| 1. |
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| 2. |
- Godhe, Anna, 1967, et al.
(författare)
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Comparison of three common molecular tools for distinguishing among geographically separated clones of the diatom Skeletonema marinoi Sarno et Zingone (bacillariophyceae)
- 2006
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Ingår i: Journal of Phycology. - : Wiley. - 0022-3646 .- 1529-8817. ; 42:2, s. 280-291
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Tidskriftsartikel (refereegranskat)abstract
- Skeletonema marinoi Sarno et Zingone is a planktonic marine diatom with a widespread geographic distribution. Different populations of this species may show distinct genetic signatures. We have evaluated the utility of three common molecular methods for distinguishing clones of S. marinoi from different geographic regions. Clonal cultures were isolated from the Canadian west coast, south west Portugal, and the east and west coasts of Sweden. All strains originated from resting stages in sediment. More than 90% of the individually isolated chains grew to densities suitable for DNA extraction. Genetic signatures of clones from each sample location were assessed by sequencing variable domains (D1-D3) of the nuclear large subunit (LSU) rRNA gene and internal transcriber spacer (ITS) (ITS-1, 5.8S and ITS-2) regions, and also by analysis of randomly amplified polymorphic DNA patterns. Analysis of molecular variance showed that strains from the four geographic areas were significantly separated by all three methods but that differences among European samples were best resolved by ITS 2 sequences.
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| 3. |
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| 4. |
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| 5. |
- Härnström, Karolina, 1980, et al.
(författare)
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Tropical phytoplankton community development in mesocosms inoculated with different life stages
- 2007
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Ingår i: Marine Ecology-Progress Series. - : Inter-Research Science Center. - 0171-8630 .- 1616-1599. ; 346, s. 75-88
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Tidskriftsartikel (refereegranskat)abstract
- Many diatom species have the ability to form benthic resting stages, but the importance of these stages as a supply for planktonic blooms is uncertain. A mesocosm study was carried out in December 2005 to January 2006 in Mangalore, India. Mesocosms were inoculated with various combinations of benthic and/or planktonic cells, sampled from the coastal SE Arabian Sea, and the development of the planktonic community was followed. Diatoms dominated the phytoplankton community in all mesocosms, irrespective of inoculum. The most significant differences among inoculum types were altered species composition, and the timings of the maximum cell abundances, which lagged behind in the sediment mesocosms. Populations of Thalassiosira were initiated by both plankton and benthic propagules. Taxa known from temperate coastal areas to seed bloom by benthic propagules, such as Chaetoceros and Skeletonema, were predominantly seeded by planktonic cells in this experiment; this implies differential seeding strategy within the same species at different latitudes. The species assemblage encountered in the plankton and sediment was similar, which indicates that the benthic resting stages seed an autochthonous phytoplankton flora in the area. High species diversity in all inoculated mesocosms was maintained throughout the experimental period, although the actual number of species was fewer at the end. The hydrographic conditions and timing of formation, survival, and germination of diatom resting stages in SE Arabian Sea are discussed.
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| 6. |
- Kaur-Kahlon, G., et al.
(författare)
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Response of a coastal tropical pelagic microbial community to changed salinity and temperature
- 2016
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Ingår i: Aquatic Microbial Ecology. - 0948-3055 .- 1616-1564. ; 77:1, s. 37-50
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Tidskriftsartikel (refereegranskat)abstract
- Studies on the responses of tropical microbial communities to changing hydrographic conditions are presently poorly represented. We present here the results from a mesocosm experiment conducted in southwest (SW) coastal India to investigate how changes in temperature and salinity may affect a coastal tropic microbial community. The onset of algal and bacterial blooms, the maximum production and biomass, and the interrelation between phytoplankton and bacteria were studied in replicated mesocosms. The treatments were set up featuring ambient conditions (28 °C, 35 PSU), hyposalinity (31 PSU), warming (31 °C) and a double manipulated treatment with warming and hyposalinity (31 °C, 31 PSU). The hyposaline treatment had the most considerable influence manifested as significantly lower primary production, and the most dissimilar microphytoplankton species community. The increased temperature acted as a catalyst in the double manipulated treatment and higher primary production was maintained. We investigated the dynamics of the microbial community with a structural equation model approach, and found a significant interrelation between phytoplankton biomass and bacterial abundance. Using this methodology, it became evident that temperature and salinity changes, individually and together, mediate direct and indirect effects that influence different compartments of the microbial loop. In the face of climate change, we suggest that in relatively nutrient replete tropical coastal zones, salinity and temperature changes will affect nutrient assimilation with subsequent significant effects on the quantity of microbial biomass and production.
