annan publikation (övrigt vetenskapligt/konstnärligt)abstract
- Temperature impact all biota and ecosystems through its direct effect on the vital rates of primary producers and consumers. Still, how these changes in rates translates through ecosystem feed backs to the population level of top consumers are poorly understood. Here, we studied effects of temperature increase (+ 3 ̊C during ice free season) on fish population dynamics in a replicated large scale pond ecosystem experiment over 3 years. Increased temperature had no significant effect on whole ecosystem gross primary production while top down effects of warming on intermediate consumers changed from negative to positive due to negative effects of warming on fish population abundance. Total fish density and biomass and abundance of both mature and old fish decreased with warming, while proportion of young fish increased, with warming. The effects of warming on fish population demographics were likely due to that temperature increased cohort competition and fish energy requirements relative to resource production. Our results suggest that global warming may increase competition, favor young individuals and overall decrease fish population densities and biomass.
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| 5. |
- Hedström, Per, 1974-, et al.
(författare)
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Brownification increases winter mortality in fish
- 2017
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Ingår i: Oecologia. - : Springer Science and Business Media LLC. - 0029-8549 .- 1432-1939. ; 183:2, s. 587-595
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Tidskriftsartikel (refereegranskat)abstract
- In northernclimateswinter is a bottleneck for many organisms. Low light and resource availability constrain individual foraging rates,potentially leading tostarvation and increasedmortality.Increasinginput of humic substances to aquatic ecosystems causesbrownification of water and hence a further decreaseof light availability,which may lead tofurther decreased foraging ratesand starvation mortality during winter.To test this hypothesis, we measured the effectsof experimentally increased humicwaterinput on consumption and survival of young-of-the-year (YOY) three-spined stickleback (Gasterosteus aculeatus) over winterin largeoutdoor enclosures. Population densitieswereestimated in autumn andthefollowing springand food availabilityand consumptionwere monitoredoverwinter. As hypothesized,mortality washigher underhumic(76%)as compared to ambientconditions (64%).Also, body condition and ingested prey biomass werelower under humic conditionseven thoughresource availability wasnotlower under humic conditions. Light conditions were significantly poorer under humic conditions. This suggeststhat increased mortality and decreased body condition and ingested prey biomasswasnot due to decreased resource availability but due todecreasedsearch efficiencyin this visual feeding consumer. Increased future brownification of aquatic systems may therefore negatively affect both recruitment and densities of fish.
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| 6. |
- Hedström, Per, 1974-, et al.
(författare)
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Population and size dependent responses in fish production to climate change
-
Annan publikation (övrigt vetenskapligt/konstnärligt)abstract
- Climate change is predicted to increase water temperatures and export of terrestrial dissolved matter (TDOM) to aquatic ecosystems with concomitant effects on ecosystem productivity and production of consumers at the top of the food web. Here we study how increased level of TDOM and temperature alone or in combination affect benthic and pelagic primary production and biomass production of fish in replicated large scale outdoor pond experiment. We increased temperature (+3 ̊C) and TDOM concentrations (×2.5) using natural high TDOM water from a small creek and used naturally reproducing three-spine sticklebacks (Gasterosteus aculeatus) populations as model fish species. Gross primary production (GPP) was similar to ambient control conditions in all treatments although increased TDOM concentrations deceased benthic but stimulated pelagic GPP, presumably as a result of decreased light availability and increased nutrient availability, respectively. The production of young-of-the-year (YOY), older, and total fish population were negatively affected by warming, whereas increased TDOM caused decreased YOY and total fish production. Effect of temperature on fish production were likely a result of increased metabolic cost in relation to resource production and intake rates whereas the negative effect of TDOM on fish production was likely a result of decreasing benthic resource production. However, the combined effect on fish production of warming and TDOM was only intermediate compared to individual treatments. Our study suggest climate change will lead to decreased fish production and that the effect may be most pronounced in clear systems dominated by benthic GPP .
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| 7. |
- Karlsson, Jan, 1974-, et al.
