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| 2. |
- Hagag, Naglaa M., et al.
(författare)
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Molecular Epidemiology and Evolutionary Analysis of Avian Influenza A(H5) Viruses Circulating in Egypt, 2019-2021
- 2022
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Ingår i: Viruses. - : MDPI AG. - 1999-4915. ; 14:8
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Tidskriftsartikel (refereegranskat)abstract
- The highly pathogenic avian influenza (HPAI) H5N8 virus was first detected in Egypt in late 2016. Since then, the virus has spread rapidly among different poultry sectors, becoming the dominant HPAI H5 subtype reported in Egypt. Different genotypes of the HPAI H5N8 virus were reported in Egypt; however, the geographic patterns and molecular evolution of the Egyptian HPAI H5N8 viruses are still unclear. Here, extensive epidemiological surveillance was conducted, including more than half a million samples collected from different poultry sectors (farms/backyards/live bird markets) from all governorates in Egypt during 2019-2021. In addition, genetic characterization and evolutionary analyses were performed using 47 selected positive H5N8 isolates obtained during the same period. The result of the conducted surveillance showed that HPAI H5N8 viruses of clade 2.3.4.4b continue to circulate in different locations in Egypt, with an obvious seasonal pattern, and no further detection of the HPAI H5N1 virus of clade 2.2.1.2 was observed in the poultry population during 2019-2021. In addition, phylogenetic and Bayesian analyses revealed that two major genotypes (G5 and G6) of HPAI H5N8 viruses were continually expanding among the poultry sectors in Egypt. Notably, molecular dating analysis suggested that the Egyptian HPAI H5N8 virus is the potential ancestral viruses of the European H5N8 viruses of 2020-2021. In summary, the data of this study highlight the current epidemiology, diversity, and evolution of HPAI H5N8 viruses in Egypt and call for continuous monitoring of the genetic features of the avian influenza viruses in Egypt.
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| 4. |
- Zahra, Maram Hussein, et al.
(författare)
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Alpinia zerumbet (Pers.) : Food and Medicinal Plant with Potential In Vitro and In Vivo Anti-Cancer Activities
- 2019
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Ingår i: Molecules. - : MDPI AG. - 1431-5157 .- 1420-3049. ; 24:13
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Tidskriftsartikel (refereegranskat)abstract
- Background/Aim: Plants play an important role in anti-cancer drug discovery, therefore, the current study aimed to evaluate the biological activity of Alpinia zerumbet (A. zerumbet) flowers. Methods: The phytochemical and biological criteria of A. zerumbet were in vitro investigated as well as in mouse xenograft model. Results: A. zerumbet extracts, specially CH2Cl2 and MeOH extracts, exhibited the highest potent anti-tumor activity against Ehrlich ascites carcinoma (EAC) cells. The most active CH2Cl2 extract was subjected to bioassay-guided fractionation leading to isolatation of the naturally occurring 5,6-dehydrokawain (DK) which was characterized by IR, MS, H-1-NMR and C-13-NMR. A. zerumbet extracts, specially MeOH and CH2Cl2 extracts, exhibited significant inhibitory activity towards tumor volume (TV). Furthermore, A. zerumbet extracts declined the high level of malonaldehyde (MDA) as well as elevated the levels of superoxide dismutase (SOD) and catalase (CAT) in liver tissue homogenate. Moreover, DK showed anti-proliferative action on different human cancer cell lines. The recorded IC50 values against breast carcinoma (MCF-7), liver carcinoma (Hep-G2) and larynx carcinoma cells (HEP-2) were 3.08, 6.8, and 8.7 mu g/mL, respectively. Conclusion: Taken together, these findings open the door for further investigations in order to explore the potential medicinal properties of A. zerumbet.
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| 5. |
- Hayes, Catherine A, et al.
(författare)
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Glycomic work-flow for analysis of mucin o-linked oligosaccharides.
