| 1. |
- Jacobsson, Jesper, 1984-, et al.
(författare)
-
An open-access database and analysis tool for perovskite solar cells based on the FAIR data principles
- 2022
-
Ingår i: Nature Energy. - : Springer Nature. - 2058-7546. ; 7:1, s. 107-115
-
Tidskriftsartikel (refereegranskat)abstract
- Large datasets are now ubiquitous as technology enables higher-throughput experiments, but rarely can a research field truly benefit from the research data generated due to inconsistent formatting, undocumented storage or improper dissemination. Here we extract all the meaningful device data from peer-reviewed papers on metal-halide perovskite solar cells published so far and make them available in a database. We collect data from over 42,400 photovoltaic devices with up to 100 parameters per device. We then develop open-source and accessible procedures to analyse the data, providing examples of insights that can be gleaned from the analysis of a large dataset. The database, graphics and analysis tools are made available to the community and will continue to evolve as an open-source initiative. This approach of extensively capturing the progress of an entire field, including sorting, interactive exploration and graphical representation of the data, will be applicable to many fields in materials science, engineering and biosciences.
|
|
| 2. |
- Zuo, H., et al.
(författare)
-
Vitamin B6 catabolism and lung cancer risk : Results from the Lung Cancer Cohort Consortium (LC3)
- 2019
-
Ingår i: Annals of Oncology. - : Elsevier BV. - 0923-7534 .- 1569-8041. ; 30:3, s. 478-485
-
Tidskriftsartikel (refereegranskat)abstract
- Background Increased vitamin B6 catabolism related to inflammation, as measured by the PAr index (the ratio of 4-pyridoxic acid over the sum of pyridoxal and pyridoxal-5'-phosphate), has been positively associated with lung cancer risk in two prospective European studies. However, the extent to which this association translates to more diverse populations is not known. Materials and methods For this study, we included 5323 incident lung cancer cases and 5323 controls individually matched by age, sex, and smoking status within each of 20 prospective cohorts from the Lung Cancer Cohort Consortium. Cohort-specific odds ratios (ORs) and 95% confidence intervals (CIs) for the association between PAr and lung cancer risk were calculated using conditional logistic regression and pooled using random-effects models. Results PAr was positively associated with lung cancer risk in a dose-response fashion. Comparing the fourth versus first quartiles of PAr resulted in an OR of 1.38 (95% CI: 1.19-1.59) for overall lung cancer risk. The association between PAr and lung cancer risk was most prominent in former smokers (OR: 1.69, 95% CI: 1.36-2.10), men (OR: 1.60, 95% CI: 1.28-2.00), and for cancers diagnosed within 3 years of blood draw (OR: 1.73, 95% CI: 1.34-2.23). Conclusion Based on pre-diagnostic data from 20 cohorts across 4 continents, this study confirms that increased vitamin B6 catabolism related to inflammation and immune activation is associated with a higher risk of developing lung cancer. Moreover, PAr may be a pre-diagnostic marker of lung cancer rather than a causal factor.
|
|
| 3. |
|
|
| 4. |
- Hlozek, R., et al.
(författare)
-
Results of the Photometric LSST Astronomical Time-series Classification Challenge (PLAsTiCC)
- 2023
-
Ingår i: Astrophysical Journal Supplement Series. - 0067-0049 .- 1538-4365. ; 267:2
-
Tidskriftsartikel (refereegranskat)abstract
- Next-generation surveys like the Legacy Survey of Space and Time (LSST) on the Vera C. Rubin Observatory (Rubin) will generate orders of magnitude more discoveries of transients and variable stars than previous surveys. To prepare for this data deluge, we developed the Photometric LSST Astronomical Time-series Classification Challenge (PLAsTiCC), a competition that aimed to catalyze the development of robust classifiers under LSST-like conditions of a nonrepresentative training set for a large photometric test set of imbalanced classes. Over 1000 teams participated in PLAsTiCC, which was hosted in the Kaggle data science competition platform between 2018 September 28 and 2018 December 17, ultimately identifying three winners in 2019 February. Participants produced classifiers employing a diverse set of machine-learning techniques including hybrid combinations and ensemble averages of a range of approaches, among them boosted decision trees, neural networks, and multilayer perceptrons. The strong performance of the top three classifiers on Type Ia supernovae and kilonovae represent a major improvement over the current state of the art within astronomy. This paper summarizes the most promising methods and evaluates their results in detail, highlighting future directions both for classifier development and simulation needs for a next-generation PLAsTiCC data set.
|
|
| 5. |
- Huang, Hongyun, et al.