(författare)
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Ice-melt period dominates annual carbon dioxide evasion from clear-water Arctic lakes
- 2024
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Ingår i: Limnology and Oceanography Letters. - : John Wiley & Sons. - 2378-2242. ; 9:2, s. 112-118
-
Tidskriftsartikel (refereegranskat)abstract
- Current estimates of carbon dioxide (CO2) evasion from Arctic lakes are highly uncertain because few studies integrate seasonal variability, specifically evasion during spring ice-melt. We quantified annual CO2 evasion for 14 clear-water Arctic lakes in Northern Sweden through mass balance (ice-melt period) and high-frequency loggers (open-water period). On average, 80% (SD: ± 18) of annual CO2 evasion occurred within 10 d following ice-melt. The contribution of the ice-melt period to annual CO2 evasion was high compared to earlier studies of Arctic lakes (47% ± 32%). Across all lakes, the proportion of ice-melt : annual CO2 evasion was negatively related to the dissolved organic carbon concentration and positively related to the mean depth of the lakes. The results emphasize the need for measurements of CO2 exchange at ice-melt to accurately quantify CO2 evasion from Arctic lakes.
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| 8. |
- Larsson, Alice, et al.
(författare)
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Do patients with large vessel occlusion ischemic stroke harboring prestroke disability benefit from thrombectomy?
- 2020
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Ingår i: Journal of Neurology. - : Springer Science and Business Media LLC. - 0340-5354 .- 1432-1459. ; 267, s. 2667-2674
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Tidskriftsartikel (refereegranskat)abstract
- Objectives: Evidence of endovascular treatment (EVT) for acute large vessel occlusion (LVO) ischemic stroke in patients harboring substantial prestroke disability is lacking due to their exclusion from randomized trials. Here, we used routine care observational data to compare outcomes in patients with and without prestroke disability receiving EVT for LVO ischemic stroke. Methods: Consecutive patients undergoing EVT for acute LVO ischemic stroke at the Sahlgrenska University Hospital from January 1st, 2015 to March 31st, 2018 were registered in the Sahlgrenska Stroke Recanalization Registry. Pre- and poststroke functional levels were assessed by the modified Rankin Scale (mRS). Outcomes were recanalization rate (mTICI = 2b/3), symptomatic intracranial hemorrhage [sICH], complications during hospital stay, and return to prestroke functional level and mortality at 3 months. Results: Among 591 patients, 90 had prestroke disability (mRS ≥ 3). The latter group were older, more often female, had more comorbidities and higher NIHSS scores before intervention compared to patients without prestroke disability. Recanalization rates (80.0% vs 85.0%, p = 0.211), sICH (2.2% vs 6.3% p = 0.086) and the proportion of patients returning to prestroke functional level (22.7% vs 14.8% p = 0.062) did not significantly differ between those with and without prestroke disability. Patients with prestroke disability had higher complication rates during hospital stay (55.2% vs 40.1% p < 0.01) and mortality at 3 months (48.9% vs 24.3% p < 0.001). Conclusion: One of five with prestroke disability treated with thrombectomy for a LVO ischemic stroke returned to their prestroke functional level. However, compared to patients without prestroke disability, mortality at 3 months was higher. © 2020, The Author(s).
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| 9. |
- Pascual, Didac, et al.
(författare)
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The missing pieces for better future predictions in subarctic ecosystems: A Torneträsk case study
- 2021
-
Ingår i: Ambio. - : Springer. - 0044-7447 .- 1654-7209. ; 50:2, s. 375-392
-
Forskningsöversikt (refereegranskat)abstract
- Arctic and subarctic ecosystems are experiencing substantial changes in hydrology, vegetation, permafrost conditions, and carbon cycling, in response to climatic change and other anthropogenic drivers, and these changes are likely to continue over this century. The total magnitude of these changes results from multiple interactions among these drivers. Field measurements can address the overall responses to different changing drivers, but are less capable of quantifying the interactions among them. Currently, a comprehensive assessment of the drivers of ecosystem changes, and the magnitude of their direct and indirect impacts on subarctic ecosystems, is missing. The Torneträsk area, in the Swedish subarctic, has an unrivalled history of environmental observation over 100 years, and is one of the most studied sites in the Arctic. In this study, we summarize and rank the drivers of ecosystem change in the Torneträsk area, and propose research priorities identified, by expert assessment, to improve predictions of ecosystem changes. The research priorities identified include understanding impacts on ecosystems brought on by altered frequency and intensity of winter warming events, evapotranspiration rates, rainfall, duration of snow cover and lake-ice, changed soil moisture, and droughts. This case study can help us understand the ongoing ecosystem changes occurring in the Torneträsk area, and contribute to improve predictions of future ecosystem changes at a larger scale. This understanding will provide the basis for the future mitigation and adaptation plans needed in a changing climate.