- 2012
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Ingår i: Methods in molecular biology. - Totowa, NJ : Humana Press. - 1940-6029. ; 842, s. 141-63
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Tidskriftsartikel (refereegranskat)abstract
- The high-throughput analysis of the glycosylation of high molecular weight proteins, such as mucins, has been the aim of glycomics initiatives for the last decade. Here, we present a work-flow for the efficient and reproducible analysis of reduced oligosaccharides from a typical mucin sample. This work-flow can be applied to any similar samples of oligosaccharides. We include recently developed bioinformatic procedures for the statistical analysis of sample sets. These procedures can be applied in any laboratory environment, using free programs that are platform independent. The scripts are explained and can be adjusted to suit the individual experiment. Finally, a number of example results are given to highlight the use of the statistical analysis in a biological context.
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| 6. |
- Issa, Samah, et al.
(författare)
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Higher Energy Collisional Dissociation Mass Spectrometry of Sulfated O-Linked Oligosaccharides
- 2018
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Ingår i: Journal of Proteome Research. - : American Chemical Society (ACS). - 1535-3893 .- 1535-3907. ; 17:9, s. 3259-3267
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Tidskriftsartikel (refereegranskat)abstract
- Sulfation is the final decoration of mucin-type O-linked oligosaccharides before mucins are released into the lumen of the gastrointestinal, respiratory, and genital tracts. Because only a fraction of oligosaccharides undergo this type of modifications in the Golgi apparatus, sometimes also only by dedicated cells, the glycobiology of these low abundant sulfated oligosaccharides is often overlooked. At the same time, the technology to consistently identify and characterize them has been lagging. We adopted higher energy collisional dissociation to characterize sulfated oligosaccharides from porcine gastric and human salivary MUC5B mucins. With this approach we could generate conclusive spectra up to nonasaccharides. Both singly and doubly sulfated oligosaccharides were characterized. By comparing the fragmentation of low-mass fragments of m/z 100-320 with standards for six-linked and three linked sulfate, it could be shown that characteristic fragmentation exists, verifying that porcine gastric mucin contains mostly six linked sulfate to GlcNAc, whereas human MUC5B contains mostly three-linked Gal. When performing ion-trap MS2 fragmentation, these low-molecular-mass fragments are usually not detected. Hence it can be concluded that to be able to address biological questions of sulfation low-mass fragments are important for the assignment of sulfate position.
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| 7. |
- Mosaad, Zienab, et al.
(författare)
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Emergence of Highly Pathogenic Avian Influenza A Virus (H5N1) of Clade 2.3.4.4b in Egypt, 2021-2022
- 2023
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Ingår i: Pathogens. - : MDPI. - 2076-0817. ; 12:1
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Tidskriftsartikel (refereegranskat)abstract
- Wild migratory birds have the capability to spread avian influenza virus (AIV) over long distances as well as transmit the virus to domestic birds. In this study, swab and tissue samples were obtained from 190 migratory birds during close surveillance in Egypt in response to the recent outbreaks of the highly pathogenic avian influenza (HPAI) H5N1 virus. The collected samples were tested for a variety of AIV subtypes (H5N1, H9N2, H5N8, and H6N2) as well as other pathogens such as NDV, IBV, ILT, IBDV, and WNV. Among all of the tested samples, the HPAI H5N1 virus was found in six samples; the other samples were found to be negative for all of the tested pathogens. The Egyptian HPAI H5N1 strains shared genetic traits with the HPAI H5N1 strains that are currently being reported in Europe, North America, Asia, and Africa in 2021-2022. Whole genome sequencing revealed markers associated with mammalian adaption and virulence traits among different gene segments, similar to those found in HPAI H5N1 strains detected in Europe and Africa. The detection of the HPAI H5N1 strain of clade 2.3.4.4b in wild birds in Egypt underlines the risk of the introduction of this strain into the local poultry population. Hence, there is reason to be vigilant and continue epidemiological and molecular monitoring of the AIV in close proximity to the domestic-wild bird interface.
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| 8. |
- Selim, Tarek, et al.
(författare)
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Can Potato Crop on Sandy Soil Be Safely Irrigated with Heavy Metal Polluted Water?
