| 1. |
- Johnsson, Anna-Ida, et al.
(författare)
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Specific SCAR markers and multiplex real-time PCR for quantification of two Trichoderma biocontrol strains in environmental samples
- 2011
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Ingår i: BioControl. - : Springer Science and Business Media LLC. - 1386-6141 .- 1573-8248. ; 56, s. 903-913
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Tidskriftsartikel (refereegranskat)abstract
- Several strains from the genus Trichoderma (Ascomycetes, Hypocreales) are commercially used as biocontrol agents, e.g. in formulations containing the two Trichoderma strains IMI206039 (Hypocrea parapilulifera B.S. Lu, Druzhinina & Samuels) and IMI206040 (T. atroviride P. Karst). To quantify the presence of the two isolates after application, we developed primers for SCAR markers (Sequence-Characterised Amplified Region). In order to quantify both fungal strains simultaneously, we also designed fluorophore-labelled probes distinguishing the two strains, to be used in combination with the SCAR primers. In incubations of two different soils, artificially inoculated and maintained under controlled conditions, the quantification through amplification with the SCAR markers in qPCR and through colony-forming units from plate counting correlated well. Further tests of the markers on samples taken from a golf green treated with a product containing both strains indicated that the two biocontrol strains did not establish, either on the golf green or in the surrounding area.
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| 2. |
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| 3. |
- Von Rosen, Dietrich
(författare)
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Non-negative estimation of variance components in heteroscedastic one-way random-effects ANOVA models
- 2010
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Ingår i: Statistics. - : Informa UK Limited. - 0233-1888 .- 1029-4910. ; 44, s. 557-569
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Tidskriftsartikel (refereegranskat)abstract
- There is a considerable amount of literature dealing with inference about the parameters in a heteroscedastic one-way random-effects ANOVA model. In this paper, we primarily address the problem of improved quadratic estimation of the random-effect variance component. It turns out that such estimators with a smaller mean squared error compared with some standard unbiased quadratic estimators exist under quite general conditions. Improved estimators of the error variance components are also established.
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| 4. |
- Skovsgaard, Jens Peter
(författare)
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Bog om tarmvridrøn
- 2013
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Ingår i: Skoven. - 0106-8539. ; 45, s. 551-551
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Annan publikation (övrigt vetenskapligt/konstnärligt)abstract
- Book review N. Mayer & R.T. Klumpp (ed.) 2013: Elsbeere in Österreich – Monographie. Verein zur Erhaltung, Pflege und Vermarktung der Elsbeere - Genussregion Wiesenwienerwald Elsbeere, Michelbach.
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| 5. |
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| 6. |
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| 7. |
- Messing, Ingmar
(författare)
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Land and land use : Natural preconditions
- 2011
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Ingår i: Agriculture and Forestry in Sweden since 1900- a cartographic description. - 9789187760617 ; , s. 14-22
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Bokkapitel (övrigt vetenskapligt/konstnärligt)
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| 8. |
- Messing, Ingmar
(författare)
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Marken i Sverige : Naturliga förutsättningar
- 2011
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Ingår i: Sveriges nationalatlas. Jordbruk och skogsbruk i Sverige sedan år 1900: en kartografisk beskrivning. - 9789187760594 ; , s. 14-22
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Bokkapitel (övrigt vetenskapligt/konstnärligt)
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| 9. |
- Thulin, Carl-Gustaf
(författare)
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Utsättning av arter : möjlighet för bevarandebiologin
- 2010
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Ingår i: Biodiverse. - 1401-5064. ; 15, s. 8-9
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Tidskriftsartikel (populärvet., debatt m.m.)abstract
- Ett halvöppet, lövträdsdominerat landskap med betande hjortdjur, visenter, förvildad nötboskap och vildsvin, jagade av livskraftiga populationer av varg, björn och lo. Utopier och vilda fantasier? Kanske i delar, men något håller definitivt på att hända med bevarandet, återskapandet och skötseln av de europeiska vildmarkerna
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| 10. |
- Tunon, Håkan, et al.