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| 10. |
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| 11. |
- Axelsson, Jonas, 1974-, et al.
(författare)
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Arbeiderkollektivet i dag : Replikasjon og teoretisk utvikling
- 2016
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Ingår i: Tidsskrift for samfunnsforskning. - : Universitetsforlaget AS,Scandinavian University Press. - 0040-716X .- 1504-291X. ; 57:2, s. 105-134
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Tidskriftsartikel (refereegranskat)abstract
- Lysgaards teori om arbeiderkollektivet er fortsatt en innflytelsesrik klassiker i skandinavisk arbeidslivsforskning. Studien ble gjennomført i en masse- og papirfabrikk på 1950-tallet, og vi har returnert til fabrikken for å finne ut hva som har skjedd med arbeiderkollektivet. Gjennom observasjoner på arbeidsplassen og intervjuer med arbeidere, ingeniører og sjefer, i tillegg til at vi har hatt tilgang til data fra 1950- og 1980-tallet, kan vi kartlegge den teknologiske og arbeidsorganisatoriske utviklingen og dens påvirkning på arbeiderkollektivet. På basis av dette foreslår vi to typer endringer av Lysgaards teori. Den ene er å dele opp det Lysgaard omtaler som det teknisk/økonomiske system i to relativt autonome system, det tekniske respektive det økonomiske systemet. Den andre er å analysere hvordan kollektivet har infiltrert det tekniske, men ikke det økonomiske systemet.
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| 12. |
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| 13. |
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| 14. |
- Axelsson, Jonas, 1974-, et al.
(författare)
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Collective mobilization in changing conditions : Worker collectivity in a turbulent age
- 2019. - 1
-
Bok (refereegranskat)abstract
- This book presents the first published account in English of Sverre Lysgaard's theory of the ‘worker collectivity’ – a theory of an informal protective organisation among subordinate employees, which so far has been unknown outside Scandinavia.Lysgaard’s theory espouses that workers collectively form a buffer against management to protect themselves from the technical/economic power, which controls their working lives. The authors have returned to the same Norwegian factory Lysgaard studied in the 1950s to carry out ethnographic fieldwork in the 1980s and 2010s, and investigate the changing nature of the production, labour processes and management strategies. Through analysis that extends over 50 years of factory life, this research documents shifting power relations between workers and employers during times of changing institutional structures, globalisation, and worker solidarity. A revised version of the theory is also presented as an answer to some of the uncovered deficiencies in the original framework. The book will be of interest to students and scholars of the sociology of work, labour studies, business management and organisation studies.