(författare)
-
Clinical Cell Therapy Guidelines for Neurorestoration (IANR/CANR 2017)
- 2018
-
Ingår i: Cell Transplantation. - : SAGE Publications. - 0963-6897 .- 1555-3892. ; 27:2, s. 310-324
-
Forskningsöversikt (refereegranskat)abstract
- Cell therapy has been shown to be a key clinical therapeutic option for central nervous system diseases or damage. Standardization of clinical cell therapy procedures is an important task for professional associations devoted to cell therapy. The Chinese Branch of the International Association of Neurorestoratology (IANR) completed the first set of guidelines governing the clinical application of neurorestoration in 2011. The IANR and the Chinese Association of Neurorestoratology (CANR) collaborated to propose the current version "Clinical Cell Therapy Guidelines for Neurorestoration (IANR/CANR 2017)". The IANR council board members and CANR committee members approved this proposal on September 1, 2016, and recommend it to clinical practitioners of cellular therapy. These guidelines include items of cell type nomenclature, cell quality control, minimal suggested cell doses, patient-informed consent, indications for undergoing cell therapy, contraindications for undergoing cell therapy, documentation of procedure and therapy, safety evaluation, efficacy evaluation, policy of repeated treatments, do not charge patients for unproven therapies, basic principles of cell therapy, and publishing responsibility.
|
|
| 6. |
- Li, X. T., et al.
(författare)
-
Association of the adiponectin gene (ADIPOQ) +45 T > G polymorphism with the metabolic syndrome among Han Chinese in Sichuan province of China
- 2012
-
Ingår i: Asia Pacific Journal of Clinical Nutrition. - 0964-7058. ; 21:2, s. 296-301
-
Tidskriftsartikel (refereegranskat)abstract
- The metabolic syndrome is a cluster of abnormalities characterized by obesity, impaired glucose metabolism, hypertension or elevated blood pressure, and dyslipidemia. The aim of this study was to investigate the association of the adiponectin gene (ADIPOQ) +45 T > G polymorphism with the metabolic syndrome among Han Chinese in Sichuan province of China. A case-control design was used including 116 patients with the metabolic syndrome and 108 unrelated controls, matched on age and gender. The ADIPOQ +45G allele (TG+GG) had a significant association with risk of the metabolic syndrome (odds ratio=1.88, 95% confidence interval: 1.03-3.44, p=0.039) adjusted for education, physical activity, family history of related diseases, smoking and drinking, compared with subjects with IT genotype. The association between the ADIPOQ +45 T>G polymorphism and the metabolic syndrome was independent of multiple confounders.
|
|
| 7. |
|
|
| 8. |
- Sun, M. D., et al.
(författare)
-
New short-lived isotope 223Np and the absence of the Z = 92 subshell closure near N = 126
- 2017
-
Ingår i: Physics Letters B. - : Elsevier. - 0370-2693 .- 1873-2445. ; 771, s. 303-308
-
Tidskriftsartikel (refereegranskat)abstract
- The N=130 short-lived isotope 223Np was produced as evaporation residue (ER) in the fusion reaction 40Ar + 187Re at the gas-filled recoil separator Spectrometer for Heavy Atom and Nuclear Structure (SHANS). It was identified through temporal and spatial correlations with α decays of 215Ac and/or 211Fr, the third and fourth members of the α-decay chain starting from 223Np. The pileup signals of ER(223Np)–α(223Np)–α(219Pa) were resolved by using the digital pulse processing technique. An α decay with half-life of T1/2=2.15(52100) μs and energy of Eα=9477(44) keV was attributed to 223Np. Spin and parity of 9/2− were tentatively proposed for the ground state of 223Np by combining the reduced α-decay width and large-scale shell-model calculations. This assignment together with the proton separation energy disprove the existence of a Z=92 subshell closure.
|
|
| 9. |
- Yin, XY, et al.