- 2022
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Ingår i: Water (Switzerland). - : MDPI AG. - 2073-4441. ; 14:8
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Tidskriftsartikel (refereegranskat)abstract
- Heavy metal (HM) accumulation in soil and plants can occur when water contaminated with HMs is used as a source of irrigation (El-Salam Canal, Egypt). In this study, the effect of watering potato crop in sandy soil from a polluted water source under flood irrigation (FI), sprinkler irrigation (SI), and surface drip irrigation (DI) on the transport of the HMs copper (Cu), manganese (Mn), lead (Pb), and zinc (Zn) in the root zone was experimentally investigated. HM concentrations in potato plant parts was also determined. The field experiments were conducted in a completely randomized block with three replicates for each irrigation method by using nine field lysimeters. Soil and plant samples were collected at the end of the growing season to determine their HM content. The results showed that regardless of irrigation method, irrigation with HM contaminated water raised HM concentrations in both soil and potato plants. DI produced the highest concentrations of most HMs (Cu, Mn, and Pb) in the upper soil layer (0–40 cm) and highest Cu, Pb, and Zn concentrations in plant tubers as well. Maximum Zn concentration in the upper soil layer and maximum Mn concentration in plant tubers occurred under SI. The maximum concentrations of Cu, Mn, Pb, and Zn in both the upper soil layer and plant tubers were 12.0, 140.0, 11.6 and 67.9 mg/kg and 6.3, 9.4, 2.3 and 23.9 mg/kg, respectively. However, FI produced the highest concentrations in the deep soil layer (40–60 cm) and the least concentration of HMs in plant tubers. These concentrations were 18.8, 203.8, 13.3 and 70 mg/kg and 4.0, 6.0, 0.6 and 17.1 mg/kg in soil and plant tubers for Cu, Mn, Pb, and Zn, respectively. The maximum concentrations of HMs in soil and potato plants were lower than the maximum permissible limits. Therefore, El-Salam Canal water appears not to be harmful in the short term. However, as shown in the results, HM accumulation depends on irrigation technique; thus, more studies are needed to determine harmful effects in the long term.
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| 9. |
- Selim, Tarek, et al.
(författare)
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Heavy Metal Transport in Different Drip-Irrigated Soil Types with Potato Crop
- 2023
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Ingår i: Sustainability (Switzerland). - 2071-1050. ; 15:13
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Tidskriftsartikel (refereegranskat)abstract
- Heavy metal (HM)-polluted soil is a serious concern, especially as brackish water is widely used for irrigation purposes in water-scarce countries. In this study, the HYDRUS-2D model was used to simulate HM (copper (Cu), lead (Pb), and zinc (Zn)) transport through agricultural land cultivated with potato crops under surface drip irrigation to explore the potential groundwater contamination risk. Three soil types, namely, silty clay loam, sandy loam, and sandy soil, and two irrigation schemes, irrigation every two days (scheme A) and irrigation every four days (scheme B), were considered during the simulations. Firstly, the ability of HYDRUS-2D to simulate water flow was validated using data obtained from a full growing season of the potato crop in a lysimeter irrigated by surface drip irrigation using El-Salam Canal water, Egypt (i.e., water contaminated by HMs). Secondly, the model was calibrated for solute transport parameters. After that, the investigated simulation scenarios were executed. The results showed that HYDRUS-2D effectively simulated water flow. Moreover, a good agreement between the simulations and experimental results of HM concentrations under the calibrated solute parameters was obtained with R2 values of 0.99, 0.91, and 0.71 for Cu, Pb, and Zn concentrations, respectively. HM distribution is considerably influenced by the HMs’ adsorption isotherm. The results of the investigated scenarios reveal that soil texture has a greater impact on HM concentrations in the simulation domain and on the contamination risk of the groundwater than the irrigation scheme. Under both irrigation schemes, lower HM concentrations were observed in sand, while higher values were observed in silty clay loam. Subsequently, the potential shallow groundwater contamination risk is greater when cultivating potatoes in sand, as higher HM concentrations were found in drainage water compared to the two other investigated soils, regardless of the irrigation scheme. The cumulative Cu, Pb, and Zn concentrations in drainage water corresponding to scheme A for silty clay loam and sandy loam were 1.65, 1.67, and 1.67 and 1.15, 1.14, and 1.15 times higher, respectively, than scheme B. To safeguard the sustainability of groundwater and agricultural lands irrigated with water contaminated by HMs, it is recommended to adopt an irrigation frequency of once every four days in soils with silty clay loam and sandy loam textures.
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