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| 15. |
- Axelsson, Jonas, 1974-
(författare)
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Dominanser : En utveckling av den realistiska livsformsteorin
- 2009
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Doktorsavhandling (övrigt vetenskapligt/konstnärligt)abstract
- The present dissertation develops a specific theory about everyday life called realist life mode theory. This theory is based on critical realism and consists of "work", "love" and "life mode" as central concepts. The background of the theory is the Danish life mode analysis developed by Thomas Højrup in the 1980:s. The aim of the study is to develop the central clusters of concepts in the realist life mode theory - i. e. "work", "love", "life mode" in a theoretical way. These concepts are seen as clusters since other related concepts are developed in connection to the concepts mentioned above. In connection to work I also discuss the concepts of "labour power", "labour receptor", and "work form"; in relation to love, "love power", "love receptor" and "love form" are discussed. And "life mode" is connected with the concept of "everyday life" in a more exact way than before. The argument of this study is that realist life mode theory is about two fundamental types of dominance - personal dominance and structural dominance. "Personal dominance" is used synonymously with "ownership". "Structural dominance" is dominance between non-personal, non-conscious entities. Life mode theory is a theory about ownership surrounded by structural dominances both beneath the owning person (sub-personally), and above (socially). Personal dominance - ownership - is produced via two human and societal processes - work and love. Work is defined as doing and occuring in the sphere of necessity. In work there especially are possibilities for ownership of the material surroundings. Love is defined as doing and occuring in the sphere of freedom. In love humans produce each other as self-owned persons through transaction of love power. Both work and love has great emancipatory potentials, and this theme is discussed in the present study. But, unfortunately, really existing work and love practices are to a great extent exploitative. Labour power is exploited in capitalism, and love power in patriarchy. When it comes to structural dominance, this study focuses on the following dominances: The dominance of labour receptor over labour power in men´s working life; the dominance of love power over love receptor in women´s love life. The dominance of work over love in men´s everyday life; the dominance of love over work in women´s everyday life. And on a more social level we find the following dominances: in the male life modes the work form dominates the love form. In female life modes the love form dominates the work form. And finally, in society as a whole male life modes have dominance over female life modes. When the dominance between social structures is analyzed, a distinction is made between "dominance form" and "the substance of dominance".
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| 16. |
- Bartels, Pia, et al.
(författare)
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Allochthonous Organic Matter Supports Benthic but Not Pelagic Food Webs in Shallow Coastal Ecosystems
- 2018
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Ingår i: Ecosystems (New York. Print). - : Springer. - 1432-9840 .- 1435-0629. ; 21:7, s. 1459-1470
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Tidskriftsartikel (refereegranskat)abstract
- Rivers transport large amounts of allochthonous organic matter (OM) to the ocean every year, but there are still fundamental gaps in how allochthonous OM is processed in the marine environment. Here, we estimated the relative contribution of allochthonous OM (allochthony) to the biomass of benthic and pelagic consumers in a shallow coastal ecosystem in the northern Baltic Sea. We used deuterium as a tracer of allochthony and assessed both temporal variation (monthly from May to August) and spatial variation (within and outside river plume). We found variability in allochthony in space and time and across species, with overall higher values for zoobenthos (26.2 +/- 20.9%) than for zooplankton (0.8 +/- 0.3%). Zooplankton allochthony was highest in May and very low during the other months, likely as a result of high inputs of allochthonous OM during the spring flood that fueled the pelagic food chain for a short period. In contrast, zoobenthos allochthony was only lower in June and remained high during the other months. Allochthony of zoobenthos was generally higher close to the river mouth than outside of the river plume, whereas it did not vary spatially for zooplankton. Last, zoobenthos allochthony was higher in deeper than in shallower areas, indicating that allochthonous OM might be more important when autochthonous resources are limited. Our results suggest that climate change predictions of increasing inputs of allochthonous OM to coastal ecosystems may affect basal energy sources supporting coastal food webs.
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| 17. |
- Berggren, Martin, et al.