(författare)
-
Genome-wide meta-analysis identifies multiple novel associations and ethnic heterogeneity of psoriasis susceptibility
- 2015
-
Ingår i: Nature communications. - : Springer Science and Business Media LLC. - 2041-1723. ; 6, s. 6916-
-
Tidskriftsartikel (refereegranskat)abstract
- Psoriasis is a common inflammatory skin disease with complex genetics and different degrees of prevalence across ethnic populations. Here we present the largest trans-ethnic genome-wide meta-analysis (GWMA) of psoriasis in 15,369 cases and 19,517 controls of Caucasian and Chinese ancestries. We identify four novel associations at LOC144817, COG6, RUNX1 and TP63, as well as three novel secondary associations within IFIH1 and IL12B. Fine-mapping analysis of MHC region demonstrates an important role for all three HLA class I genes and a complex and heterogeneous pattern of HLA associations between Caucasian and Chinese populations. Further, trans-ethnic comparison suggests population-specific effect or allelic heterogeneity for 11 loci. These population-specific effects contribute significantly to the ethnic diversity of psoriasis prevalence. This study not only provides novel biological insights into the involvement of immune and keratinocyte development mechanism, but also demonstrates a complex and heterogeneous genetic architecture of psoriasis susceptibility across ethnic populations.
|
|
| 10. |
|
|
| 11. |
- Bethlehem, RAI, et al.
(författare)
-
Brain charts for the human lifespan
- 2022
-
Ingår i: Nature. - : Springer Science and Business Media LLC. - 1476-4687 .- 0028-0836. ; 604:79057906, s. 525-
-
Tidskriftsartikel (refereegranskat)abstract
- Over the past few decades, neuroimaging has become a ubiquitous tool in basic research and clinical studies of the human brain. However, no reference standards currently exist to quantify individual differences in neuroimaging metrics over time, in contrast to growth charts for anthropometric traits such as height and weight1. Here we assemble an interactive open resource to benchmark brain morphology derived from any current or future sample of MRI data (http://www.brainchart.io/). With the goal of basing these reference charts on the largest and most inclusive dataset available, acknowledging limitations due to known biases of MRI studies relative to the diversity of the global population, we aggregated 123,984 MRI scans, across more than 100 primary studies, from 101,457 human participants between 115 days post-conception to 100 years of age. MRI metrics were quantified by centile scores, relative to non-linear trajectories2 of brain structural changes, and rates of change, over the lifespan. Brain charts identified previously unreported neurodevelopmental milestones3, showed high stability of individuals across longitudinal assessments, and demonstrated robustness to technical and methodological differences between primary studies. Centile scores showed increased heritability compared with non-centiled MRI phenotypes, and provided a standardized measure of atypical brain structure that revealed patterns of neuroanatomical variation across neurological and psychiatric disorders. In summary, brain charts are an essential step towards robust quantification of individual variation benchmarked to normative trajectories in multiple, commonly used neuroimaging phenotypes.
|
|
| 12. |
|
|
| 13. |
|
|
| 14. |
- Cai, Z. Y., et al.
