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- Kanai, M, et al.
(författare)
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- 2023
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swepub:Mat__t
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| 2. |
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| 3. |
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| 4. |
- Duran, R. E., et al.
(författare)
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Complete Genome Sequence of the Marine Hydrocarbon Degrader Alcaligenes aquatilis QD168, Isolated from Crude Oil-Polluted Sediment of Quintero Bay, Central Chile
- 2019
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Ingår i: Microbiology Resource Announcements. - : American Society for Microbiology. - 2576-098X. ; 8:5
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Tidskriftsartikel (refereegranskat)abstract
- Alcaligenes aquatilis strain QD168 (= CCUG 69566) is a marine hydrocarbon-degrading bacterium isolated from crude oil-polluted sediment from Quintero Bay, Central Chile. Here, we present the 4.32-Mb complete genome sequence of strain QD168, with 3,892 coding sequences, 58 tRNAs, and a 56.3% G+C content.
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| 5. |
- Duran, R. E., et al.
(författare)
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Genomic and Physiological Traits o the Marine Bacterium Alcaligenes aquatilis QD168 Isolated From Quintero Bay, Central Chile, Reveal a Robust Adaptive Response to Environmental Stressors
- 2019
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Ingår i: Frontiers in Microbiology. - : Frontiers Media SA. - 1664-302X. ; 10
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Tidskriftsartikel (refereegranskat)abstract
- Alcaligenes aquatilis QD168 is a marine, aromatic hydrocarbon-degrading bacterium, isolated from an oil-polluted sediment of Quintero Bay, an industrial-coastal zone that has been chronically impacted by diverse pollutants. The aims of this study were to characterize the phylogenomic positions of Alcaligenes spp. and to characterize the genetic determinants and the physiological response of A. aquatilis QD168 to model environmental stressors (benzene, oxidizing agents, and salt). Phylogenomic analyses, using 35 housekeeping genes, clustered A. aquatilis QD168 with four other strains of Alcaligenes spp. (A. aquatilis BU33N, A. faecalis JQ135, A. faecalis UBA3227, and A. faecalis UBA7629). Genomic sequence analyses of A. aquatilis QD168 with 25 Alcaligenes spp., using ANIb, indicated that A. aquatilis BU33N is the closest related strain, with 96.8% ANIb similarity. Strain QD168 harbors 95 genes encoding proteins of seven central catabolic pathways, as well as sixteen peripheral catabolic pathways/reactions for aromatic compounds. A. aquatilis QD168 was able to grow on 3-hydroxybenzoate, 4-hydroxybenzoate, benzoate, benzene, 3-hydroxycinnamate, cinnamate, anthranilate, benzamide, 4-aminobenzoate, nicotinate, toluene, biphenyl and tryptophan, as sole carbon or nitrogen source. Benzene degradation was further analyzed by growth, metabolite identification and gene expression analyses. Benzene strongly induced the expression of the genes encoding phenol hydroxylase (dmpP) and catechol 1,2-dioxygenase (catA). Additionally, 30 genes encoding transcriptional regulators, scavenging enzymes, oxidative damage repair systems and isozymes involved in oxidative stress response were identified. Oxidative stress response of strain QD168 to hydrogen peroxide and paraquat was characterized, demonstrating that A. aquatilis QD168 is notably more resistant to paraquat than to H2O2. Genetic determinants (47 genes) for osmoprotective responses were identified, correlating with observed high halotolerance by strain QD168. The physiological adaptation of A. aquatilis QD168 to environmental stressors such as pollutants, oxidative stress and salinity may be exploited for bioremediation of oil-polluted saline sites.
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| 6. |
- Sanhueza, Patricio, et al.
(författare)
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The ALMA Survey of 70 μm Dark High-mass Clumps in Early Stages (ASHES). I. Pilot Survey: Clump Fragmentation
- 2019
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Ingår i: Astrophysical Journal. - : American Astronomical Society. - 1538-4357 .- 0004-637X. ; 886:2
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Tidskriftsartikel (refereegranskat)abstract
- © 2019. The American Astronomical Society. All rights reserved. The ALMA Survey of 70 μm dark High-mass clumps in Early Stages (ASHES) is designed to systematically characterize the earliest stages and constrain theories of high-mass star formation. Twelve massive (>500 M⊙ ), cold (≤15 K), 3.6-70 μm dark prestellar clump candidates, embedded in infrared dark clouds, were carefully selected in the pilot survey to be observed with the Atacama Large Millimeter/submillimeter Array (ALMA). We have mosaicked each clump (∼1 arcmin2) in continuum and line emission with the 12 m, 7 m, and Total Power (TP) arrays at 224 GHz (1.34 mm), resulting in ∼1.″2 resolution (∼4800 au, at the average source distance). As the first paper in the series, we concentrate on the continuum emission to reveal clump fragmentation. We detect 294 cores, from which 84 (29%) are categorized as protostellar based on outflow activity or "warm core" line emission. The remaining 210 (71%) are considered prestellar core candidates. The number of detected cores is independent of the mass sensitivity range of the observations and, on average, more massive clumps tend to form more cores. We find a large population of low-mass ( 30 M⊙) prestellar cores (maximum mass 11 M⊙). From the prestellar core mass function, we derive a power-law index of 1.17 ± 0.10, which is slightly shallower than Salpeter. We used the minimum spanning tree (MST) technique to characterize the separation between cores and their spatial distribution, and to derive mass segregation ratios. While there is a range of core masses and separations detected in the sample, the mean separation and mass per clump are well explained by thermal Jeans fragmentation and are inconsistent with turbulent Jeans fragmentation. Core spatial distribution is well described by hierarchical subclustering rather than centrally peaked clustering. There is no conclusive evidence of mass segregation. We test several theoretical conditions and conclude that overall, competitive accretion and global hierarchical collapse scenarios are favored over the turbulent core accretion scenario.
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