(författare)
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Nutrient limitation masks the dissolved organic matter composition effects on bacterial metabolism in unproductive freshwaters
- 2023
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Ingår i: Limnology and Oceanography. - : John Wiley & Sons. - 0024-3590 .- 1939-5590. ; 68:9, s. 2059-2069
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Tidskriftsartikel (refereegranskat)abstract
- Aquatic microbial responses to changes in the amount and composition of dissolved organic carbon (DOC) are of fundamental ecological and biogeochemical importance. Parallel factor (PARAFAC) analysis of excitation–emission fluorescence spectra is a common tool to characterize DOC, yet its ability to predict bacterial production (BP), bacterial respiration (BR), and bacterial growth efficiency (BGE) vary widely, potentially because inorganic nutrient limitation decouples microbial processes from their dependence on DOC composition. We used 28-d bioassays with water from 19 lakes, streams, and rivers in northern Sweden to test how much the links between bacterial metabolism and fluorescence PARAFAC components depend on experimental additions of inorganic nutrients. We found a significant interaction effect between nutrient addition and fluorescence on carbon-specific BP, and weak evidence for influence on BGE by the same interaction (p = 0.1), but no corresponding interaction effect on BR. A practical implication of this interaction was that fluorescence components could explain more than twice as much of the variability in carbon-specific BP (R2 = 0.90) and BGE (R2 = 0.70) after nitrogen and phosphorus addition, compared with control incubations. Our results suggest that an increased supply of labile DOC relative to ambient phosphorus and nitrogen induces gradually larger degrees of nutrient limitation of BP, which in turn decouple BP and BGE from fluorescence signals. Thus, while fluorescence does contain precise information about the degree to which DOC can support microbial processes, this information may be hidden in field studies due to nutrient limitation of bacterial metabolism.
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| 18. |
- Berggren, Martin, et al.
(författare)
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Systematic microbial production of optically active dissolved organic matter in subarctic lake water
- 2020
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Ingår i: Limnology and Oceanography. - : Association for the Sciences of Limnology and Oceanography (ASLO). - 0024-3590 .- 1939-5590. ; 65:5
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Tidskriftsartikel (refereegranskat)abstract
- The ecology and biogeochemistry of lakes in the subarctic region are particularly sensitive to changes in the abundance and optical properties of dissolved organic matter (DOM). External input of colored DOM to these lakes is an extensively researched topic, but little is known about potential reciprocal feedbacks between the optical properties of DOM and internal microbial processes in the water. We performed 28-day dark laboratory incubation trials on water from 101 subarctic tundra lakes in northern Sweden, measuring the microbial decay of DOM and the resulting dynamics in colored (CDOM) and fluorescent (FDOM) DOM components. While losses in dissolved oxygen during the incubations corresponded to a 20% decrease in mean DOM, conversely the mean CDOM and total FDOM increased by 22% and 30%, respectively. However, the patterns in microbial transformation of the DOM were not the same in all lakes. Notably, along the gradient of increasing ambient CDOM (water brownness), the lakes showed decreased microbial production of protein-like fluorescence, lowered DOM turnover rates and decreasing bacterial growth per unit of DOM. These trends indicate that browning of subarctic lakes systematically change the way that bacteria interact with the ambient DOM pool. Our study underscores that there is no unidirectional causal link between microbial processes and DOM optical properties, but rather reciprocal dependence between the two.
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| 19. |
- Berggren, M., et al.
(författare)
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Terrestrial support of zooplankton biomass in northern rivers
- 2018
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Ingår i: Limnology and Oceanography. - : John Wiley & Sons. - 0024-3590 .- 1939-5590. ; 63:6, s. 2479-2492
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Tidskriftsartikel (refereegranskat)abstract
- The contribution of terrestrially derived carbon to micro-crustacean zooplankton biomass (i.e., allochthony) has been previously studied in lakes, reservoirs, and estuaries, but little is known about zooplankton allochthony in rivers. In lacustrine environments, allochthony is regulated by distinct selective feeding behavior of different taxa. However, we hypothesized that restricted possibility for selective grazing in turbulent environments such as rivers would decouple zooplankton from specific microbial and algal food resources, such that their allochthony would mirror the terrestrial contribution to the surrounding bulk particle pool. We tested this idea by analyzing allochthony in 13 widely distributed Swedish rivers, using a dual-isotope mixing model. Zooplankton biomasses were generally low, and allochthony in different micro-crustacean groups (Cladocera, Cyclopoida, Calanoida) varied from 2% to 77%. As predicted, there were no correlations between allochthony and variables indicating the supply of algal and microbial food resources, such as chlorophyll a and bacterial production. Instead, the allochthony was generally similar to the share allochthonous contribution in bulk particulate organic matter, with relationships close to the 1 : 1 line. The zooplankton community allochthony was strongly regulated by the ecosystem metabolic balance between production and respiration, which in turn was dependent upon the ratio between total autochthonous organic carbon concentrations and water color. Our study for the first time shows that micro-crustacean allochthony is regulated differently in rivers compared to in lacustrine systems, and points to inefficient support of zooplankton biomass by algal resources in turbulent waters.