(författare)
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Kulturarv och hållbar utveckling
- 2010
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Ingår i: Bebyggelsehistorisk tidskrift. - : Föreningen Bebyggelsehistorisk tidskrift. - 0349-2834 .- 2002-3812. ; , s. 99–106-
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Tidskriftsartikel (övrigt vetenskapligt/konstnärligt)
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| 11. |
- Benavent-Celma, Clara, et al.
(författare)
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Current practices and emerging possibilities for reducing the spread of oomycete pathogens in terrestrial and aquatic production systems in the European Union
- 2022
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Ingår i: Fungal Biology Reviews. - : Elsevier. - 1749-4613 .- 1878-0253. ; 40, s. 19-36
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Tidskriftsartikel (refereegranskat)abstract
- Diseases caused by oomycete pathogens are a global threat to forestry, agriculture and aquaculture. Because of their complex life cycles, characterised by dormant resting structures that enable their survival for years under hostile environmental conditions, reducing the spread of oomycetes is a challenging task. In this review, we present an overview of this challenge, starting from the need to understand the natural and anthropogenic dispersal pathways of these pathogens. Focusing on the European Union, we explore current legislation that forms a backbone for biosecurity protocols against the spread of oomycetes through trade and transport. We discuss the options for prevention, containment and long-term management of oomycetes in different production settings, emphasising the importance of prevention as the most cost-efficient strategy to reduce the spread of these pathogens. Finally, we highlight some of the new and emerging technologies and strategies as potential tools in the integrated pest management of animal and plant diseases caused by oomycetes. We emphasise the urgency of actions to halt the global spread of these pathogens.
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| 12. |
- Ritter, Camila, et al.
(författare)
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Biodiversity assessments in the 21st century: The potential of insect traps to complement environmental samples for estimating eukaryotic and prokaryotic diversity using high-throughput DNA metabarcoding.
- 2019
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Ingår i: Genome. - : Canadian Science Publishing. - 1480-3321 .- 0831-2796. ; 62:3, s. 147-159
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Tidskriftsartikel (refereegranskat)abstract
- The rapid loss of biodiversity, coupled with difficulties in species identification, call for innovative approaches to assess biodiversity. Insects make up a substantial proportion of extant diversity and play fundamental roles in any given ecosystem. To complement morphological species identification, new techniques such as metabarcoding make it possible to quantify insect diversity and insect-ecosystem interactions through DNA sequencing. Here we examine the potential of bulk insect samples (i.e., containing many non-sorted specimens) to assess prokaryote and eukaryote biodiversity and to complement the taxonomic coverage of soil samples. We sampled 25 sites on three continents and in various ecosystems, collecting insects with Slam-traps (Brazil) and Malaise-traps (South Africa and Sweden). We then compared our diversity estimates with the results obtained with biodiversity data from soil samples from the same localities. We found a largely different taxonomic composition between the soil and insect samples, testifying to the potential of bulk insect samples to complement soil samples. Finally, we found that non-destructive DNA extraction protocols, which preserve insect specimens for morphological studies, constitute a promising choice for cost-effective biodiversity assessments. We propose that the sampling and sequencing of insect samples should become a standard complement for biodiversity studies based on environmental DNA.
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| 13. |
- Crous, P. W., et al.