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| 7. |
- Rehnstam-Holm, Ann-Sofi, 1959, et al.
(författare)
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Association between Phytoplankton and Vibrio spp along the southwest coast of India- a mesocosm experiment.
- 2010
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Ingår i: Aquatic Microbial Ecology. - : Inter-Research. - 0948-3055 .- 1616-1564. ; 58, s. 127-139
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Tidskriftsartikel (refereegranskat)abstract
- We report the results from a mesocosm study investigating the interrelationship between microalgae and vibrios. The mesocosms were inoculated with plankton, plankton + sediment, or sediment. We followed the diatom bloom and increases in the abundance of Vibrio spp. and V parahaemolyticus in conjunction with several environmental variables in all mesocosms and at a reference site. The dominating diatom genera were also identified. Temperature, salinity, and pH were nearly invariant in the mesocosms and did not contribute to the results. The principal environmental variables that correlated to vibrio abundance were total bacterial plate counts, phosphorus and ammonia (positive relationship), and oxygen and silica (negative). Nitrate, total bacterial counts and chlorophyll a (chl a) did not correlate with vibrio growth. The highest diatom abundances were followed by increases in vibrios in all mesocosms. This was also observed in field sampling. Together, these results suggest that diatom blooms could support Vibrio spp. growth. V parahaemolyticus was initially favoured by sediment. The contribution of V parahaemolyticus to the total bacterial population was low, on average 0.5 %, but constituted a rather high proportion of the vibrio population in the mesocosm systems, i.e. on average 18 %. Some of the identified diatom genera, e.g. Chaetoceros and Skeletonema, were negatively correlated to vibrios, while Coscinodiscus was positively correlated. The results indicate that phytoplankton blooms, when recorded as high levels of chl a, should be used with caution as predictors for future vibrio epidemics, since the origin of the chl a might have a significant effect on vibrio abundance.
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| 8. |
- Asplund, Maria E., et al.
(författare)
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Water column dynamics of Vibrio in relation to phytoplankton community composition and environmental conditions in a tropical coastal area
- 2011
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Ingår i: Environmental Microbiology. - 1462-2912 .- 1462-2920. ; 13:10, s. 2738-2751
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Tidskriftsartikel (refereegranskat)abstract
- Vibrio abundance generally displays seasonal patterns. In temperate coastal areas, temperature and salinity influence Vibrio growth, whereas in tropical areas this pattern is not obvious. The present study assessed the dynamics of Vibrio in the Arabian Sea, 1-2 km off Mangalore on the south-west coast of India, during temporally separated periods. The two sampling periods were signified by oligotrophic conditions, and stable temperatures and salinity. Vibrio abundance was estimated by culture-independent techniques in relation to phytoplankton community composition and environmental variables. The results showed that the Vibrio density during December 2007 was 10- to 100-fold higher compared with the February-March 2008 period. High Vibrio abundance in December coincided with a diatom-dominated phytoplankton assemblage. A partial least squares (PLS) regression model indicated that diatom biomass was the primary predictor variable. Low nutrient levels suggested high water column turnover rate, which bacteria compensated for by using organic molecules leaking from phytoplankton. The abundance of potential Vibrio predators was low during both sampling periods; therefore it is suggested that resource supply from primary producers is more important than top-down control by predators.
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| 9. |
- Apine, E., et al.
(författare)
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Comparative analysis of the intestinal bacterial communities in mud crab Scylla serrata in South India
- 2021
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Ingår i: Microbiologyopen. - : Wiley. - 2045-8827. ; 10:2
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Tidskriftsartikel (refereegranskat)abstract
- Little is known about the functions of the crustacean gut microbiome, but environmental parameters and habitat are known to affect the composition of the intestinal microbiome, which may in turn affect the physiological status of the host. The mud crab Scylla serrata is an economically important species, and is wild-caught, and farmed across the Indo-Pacific region. In this study, we compared the composition of the gut microbiome (in terms of gut microbial species richness and abundance) of S. serrata collected from wild sites, and farms, from the east and west coast of India, and also tested the effects of the environment on the composition. The water temperature had a statistically significant effect on gut microbiome composition, with microbial biodiversity decreasing with increasing water temperature. This could have negative effects on both wild and farmed mud crabs under future climate change conditions, although further research into the effects of temperature on gut microbiomes is required. By comparison, salinity, crab mass and carapace width, geographical location as well as whether they were farmed or wild-caught crabs did not have a significant impact on gut microbiome composition. The results indicate that farming does not significantly alter the composition of the gut microbiome when compared to wild-caught crabs.