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| 20. |
- Bergman, Annika, et al.
(författare)
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The western Swedish BRCA1 founder mutation 3171ins5; a 3.7 cM conserved haplotype of today is a reminiscence of a 1500-year-old mutation
- 2001
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Ingår i: European Journal of Human Genetics. - : Nature Publishing Group. - 1018-4813 .- 1476-5438. ; 9:10, s. 787-793
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Tidskriftsartikel (refereegranskat)abstract
- The most recurrent BRCA1/BRCA2 mutation in Sweden is the BRCA1 mutation 3171ins5. In the western part of Sweden this mutation accounts for as much as 77% of identified mutations in these two genes. Our aim was to analyse in detail the haplotype and founder effects of the 3171ins5 and furthermore attempt to estimate the time of origin of the mutation. In the study we included eighteen apparently unrelated families with hereditary breast and/or ovarian cancer. At least one individual in each family had previously tested positive for the 3171ins5 mutation. Polymorphic microsatellite markers were used for the haplotype analyses. The markers were located within or flanking the BRCA1 gene spanning a region of 17.3 cΜ. We found several different haplotypes both for disease alleles and for the normal alleles. However, a conserved haplotype of 3.7 cΜ was observed in the 3171ins5 carriers spanning over four markers located within or very close to the BRCA1 gene. As this haplotype was not present in any of the normal controls it is highly likely that this is a mutation identical by descent, i.e. a true founder. The results from the haplotype analyses were used to estimate the age of the mutation. Estimations based on the Pexcess and linkage disequilibrium gives a first appearance of the mutation sometime around the 6th century, approximately 50 generations ago.
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| 21. |
- Bergström, Ann-Kristin, 1968-, et al.
(författare)
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Effects of nitrogen enrichment on zooplankton biomass and N:P recycling ratios across a DOC gradient in northern-latitude lakes
- 2021
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Ingår i: Hydrobiologia. - : Springer. - 0018-8158 .- 1573-5117. ; 848:21, s. 4991-5010
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Tidskriftsartikel (refereegranskat)abstract
- We used data from whole-lake studies to assess how changes in food quantity (phytoplankton biomass) and quality (phytoplankton community composition, seston C:P and N:P) with N fertilization affect zooplankton biomass, community composition and C:N:P stoichiometry, and their N:P recycling ratio along a gradient in lake DOC concentrations. We found that despite major differences in phytoplankton biomass with DOC (unimodal distributions, especially with N fertilization), no major differences in zooplankton biomass were detectable. Instead, phytoplankton to zooplankton biomass ratios were high, especially at intermediate DOC and after N fertilization, implying low trophic transfer efficiencies. An explanation for the observed low phytoplankton resource use, and biomass responses in zooplankton, was dominance of colony forming chlorophytes of reduced edibility at intermediate lake DOC, combined with reduced phytoplankton mineral quality (enhanced seston N:P) with N fertilization. N fertilization, however, increased zooplankton N:P recycling ratios, with largest impact at low DOC where phytoplankton benefitted from light sufficiently to cause enhanced seston N:P. Our results suggest that although N enrichment and increased phytoplankton biomass do not necessarily increase zooplankton biomass, bottom-up effects may still impact zooplankton and their N:P recycling ratio through promotion of phytoplankton species of low edibility and altered mineral quality.
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| 22. |
- Bergström, Ann-Kristin, 1968-, et al.
