| 1. |
- Kanai, M, et al.
(författare)
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- 2023
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swepub:Mat__t
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| 2. |
- Klionsky, Daniel J., et al.
(författare)
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Guidelines for the use and interpretation of assays for monitoring autophagy
- 2012
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Ingår i: Autophagy. - : Informa UK Limited. - 1554-8635 .- 1554-8627. ; 8:4, s. 445-544
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Forskningsöversikt (refereegranskat)abstract
- In 2008 we published the first set of guidelines for standardizing research in autophagy. Since then, research on this topic has continued to accelerate, and many new scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Accordingly, it is important to update these guidelines for monitoring autophagy in different organisms. Various reviews have described the range of assays that have been used for this purpose. Nevertheless, there continues to be confusion regarding acceptable methods to measure autophagy, especially in multicellular eukaryotes. A key point that needs to be emphasized is that there is a difference between measurements that monitor the numbers or volume of autophagic elements (e.g., autophagosomes or autolysosomes) at any stage of the autophagic process vs. those that measure flux through the autophagy pathway (i.e., the complete process); thus, a block in macroautophagy that results in autophagosome accumulation needs to be differentiated from stimuli that result in increased autophagic activity, defined as increased autophagy induction coupled with increased delivery to, and degradation within, lysosomes (in most higher eukaryotes and some protists such as Dictyostelium) or the vacuole (in plants and fungi). In other words, it is especially important that investigators new to the field understand that the appearance of more autophagosomes does not necessarily equate with more autophagy. In fact, in many cases, autophagosomes accumulate because of a block in trafficking to lysosomes without a concomitant change in autophagosome biogenesis, whereas an increase in autolysosomes may reflect a reduction in degradative activity. Here, we present a set of guidelines for the selection and interpretation of methods for use by investigators who aim to examine macroautophagy and related processes, as well as for reviewers who need to provide realistic and reasonable critiques of papers that are focused on these processes. These guidelines are not meant to be a formulaic set of rules, because the appropriate assays depend in part on the question being asked and the system being used. In addition, we emphasize that no individual assay is guaranteed to be the most appropriate one in every situation, and we strongly recommend the use of multiple assays to monitor autophagy. In these guidelines, we consider these various methods of assessing autophagy and what information can, or cannot, be obtained from them. Finally, by discussing the merits and limits of particular autophagy assays, we hope to encourage technical innovation in the field.
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| 3. |
- Peace, Alexander L., et al.
(författare)
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Evidence for Basement Reactivation during the Opening of the Labrador Sea from the Makkovik Province, Labrador, Canada : Insights from Field Data and Numerical Models
- 2018
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Ingår i: Geosciences. - : MDPI. - 2076-3263. ; 8:8
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Tidskriftsartikel (refereegranskat)abstract
- The onshore exposures adjacent to modern, offshore passive continental margins may preserve evidence of deformation from the pre-, syn-, and post-rift phases of continental breakup that allow us to investigate the processes associated with and controlling rifting and breakup. Here, we characterize onshore brittle deformation and pre-rift basement metamorphic mineral fabric from onshore Labrador in Eastern Canada in the Palaeoproterozoic Aillik Domain of the Makkovik Province. Stress inversion (1) was applied to these data and then compared to (2) numerical models of hybrid slip and dilation tendency, (3) independent calculations of the regional geopotential stress field, and (4) analyses of palaeo-stress in proximal regions from previous work. The stress inversion shows well-constrained extensional deformation perpendicular to the passive margin, likely related to pre-breakup rifting in the proto-Labrador Sea. Hybrid slip and dilatation analysis indicates that inherited basement structures were likely oriented in a favorable orientation to be reactivated during rifting. Reconstructed geopotential stresses illuminate changes of the ambient stress field over time and confirm the present paleo-stress estimates. The new results and numerical models provide a consistent picture of the late Mesozoic-Cenozoic lithospheric stress field evolution in the Labrador Sea region. The proto-Labrador Sea region was characterized by a persistent E-W (coast-perpendicular) extensional stress regime, which we interpret as the pre-breakup continental rifting that finally led to continental breakup. Later, the ridge push of the Labrador Sea spreading ridge maintained this general direction of extension. We see indications for anti-clockwise rotation of the direction of extension along some of the passive margins. However, extreme persistent N-S-oriented extension as indicated by studies further north in West Greenland cannot be confirmed.
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| 4. |
- Peace, Alexander L., et al.
(författare)
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A review of Pangaea dispersal and Large Igneous Provinces : In search of a causative mechanism
- 2020
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Ingår i: Earth-Science Reviews. - : Elsevier BV. - 0012-8252 .- 1872-6828. ; 206
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Forskningsöversikt (refereegranskat)abstract
- The breakup of Pangaea was accompanied by extensive, episodic, magmatic activity. Several Large Igneous Provinces (LIPs) formed, such as the Central Atlantic Magmatic Province (CAMP) and the North Atlantic Igneous Province (NAIP). Here, we review the chronology of Pangaea breakup and related large-scale magmatism. We review the Triassic formation of the Central Atlantic Ocean, the breakup between East and West Gondwana in the Middle Jurassic, the Early Cretaceous opening of the South Atlantic, the Cretaceous separation of India from Antarctica, and finally the formation of the North Atlantic in the Mesozoic-Cenozoic. We demonstrate that throughout the dispersal of Pangaea, major volcanism typically occurs distal from the locus of rift initiation and initial oceanic crust accretion. There is no location where extension propagates away from a newly formed LIP. Instead, LIPs are coincident with major lithosphere-scale shear movements, aborted rifts and splinters of continental crust rifted far out into the oceanic domain. These observations suggest that a fundamental reappraisal of the causes and consequences of breakup-related LIPs is in order.
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| 5. |
- Schiffer, Christian, et al.
(författare)
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Structural inheritance in the North Atlantic
- 2020
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Ingår i: Earth-Science Reviews. - : Elsevier BV. - 0012-8252 .- 1872-6828. ; 206
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Forskningsöversikt (refereegranskat)abstract
- The North Atlantic, extending from the Charlie Gibbs Fracture Zone to the north Norway-Greenland-Svalbard margins, is regarded as both a classic case of structural inheritance and an exemplar for the Wilson-cycle concept. This paper examines different aspects of structural inheritance in the Circum-North Atlantic region: 1) as a function of rejuvenation from lithospheric to crustal scales, and 2) in terms of sequential rifting and opening of the ocean and its margins, including a series of failed rift systems. We summarise and evaluate the role of fundamental lithospheric structures such as mantle fabric and composition, lower crustal inhomogeneities, orogenic belts, and major strike-slip faults during breakup. We relate these to the development and shaping of the NE Atlantic rifted margins, localisation of magmatism, and microcontinent release. We show that, although inheritance is common on multiple scales, the Wilson Cycle is at best an imperfect model for the Circum-North Atlantic region. Observations from the NE Atlantic suggest depth dependency in inheritance (surface, crust, mantle) with selective rejuvenation depending on time-scales, stress field orientations and thermal regime. Specifically, post-Caledonian reactivation to form the North Atlantic rift systems essentially followed pre-existing orogenic crustal structures, while eventual breakup reflected a change in stress field and exploitation of a deeper-seated, lithospheric-scale shear fabrics. We infer that, although collapse of an orogenic belt and eventual transition to a new ocean does occur, it is by no means inevitable.
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