(författare)
-
Interdecadal variability of the warm Arctic-cold Eurasia pattern linked to the Barents oscillation
- 2023
-
Ingår i: Atmospheric Research. - : Elsevier BV. - 0169-8095. ; 287
-
Tidskriftsartikel (refereegranskat)abstract
- Observed winter near-surface air temperature anomalies in the Northern Hemisphere have exhibited a warm Arctic-cold Eurasia (WACE) pattern with interdecadal variation in recent decades, but the exact mechanism behind WACE is still under debate. This study used reanalysis data and climate model simulations to investigate the interdecadal variability of the WACE pattern on a centennial scale, as well as the role of atmospheric circulations. It is found that the second mode of atmospheric variability over the North Atlantic-Arctic region, known as the Barents oscillation (BO), played a dominant role in regulating the interdecadal variability of WACE. The atmospheric circulation associated with the positive phase of the BO corresponds to an anomalous enhancement of the quasi-barotropic anticyclone near the southern Barents-Kara Seas (BKS) and the North Atlantic, as well as a weakening of the mid-latitude westerly jet. This atmospheric circulation anomaly favors the northward transport of atmospheric heat and moisture to the BKS from the mid-latitudes, resulting in an increased air temperature through downward longwave radiation. Concurrently cold air is transported from the polar region to Central Eurasia (CE), decreasing air temperature over CE. The amplified temperature anomaly dipole results in the decadal enhancement of the WACE pattern. The atmospheric circulation anomalies related to the negative phase of the BO are the opposite, which in turn leads to the decadal weakening of the WACE pattern. Our results further support the important role of internal atmospheric variability in the formation of WACE and emphasize that the atmospheric circulation associated with the BO is the main driver of WACE decadal variability over the past century.
|
|
| 15. |
- Jiang, S., et al.
(författare)
-
Unraveling dislocation-type evolution dominated strain hardening in laminated Ti/Nb composites
- 2022
-
Ingår i: Materials Science & Engineering. - : ELSEVIER SCIENCE SA. - 0921-5093 .- 1873-4936. ; 851
-
Tidskriftsartikel (refereegranskat)abstract
- Dislocation behavior in laminated metallic composites (LMCs) plays a pivotal role in strength and ductility of bulk materials. Here, we studied evolutions of geometrically necessary dislocations (GNDs) and statistically stored dislocations (SSDs) as well as their effects on strain hardening in the uniaxially deformed Ti/Nb LMCs fabricated by accumulative roll bonding plus the subsequent annealing. By combining in-situ neutron diffraction and ex-situ electron backscattered diffraction (EBSD) techniques, for the first time, we quantitatively reveal that dislocation evolutions in the laminates are independent of initial layer thickness within the micron scale. As the applied strain reaches the uniform elongation stage, GND density in Ti increases remarkably by an order of magnitude in all laminates, while that in Nb almost remains unchanged. Besides, the total dislocation density in Ti develops rapidly with deformation, whereas the SSD density does not increase monotonically. In Nb, both total dislocation density and SSD density increase significantly below 0.02 true strain, and gradually saturate in the late stage of strain hardening. During the whole plastic deformation, Nb bears more stress and dominates the global hardening because of the significant development of SSDs in this metal. Importantly, the strengthening induced by heterophase interfaces is more significant in the softer Ti in which GNDs are extensively activated, and SSDs only marginally contribute to the heterophase interface strengthening. These findings provide insights into the exploration of deformation mechanisms in materials with laminated and gradient structures, and also guide the development of LMCs with advanced mechanical properties.
|
|
| 16. |
- Jiang, W., et al.
(författare)
-
Methods for mammalian single cell research - a review
- 2019
-
Ingår i: Sheng wu gong cheng xue bao = Chinese journal of biotechnology. - 1000-3061. ; 35:1, s. 27-39
-
Tidskriftsartikel (refereegranskat)abstract
- 近年来，生命科学和医学的基础研究已深入到单细胞阶段。单细胞研究为揭示生命活动的基本规律、探索细胞异质性、提高对疾病发病机制的认识等提供了重要的线索和依据，同时，单细胞技术已被应用于日常实践中，如法医学和临床生殖医学。单细胞研究中使用的技术也在不断变化，并越来越复杂。文中主要介绍单细胞分离技术，包括手工挑取、激光捕获显微切割和微流控技术，以及单细胞中DNA、RNA 和蛋白质分析方法的各种技术。此外，文中总结了近年来生命科学和医学领域的主要单细胞研究成果，讨论了单细胞相关技术和研究的不足，并介绍了其未来的发展方向。. Basic research in life science and medicine has dug into single cell level in recent years. Single-cell analysis offers to understand life from diverse perspectives and is used to profile cell heterogeneity to investigate mechanism of diseases. Single cell technologies have also found applications in forensic medicine and clinical reproductive medicine, while the techniques are rapidly evolving and have become more and more sophisticated. In this article, we reviewed various single cell isolation techniques and their pros and cons, including manual cell picking, laser capture microdissection and microfluidics, as well as analysis methods for DNA, RNA and protein in single cell. In addition, we summarized major up-to-date single cell research achievements and their potential applications.
|
|
| 17. |
- Jiang, Wenyu, et al.