(författare)
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Light and nutrient control phytoplankton biomass responses to global change in northern lakes
- 2019
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Ingår i: Global Change Biology. - : John Wiley & Sons. - 1354-1013 .- 1365-2486. ; 25:6, s. 2021-2029
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Tidskriftsartikel (refereegranskat)abstract
- Global change affects terrestrial loadings of colored dissolved organic carbon (DOC) and nutrients to northern lakes. Still, little is known about how phytoplankton respond to changes in light and nutrient availability across gradients in lake DOC. In this study, we used results from whole-lake studies in northern Sweden to show that annual mean phytoplankton biomass expressed unimodal curved relationships across lake DOC gradients, peaking at threshold DOC levels of around 11 mg/L. Whole-lake single nutrient enrichment in selected lakes caused elevated biomass, with most pronounced effect at the threshold DOC level. These patterns give support to the suggested dual control by DOC on phytoplankton via nutrient (positively) and light (negatively) availability and imply that the lakes' location along the DOC axis is critical in determining to what extent phytoplankton respond to changes in DOC and/or nutrient loadings. By using data from the large Swedish Lake Monitoring Survey, we further estimated that 80% of northern Swedish lakes are below the DOC threshold, potentially experiencing increased phytoplankton biomass with browning alone, and/or combined with nutrient enrichment. The results support the previous model results on effects of browning and eutrophication on lake phytoplankton, and provide important understanding of how northern lakes may respond to future global changes.
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| 23. |
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| 24. |
- Bylesjö, Max, et al.
(författare)
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Integrated analysis of transcript, protein and metabolite data to study lignin biosynthesis in hybrid aspen
- 2009
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Ingår i: Journal of Proteome Research. - : American Chemical Society (ACS). - 1535-3893 .- 1535-3907. ; 8:1, s. 199-210
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Tidskriftsartikel (refereegranskat)abstract
- Tree biotechnology will soon reach a mature state where it will influence the overall supply of fiber, energy and wood products. We are now ready to make the transition from identifying candidate genes, controlling important biological processes, to discovering the detailed molecular function of these genes on a broader, more holistic, systems biology level. In this paper, a strategy is outlined for informative data generation and integrated modeling of systematic changes in transcript, protein and metabolite profiles measured from hybrid aspen samples. The aim is to study characteristics of common changes in relation to genotype-specific perturbations affecting the lignin biosynthesis and growth. We show that a considerable part of the systematic effects in the system can be tracked across all platforms and that the approach has a high potential value in functional characterization of candidate genes.
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| 25. |
- Capo, Eric, et al.
(författare)
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Droplet digital PCR applied to environmental DNA, a promising method to estimate fish population abundance from humic-rich aquatic ecosystems
- 2021
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Ingår i: Environmental DNA. - : John Wiley & Sons. - 2637-4943. ; 3:2, s. 343-352
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Tidskriftsartikel (refereegranskat)abstract
- Measures of environmental DNA (eDNA) concentrations in water samples have the potential to be both a cost-efficient and a nondestructive method to estimate fish population abundance. However, the inherent temporal and spatial variability in abiotic and biotic conditions in aquatic systems have been suggested to be a major obstacle to determine relationships between fish eDNA concentrations and fish population abundance. Moreover, once water samples are collected, methodological biases are common, which introduces additional sources of variation to potential relationships between eDNA concentrations and fish population abundance. Here, we evaluate the performance of applying the droplet digital PCR (ddPCR) method to estimate fish population abundance in experimental enclosures. Using large-scale enclosure ecosystems that contain populations of nine-spined stickleback (Pungitius pungitius), we compared the concentrations of fish eDNA (COI mitochondrial region, 134 bp) obtained with the ddPCR method with high precision estimates of fish population abundance (i.e., number of individuals) and biomass. To evaluate the effects of contrasted concentrations of humic substances (potential PCR inhibitors) on the performance of ddPCR assays, we manipulated natural dissolved organic carbon (DOC) concentrations (range 4–11 mg/L) in the enclosures. Additionally, water temperature (+2°C) was manipulated in half of the enclosures. Results showed positive relationships between eDNA concentration and fish abundance and biomass estimates although unexplained variation remained. Still and importantly, fish eDNA estimates from high DOC enclosures were not lowered by potential inhibitory effects with our procedure. Finally, water temperature (although only 2°C difference) was neither detected as a significant factor influencing fish eDNA estimates. Altogether, our work highlights that ddPCR-based eDNA is a promising method for future quantification of fish population abundance in natural systems.
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