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| 10. |
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| 11. |
- Godhe, Anna, 1967, et al.
(författare)
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Quantification of Diatom and Dinoflagellate Biomasses in Coastal Marine Seawater Samples by Real-Time PCR
- 2008
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Ingår i: Applied and Environmental Microbiology. - 0099-2240. ; 74:23, s. 7174-7182
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Tidskriftsartikel (refereegranskat)abstract
- Two real-time PCR assays targeting the small-subunit (SSU) ribosomal DNA (rDNA) were designed to assess the proportional biomass of diatoms and dinoflagellates in marine coastal water. The reverse primer for the diatom assay was designed to be class specific, and the dinoflagellate-specific reverse primer was obtained from the literature. For both targets, we used universal eukaryotic SSU rDNA forward primers. Specificity was confirmed by using a BLAST search and by amplification of cultures of various phytoplankton taxa. Reaction conditions were optimized for each primer set with linearized plasmids from cloned SSU rDNA fragments. The number of SSU rDNA copies per cell was estimated for six species of diatoms and nine species of dinoflagellates; these were significantly correlated to the biovolumes of the cells. Nineteen field samples were collected along the Swedish west coast and subjected to the two real-time PCR assays. The linear regression of the proportion of SSU rDNA copies of dinoflagellate and diatom origin versus the proportion of dinoflagellate and diatom biovolumes or biomass per liter was significant. For diatoms, linear regression of the number of SSU rDNA copies versus biovolumes or biomass per liter was significant, but no such significant correlation was detected in the field samples for dinoflagellates. The method described will be useful for estimating the proportion of dinoflagellate versus diatom biovolume or biomass and the absolute diatom biovolume or biomass in various aquatic disciplines.
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| 12. |
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| 13. |
- Kaur-Kahlon, Gurpreet, et al.
(författare)
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Quorum Sensing Regulation of Virulence Gene Expression in Vibrio harveyi during its Interaction with Marine Diatom Skeletonema marinoi
- 2021
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Ingår i: Journal of Pure and Applied Microbiology. - : Journal of Pure and Applied Microbiology. - 0973-7510 .- 2581-690X. ; 15:4, s. 2507-2519
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Tidskriftsartikel (refereegranskat)abstract
- Communication between species from different kingdoms may be as important as intra-kingdom communication. It has recently been confirmed that co-existing bacteria and phytoplankton in aquatic ecosystems do cross-talk. This study examined the signs of possible cross signalling between V. harveyi, one of the predominant bacterial species of the marine ecosystem and a dominant diatom species, S.marinoi, to understand communication over species borders. It is known that V.harveyi employ quorum sensing for cell-to-cell communication, bioluminescence (luxR), and the regulation of the virulence gene (vhp, chiA). Former studies have also shown, this kind of interactions being disrupted by compounds secreted by a few algal species existing in the aquatic ecosystem. We investigated the QS communication by quantifying the expression levels of virulence regulator luxR and virulence factors metalloprotease (vhp) and chitinase (chiA) in four different V. harveyi strains grown in the presence of S. marinoi strain. Results obtained in this study indicate that quorum sensing was activated in strains of V. harveyi analysed but did not regulate the expressions of vhp and chiA virulence factors. This observation suggests that the existence of S. marinoi did not interfere with the QS behavior of V. harveyi and its interaction with marine diatom; it may be due to the commensalism relationship.
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| 14. |
- Kaur-Kahlon, Gurpreet, et al.