(författare)
-
Resolving Quantum Interference Black Box through Attosecond Photoionization Spectroscopy
- 2023
-
Ingår i: Physical Review Letters. - 0031-9007. ; 131:20
-
Tidskriftsartikel (refereegranskat)abstract
- Multiphoton light-matter interactions invoke a so-called "black box"in which the experimental observations contain the quantum interference between multiple pathways. Here, we employ polarization-controlled attosecond photoelectron metrology with a partial wave manipulator to deduce the pathway interference within this quantum 'black box"for the two-photon ionization of neon atoms. The angle-dependent and attosecond time-resolved photoelectron spectra are measured across a broad energy range. Two-photon phase shifts for each partial wave are reconstructed through the comprehensive analysis of these photoelectron spectra. We resolve the quantum interference between the degenerate p→d→p and p→s→p two-photon ionization pathways, in agreement with our theoretical simulations. Our approach thus provides an attosecond time-resolved microscope to look inside the "black box"of pathway interference in ultrafast dynamics of atoms, molecules, and condensed matter.
|
|
| 18. |
|
|
| 19. |
|
|
| 20. |
- Wu, Xifeng, et al.
(författare)
-
Genetic variation in the prostate stem cell antigen gene PSCA confers susceptibility to urinary bladder cancer.
- 2009
-
Ingår i: Nature genetics. - : Springer Science and Business Media LLC. - 1546-1718 .- 1061-4036. ; 41:9, s. 991-5
-
Tidskriftsartikel (refereegranskat)abstract
- We conducted a genome-wide association study on 969 bladder cancer cases and 957 controls from Texas. For fast-track validation, we evaluated 60 SNPs in three additional US populations and validated the top SNP in nine European populations. A missense variant (rs2294008) in the PSCA gene showed consistent association with bladder cancer in US and European populations. Combining all subjects (6,667 cases, 39,590 controls), the overall P-value was 2.14 x 10(-10) and the allelic odds ratio was 1.15 (95% confidence interval 1.10-1.20). rs2294008 alters the start codon and is predicted to cause truncation of nine amino acids from the N-terminal signal sequence of the primary PSCA translation product. In vitro reporter gene assay showed that the variant allele significantly reduced promoter activity. Resequencing of the PSCA genomic region showed that rs2294008 is the only common missense SNP in PSCA. Our data identify rs2294008 as a new bladder cancer susceptibility locus.
|
|
| 21. |
- Yan, Xing, et al.
(författare)
-
Cooperative simultaneous inversion of satellite-based real-time PM2.5 and ozone levels using an improved deep learning model with attention mechanism
- 2023
-
Ingår i: Environmental Pollution. - : Elsevier BV. - 0269-7491. ; 327
-
Tidskriftsartikel (refereegranskat)abstract
- Ground-level fine particulate matter (PM2.5) and ozone (O3) are air pollutants that can pose severe health risks. Surface PM2.5 and O3 concentrations can be monitored from satellites, but most retrieval methods retrieve PM2.5 or O3 separately and disregard the shared information between the two air pollutants, for example due to common emission sources. Using surface observations across China spanning 2014–2021, we found a strong relationship between PM2.5 and O3 with distinct spatiotemporal characteristics. Thus, in this study, we propose a new deep learning model called the Simultaneous Ozone and PM2.5 inversion deep neural Network (SOPiNet), which allows for daily real-time monitoring and full coverage of PM2.5 and O3 simultaneously at a spatial resolution of 5 km. SOPiNet employs the multi-head attention mechanism to better capture the temporal variations in PM2.5 and O3 based on previous days’ conditions. Applying SOPiNet to MODIS data over China in 2022, using 2019–2021 to construct the network, we found that simultaneous retrievals of PM2.5 and O3 improved the performance compared with retrieving them independently: the temporal R2 increased from 0.66 to 0.72 for PM2.5, and from 0.79 to 0.82 for O3. The results suggest that near-real time satellite-based air quality monitoring can be improved by simultaneous retrieval of different but related pollutants. The codes of SOPiNet and its user guide are freely available online at https://github.com/RegiusQuant/ESIDLM.
|
|
| 22. |
- Yu, Evan Y W, et al.