(författare)
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Fusarium : more than a node or a foot-shaped basal cell
- 2021
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Ingår i: Studies in mycology. - : CENTRAALBUREAU SCHIMMELCULTURE. - 0166-0616 .- 1872-9797. ; :98
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Tidskriftsartikel (refereegranskat)abstract
- Recent publications have argued that there are potentially serious consequences for researchers in recognising distinct genera in the terminal fusarioid clade of the family Nectriaceae. Thus, an alternate hypothesis, namely a very broad concept of the genus Fusarium was proposed. In doing so, however, a significant body of data that supports distinct genera in Nectriaceae based on morphology, biology, and phylogeny is disregarded. A DNA phylogeny based on 19 orthologous protein-coding genes was presented to support a very broad concept of Fusarium at the F1 node in Nectriaceae. Here, we demonstrate that re-analyses of this dataset show that all 19 genes support the F3 node that represents Fusarium sensu stricto as defined by F. sambucinum (sexual morph synonym Gibberella pulicaris). The backbone of the phylogeny is resolved by the concatenated alignment, but only six of the 19 genes fully support the F1 node, representing the broad circumscription of Fusarium. Furthermore, a re-analysis of the concatenated dataset revealed alternate topologies in different phylogenetic algorithms, highlighting the deep divergence and unresolved placement of various Nectriaceae lineages proposed as members of Fusarium. Species of Fusarium s. str. are characterised by Gibberella sexual morphs, asexual morphs with thin- or thick-walled macroconidia that have variously shaped apical and basal cells, and trichothecene mycotoxin production, which separates them from other fusarioid genera. Here we show that the Wollenweber concept of Fusarium presently accounts for 20 segregate genera with clear-cut synapomorphic traits, and that fusarioid macroconidia represent a character that has been gained or lost multiple times throughout Nectriaceae. Thus, the very broad circumscription of Fusarium is blurry and without apparent synapomorphies, and does not include all genera with fusarium-like macroconidia, which are spread throughout Nectriaceae (e.g., Cosmosporella, Macroconia, Microcera). In this study four new genera are introduced, along with 18 new species and 16 new combinations. These names convey information about relationships, morphology, and ecological preference that would otherwise be lost in a broader definition of Fusarium. To assist users to correctly identify fusarioid genera and species, we introduce a new online identification database, Fusarioid-ID, accessible at www.fusarium.org. The database comprises partial sequences from multiple genes commonly used to identify fusarioid taxa (act1, CaM, his3, rpb1, rpb2, tef1, tub2, ITS, and LSU). In this paper, we also present a nomenclator of names that have been introduced in Fusarium up to January 2021 as well as their current status, types, and diagnostic DNA barcode data. In this study, researchers from 46 countries, representing taxonomists, plant pathologists, medical mycologists, quarantine officials, regulatory agencies, and students, strongly support the application and use of a more precisely delimited Fusarium (= Gibberella) concept to accommodate taxa from the robust monophyletic node F3 on the basis of a well-defined and unique combination of morphological and biochemical features. This F3 node includes, among others, species of the F. fujikuroi, F. incarnatum-equiseti, F. oxysporum, and F. sambucinum species complexes, but not species of Bisifusarium [F. dimerum species complex (SC)], Cyanonectria (F. buxicola SC), Geejayessia (F. staphyleae SC), Neocosmospora (F. solani SC) or Rectifusarium (F. ventricosum SC). The present study represents the first step to generating a new online monograph of Fusarium and allied fusarioid genera (www.fusarium.org).
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| 14. |
- Mattsson, Eskil, 1981, et al.