(författare)
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Response of a coastal tropical pelagic microbial community to changed salinity and temperature
- 2016
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Ingår i: Aquatic Microbial Ecology. - : Inter-Research Science Center. - 0948-3055 .- 1616-1564. ; 77:1, s. 37-50
-
Tidskriftsartikel (refereegranskat)abstract
- Studies on the responses of tropical microbial communities to changing hydrographic conditions are poorly represented. We present here the results from a mesocosm experiment conducted in coastal southwestern India to investigate how changes in temperature and salinity may affect a coastal tropical microbial community. The onset of algal and bacterial blooms, maximum production and biomass, and the interrelationship between phytoplankton and bacteria were studied in replicated mesocosms. The treatments were set up to feature ambient conditions (28°C, 35 PSU), hyposalinity (31 PSU), warming (31°C), and a double manipulation treatment with warming and hyposalinity (31°C, 31 PSU). The hyposaline treatment had the most considerable influence, manifested as significantly lower primary production, and the most dissimilar microphytoplankton species community. The increased temperature acted as a catalyst in the double manipulation treatment, and higher primary production was maintained. We investigated the dynamics of the microbial community with a structural equation model and found a significant interrelationship between phytoplankton biomass and bacterial abundance. Using this methodology, it became evident that temperature and salinity changes, individually and together, mediate direct and indirect effects that influence different compartments of the microbial loop. In the face of climate change, we suggest that in relatively nutrient-replete tropical coastal zones, salinity and temperature changes will affect nutrient assimilation, with subsequent significant effects on the quantity of microbial biomass and production.
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| 15. |
- Kumar, S., et al.
(författare)
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Nitrogen uptake potential under different temperature-salinity conditions: Implications for nitrogen cycling under climate change scenarios
- 2018
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Ingår i: Marine Environmental Research. - : Elsevier BV. - 0141-1136 .- 1879-0291. ; 141:October, s. 196-204
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Tidskriftsartikel (refereegranskat)abstract
- As projected by climate change models, increase in sea surface temperature and precipitation in the future may alter nutrient cycling in the coastal regions due to potential changes in phytoplankton community structure and their ability to assimilate nitrogen (N) and carbon (C). An experiment simulating different temperature and salinity conditions (28 degrees C-35 ambient conditions, 28 degrees C-31, 31 degrees C-35 and 31 degrees C-31) in mesocosms containing 1000 L of coastal water from the Arabian Sea was performed and N uptake rates were measured using N-15 tracer technique on 2nd, 5th, 7th and 10th day of the experiment. The results show that, under all conditions, the total N (NO3- + NH4+) uptake rates were lower in the beginning and on the final day of the tracer experiment, while it peaked during middle, consistent with chlorophyll a concentrations. Total N uptake rate was significantly lower (p = 0.003) under ambient temperature -lower salinity condition (28 degrees C-31) than the others. This indicates that lowering of salinity in coastal regions due to excessive rainfall in the future may affect the N uptake potential of the phytoplankton, which may change the regional C and N budget.
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| 16. |
- Turner, Lucy M., et al.
(författare)
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Toxic Algae Silence Physiological Responses to Multiple Climate Drivers in a Tropical Marine Food Chain
- 2019
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Ingår i: Frontiers in Physiology. - : Frontiers Media SA. - 1664-042X. ; 10
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Tidskriftsartikel (refereegranskat)abstract
- Research on the effects of climate change in the marine environment continues to accelerate, yet we know little about the effects of multiple climate drivers in more complex, ecologically relevant settings - especially in sub-tropical and tropical systems. In marine ecosystems, climate change (warming and freshening from land run-oft) will increase water column stratification which is favorable for toxin producing dinoflagellates. This can increase the prevalence of toxic microalgal species, leading to bioaccumulation of toxins by filter feeders, such as bivalves, with resultant negative impacts on physiological performance. In this study we manipulated multiple climate drivers (warming, freshening, and acidification), and the availability of toxic microalgae, to determine their impact on the physiological health, and toxin load of the tropical filter-feeding clam, Meretrix meretrix. Using a structural equation modeling (SEM) approach, we found that exposure to projected marine climates resulted in direct negative effects on metabolic and immunological function and, that these effects were often more pronounced in clams exposed to multiple, rather than single climate drivers. Furthermore, our study showed that these physiological responses were modified by indirect effects mediated through the food chain. Specifically, we found that when bivalves were fed with a toxin-producing dinoflagellate (Alexandrium minutum) the physiological responses, and toxin load changed differently and in a non-predictable way compared to clams exposed to projected marine climates only. Specifically, oxygen consumption data revealed that these clams did not respond physiologically to climate warming or the combined effects of warming, freshening and acidification. Our results highlight the importance of quantifying both direct and, indirect food chain effects of climate drivers on a key tropical food species, and have important implications for shellfish production and food safety in tropical regions.
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