(författare)
-
A data mining approach to investigate food groups related to incidence of bladder cancer in the BLadder cancer Epidemiology and Nutritional Determinants International Study.
- 2020
-
Ingår i: British Journal of Nutrition. - : Cambridge University Press. - 0007-1145 .- 1475-2662. ; 124:6, s. 611-619
-
Tidskriftsartikel (refereegranskat)abstract
- At present, analysis of diet and bladder cancer (BC) is mostly based on the intake of individual foods. The examination of food combinations provides a scope to deal with the complexity and unpredictability of the diet and aims to overcome the limitations of the study of nutrients and foods in isolation. This article aims to demonstrate the usability of supervised data mining methods to extract the food groups related to BC. In order to derive key food groups associated with BC risk, we applied the data mining technique C5.0 with 10-fold cross-validation in the BLadder cancer Epidemiology and Nutritional Determinants study, including data from eighteen case-control and one nested case-cohort study, compromising 8320 BC cases out of 31 551 participants. Dietary data, on the eleven main food groups of the Eurocode 2 Core classification codebook, and relevant non-diet data (i.e. sex, age and smoking status) were available. Primarily, five key food groups were extracted; in order of importance, beverages (non-milk); grains and grain products; vegetables and vegetable products; fats, oils and their products; meats and meat products were associated with BC risk. Since these food groups are corresponded with previously proposed BC-related dietary factors, data mining seems to be a promising technique in the field of nutritional epidemiology and deserves further examination.
|
|
| 23. |
- Yu, Y. F., et al.
(författare)
-
Compound climate extremes in China: Trends, causes, and projections
- 2023
-
Ingår i: Atmospheric Research. - : Elsevier BV. - 0169-8095. ; 286
-
Tidskriftsartikel (refereegranskat)abstract
- Human society and ecosystems are impacted by climate extremes more than by climate averages. In contrast with climate extremes that are driven by individual climatic variables, compound climate extremes stem from a combination of multiple climatic drivers and usually lead to more severe risks than the former extremes do. The influences of the drivers for compound climate extremes are strengthening under global warming. Firstly, this review details the development of the definition of compound climate extremes over recent years and describes different types of events, such as compound drought and heatwave extremes (CDHEs), compound day and night heat extremes (CDNHEs), and compound flooding (CF). Secondly, historical trends in compound climate ex-tremes in China over the past half-century, and projections of future trends under different scenarios, are dis-cussed. For example, this study points out that a large part of China has experienced longer, stronger, and more frequent CDHEs than other parts of the country. CDHEs have followed a significantly increasing trend since the 1990s, and this trend is projected to strengthen further under different scenarios in the future. Thirdly, this study reviews different potential causes for compound climate extremes, including the internal variability of the climate system (e.g., land and atmosphere feedbacks, large-scale circulation patterns) and external anthropo-genic forcings (e.g., urbanization and anthropogenic emissions). In this study, we summarize risks from different perspectives by considering interactions between hazards, vulnerability, and exposure. Many studies show that risks to infrastructural damage and population exposure are projected to increase in the future, and that crop yields and ecosystem gross primary production are likely to reduce. Finally, we generalize our study and show that there is an urgent need for a comprehensive study of different combinations of compound events. We argue that it is important that we understand the key dynamic and thermal processes that are modulated by specific drivers and investigate the uncertainty in the projected variabilities for compound climate extremes. This re-quires interdisciplinary collaboration and will allow appropriate risk adaptation strategies to be developed. There has been great progress in research into compound climate extremes; however, an improved understanding of the mechanisms and risks is necessary as a theoretical basis for more effective climate adaptation policies.
|
|
| 24. |
|
|
| 25. |
|
|