(författare)
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Quantification of carbon stock and tree diversity of homegardens in a dry zone area of Moneragala District, Sri Lanka
- 2015
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Ingår i: Agroforestry Systems. - : Springer Science and Business Media LLC. - 1572-9680 .- 0167-4366. ; 89:3, s. 435-445
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Tidskriftsartikel (refereegranskat)abstract
- Homegarden agroforestry systems are suggested to hold a large potential for climate change mitigation and adaptation. This is due to their multifunctional role in providing income, food and ecosystem services while decreasing pressure on natural forests and hence saving and storing carbon. In this paper, above-ground biomass carbon and tree species diversity of trees was quantified in homegardens around two villages in the dry south-eastern part of Moneragala district of Sri Lanka. A total of 45 dry zone homegardens were sampled on size, diameter at breast height, tree height and species diversity. Using allometric equations, we find a mean above-ground biomass stock of 13 mega grams of carbon per hectare (Mg C ha−1) with a large range among homegardens (1–56 Mg C ha−1, n = 45) due to a variation of tree diversity and composition between individual homegardens. Mean above-ground carbon stock per unit area was higher in small homegardens (0.2 ha, 26 Mg C ha−1, n = 11) and statistically different compared to medium (0.4–0.8 ha, 9 Mg C ha−1, n = 27) and large (1.0–1.2 ha, 8 Mg C ha−1, n = 7) homegardens. In total, 4,278 trees were sampled and 70 tree species identified and recorded. The Shannon Wiener index were used to evaluate diversity per homegarden and ranged from 0.76 to 3.01 with a mean value of 2.05 ± 0.07 indicating a medium evenly distributed diversity of sampled tree species. The results show a vast heterogeneity in terms of carbon stock and tree diversity within the less studied dry zone homegardens; results that contribute to more knowledge of their expansion potential as well as climate mitigation and adaptation potential. The results are also useful for whether homegardens should be considered to be included as an activity to enhance natural forest cover within Sri Lanka’s newly commenced UN-REDD National Programme.
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| 15. |
- Norman, Johan
(författare)
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Skogen – en plats för upplevelser
- 2011
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Ingår i: Grön Entreprenör, Naturupplevelse och hälsa – forskningen visar vägen. - 9789157690364 ; , s. 62-75
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Bokkapitel (populärvet., debatt m.m.)
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| 16. |
- Palsdottir, Anna Maria, et al.
(författare)
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Nature-Based Therapeutic Interventions
- 2011
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Ingår i: Forests, Trees and Human Health. - Dordrecht : Springer Netherlands. - 9789048198054 ; , s. 309-342
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Bokkapitel (övrigt vetenskapligt/konstnärligt)
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| 17. |
- Salomon, Björn, et al.
(författare)
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Evolutionary process of Hordeum brachyantherum 6x and related tetraploid species revealed by nuclear DNA sequences
- 2009
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Ingår i: Breeding Science. - : Japanese Society of Breeding. - 1344-7610 .- 1347-3735. ; 59, s. 611-616
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Tidskriftsartikel (refereegranskat)abstract
- A hexaploid form of Hordeum brachlyantherum ssp. brachyantherum was discovered in California in 1980, and its origin has since been studied over the past three decades. We applied EF-G, a nuclear DNA sequence, to infer the parents of the hexaploid form. In polyploid taxa, amplified DNAs were cloned into a vector, and EF-G copies were amplified from the colonies by PCR and digested with restriction enzymes to separate different types. Phylogenetic analysis was performed based on the DNA sequences. The result showed that H. brachyantherum ssp. brachyantherum 6x and 4x carried one identical DNA sequence of 910 bp, and had closely related DNA sequences of 931 bp. H. brachyantherum ssp. brachyantherum 6x and H. marinum ssp. gussoneanum 2x shared one identical DNA sequence of 915 bp. From these results we hypothesized that H. brachyantherum ssp. brachyantherum 6x has evolved by an outcrossing between H. marinum ssp. gussoneanum 2x and H. brachyantherum ssp. brachyantherum 4x, followed by a chromosome doubling. Our results also indicate that H. marinum was involved in the polyploidization of H. secalinum, H. capense, and H. marinum. The origins of H. jubatum and H. depressum are discussed.
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| 18. |
- Elbakidze, Marine, et al.
(författare)
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Perceived benefits from agroforestry landscapes across North-Eastern Europe : What matters and for whom?
- 2021
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Ingår i: Landscape and Urban Planning. - : Elsevier BV. - 0169-2046 .- 1872-6062. ; 209
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Tidskriftsartikel (refereegranskat)abstract
- Agroforestry landscapes are crucial to human wellbeing; however, they are in sharp decline across Europe. Improved understanding of the complexity of agroforestry landscapes within different biophysical, social cultural, economic and governance contexts is essential for designing effective policy and management interventions that are more tightly aligned with societal expectations and aspirations. This paper identifies and compares values that people attribute to agroforestry landscapes across North-Eastern Europe, using case studies in Sweden, Latvia, Belarus, and the Russian Federation. We apply the multiple-value approach developed for the conceptual framework of the Intergovernmental Platform on Biodiversity and Ecosystem Services to an assessment of agroforestry landscapes. Using data from a total of 1634 face-to-face structured interviews, we (i) analyse and explore the preferences of diverse groups of respondents for agroforestry landscapes; (ii) identify a broad range of nature's contributions to people (NCP) that were attributed to agroforestry landscapes by respondents; and, (iii) analyse values of agroforestry landscapes across different contexts in NorthEastern Europe. We found that a highly heterogenous group of people - broadly irrespective of age, education, gender, place of residence, as well as political, economic, or social-cultural context - perceive agroforestry landscapes to be important to their quality of life. Respondents attributed multiple NCP to agroforestry landscapes, and nonmaterial NCP are the most frequently assigned in all four countries. An absolute majority of respondents across all case studies considered relational values of agroforestry landscapes to be important for their quality of life with identity as the most often associated with agroforestry landscapes. We discuss how relational values might be incorporated in policies and practices related to agroforestry landscapes in North-Eastern Europe.
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| 19. |
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| 20. |
- Lennartsson, Tommy, et al.
(författare)
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Skötselplanering i skogsbetesmarker : vägledning
- 2021
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Bok (övrigt vetenskapligt/konstnärligt)abstract
- För endast ett sekel sedan täckte skogsbetesmarker och andra naturbeten mycket stora arealer och utgjorde en grundförutsättning för landets försörjning och livsmedelsproduktion. Formade av århundraden av bete och lokalt mångbruk fanns en bred palett av skogsbetesmarker. Idag är det svårt att föreställa sig hur ett visst skogsbete kan ha sett ut och nyttjats, men det är ändå det vi behöver veta så mycket som möjligt om, för att förstå vad som har gett upphov till de natur- och kulturmiljövärden som finns kvar idag.
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| 21. |
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Unraveling the logics of landscape
- 2014
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Samlingsverk (redaktörskap) (övrigt vetenskapligt/konstnärligt)abstract
- Despite conceptual oscillations through times, the concept of landscape remains highly subjective, whereupon unraveling its 'logics' opens up to a plurality of interpretations. Accordingly, by focusing on the interconnections present in the non-haphazard production of landscape, this publication elaborates on how the rural landscape is valued, monitored, changed, harbored, used and misused, be it through actions, representations or metaphors. This book covers a broad range of topics, with contributions from scholars from more than 30 countries.
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| 22. |
- Abarenkov, Kessy, et al.
(författare)
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Protax-fungi: A web-based tool for probabilistic taxonomic placement of fungal internal transcribed spacer sequences
- 2018
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Ingår i: New Phytologist. - : Wiley. - 0028-646X .- 1469-8137. ; 220:2, s. 517-525
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Tidskriftsartikel (refereegranskat)abstract
- © 2018 New Phytologist Trust. Incompleteness of reference sequence databases and unresolved taxonomic relationships complicates taxonomic placement of fungal sequences. We developed Protax-fungi, a general tool for taxonomic placement of fungal internal transcribed spacer (ITS) sequences, and implemented it into the PlutoF platform of the UNITE database for molecular identification of fungi. With empirical data on root- and wood-associated fungi, Protax-fungi reliably identified (with at least 90% identification probability) the majority of sequences to the order level but only around one-fifth of them to the species level, reflecting the current limited coverage of the databases. Protax-fungi outperformed the Sintax and Rdb classifiers in terms of increased accuracy and decreased calibration error when applied to data on mock communities representing species groups with poor sequence database coverage. We applied Protax-fungi to examine the internal consistencies of the Index Fungorum and UNITE databases. This revealed inconsistencies in the taxonomy database as well as mislabelling and sequence quality problems in the reference database. The according improvements were implemented in both databases. Protax-fungi provides a robust tool for performing statistically reliable identifications of fungi in spite of the incompleteness of extant reference sequence databases and unresolved taxonomic relationships.
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| 23. |
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| 24. |
- Carlsson, Anders
(författare)
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Plant oils as feedstock alternatives to petroleum - A short survey of potential oil crop platforms
- 2009
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Ingår i: Plant Breeding. - : Elsevier BV. - 0179-9541 .- 1439-0523. ; 91, s. 665-670
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Forskningsöversikt (refereegranskat)abstract
- Our society is highly depending on petroleum for its activities. About 90% is used as an energy source for transportation and for generation of heat and electricity and the remaining as feedstocks in the chemical industry. However, petroleum is a finite source as well as causing several environmental problems such as rising carbon dioxide levels in the atmosphere. Petroleum therefore needs to be replaced by alternative and sustainable sources. Plant oils and oleochemicals derived from them represent such alternative sources, which can deliver a substantial part of what is needed to replace the petroleum used as feedstocks.Plant derived feedstock oils can be provided by two types of oil qualities, multi-purpose and technical oils. Multi-purpose oils represent oil qualities that contain common fatty acids and that can be used for both food and feedstock applications. Technical oil qualities contain unusual fatty acids with special properties gained from their unique molecular structure and these types of oils should only be used for feedstock applications. As a risk mitigation strategy in the selection of crops, technical oil qualities should therefore preferably be produced by oil crop platforms dedicated for industrial usage. This review presents a short survey of oil crop platforms to be considered for either multi-purpose or technical oils production. Included among the former platforms are some of the major oil crops in cultivation such as oil palm, soybean and rapeseed. Among the later are those that could be developed into dedicated industrial platforms such as crambe, flax, cotton and Brassica carinata. The survey finishes off by highlighting the potential of substantial increase in plant oil production by developing metabolic flux platforms, which are starch crops converted into oil crops. (c) 2009 Elsevier Masson SAS. All rights reserved.
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| 25. |
- Erhagen, Björn, et al.
(författare)
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Temperature sensitivity of heterotrophic soil CO2 production increases with increasing carbon substrate uptake rate
- 2015
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Ingår i: Soil Biology and Biochemistry. - : Elsevier BV. - 0038-0717 .- 1879-3428. ; 80, s. 45-52
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Tidskriftsartikel (refereegranskat)abstract
- Temperature profoundly affects saprotrophic respiration rates, and carbon quality theory predicts that the rates' temperature Sensitivity should increase as the quality of the carbon source declines. However, reported relationships between saprotrophic respiration responses to temperature and carbon quality vary widely. Some of this variability may arise from confounding effects related to both substrate quality and substrate availability. The importance of these variables, as well as substrate diffusion and uptake rates, for the temperature sensitivity of saprotrophic respiration has been validated theoretically, but not empirically demonstrated. Thus, we tested effects of varying substrate uptake rates on the temperature sensitivity of organic carbon degradation. For this purpose we created a model system using the organic layer (O-horizon), of a boreal forest soil, specifically to test effects of varying monomer uptake and release rates. The addition of both monomers and polymers generally increased the temperature sensitivity of saprotrophic respiration. In response to added monomers, there was a linear increase in the temperature sensitivity of both substrate-induced respiration and the specific growth rate with increasing rate of substrate uptake as indicated by the CO2 production at 14 degrees C. Both of these responses diverge from those predicted by the carbon quality theory, but they provide the first empirical evidence consistent with model predictions demonstrating increased temperature sensitivity with increased uptake rate of carbon monomers over the cell membrane. These results may explain why organic material of higher carbon quality induces higher temperature responses than lower carbon quality compounds, without contradicting carbon quality theory.
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