| 1. |
- Munthe, Christian, 1962
(författare)
-
Precaution and Ethics: Handling risks, uncertainties and knowledge gaps in the regulation of new biotechnologies
- 2017
-
Bok (övrigt vetenskapligt/konstnärligt)abstract
- This volume outlines and analyses ethical issues actualized by applying a precautionary approach to the regulation of new biotechnologies. It presents a novel way of categorizing and comparing biotechnologies from a precautionary standpoint. Based on this, it addresses underlying philosophical problems regarding the ethical assessment of decision-making under uncertainty and ignorance, and discusses how risks and possible benefits of such technologies should be balanced from an ethical standpoint. It argues on conceptual and ethical grounds for a technology neutral regulation as well as for a regulation that not only checks new technologies but also requires old, inferior ones to be phased out. It demonstrates how difficult ethical issues regarding the extent and ambition of precautionary policies need to be handled by such a regulation, and presents an overarching framework for doing so.
|
|
| 2. |
- Sandin, Per, et al.
(författare)
-
Technology neutrality and regulation of agricultural biotechnology
- 2018
-
Ingår i: Professionals in food chains: ethics, rules and responsibility. EurSafe 2018, Vienna, Austria 13 – 16 June 2018 / edited by: Svenja Springer, Herwig Grimm. - Wageningen, Netherlands : Wageningen Academic Publishers. - 9789086863211
-
Konferensbidrag (refereegranskat)abstract
- Agricultural biotechnology, in particular genetically modified organisms (GMOs), is subject to regulation in many areas of the world, not least in the European Union (EU). A number of authors have argued that those regulatory processes are unfair, costly, and slow and that regulation therefore should move in the direction of increased ‘technology neutrality’. The issue is becoming more pressing, especially since new biotechnologies such as CRISPR increasingly blur the regulatory distinction between GMOs and non-GMOs. This paper offers a definition of technology neutrality, uses the EU GMO regulation as a starting point for exploring technology neutrality, and presents distinctions between variants of the call for technology neutral GMO regulation in the EU.
|
|
| 3. |
|
|
| 4. |
- Lillie, Mette, et al.
(författare)
-
Genomic signatures of 60 years of bidirectional selection for 8-week body weight in chickens
- 2018
-
Ingår i: Poultry Science. - : Elsevier BV. - 0032-5791 .- 1525-3171. ; 97:3, s. 781-790
-
Tidskriftsartikel (refereegranskat)abstract
- Sixty years, constituting 60 generations, have passed since the founding of the Virginia body weight lines, an experimental population of White Plymouth Rock chickens. Using a stringent breeding scheme for divergent 8-week body weight, the lines, which originated from a common founder population, have responded to bidirectional selection with an approximate 15-fold difference in the selected trait. They provide a model system to study the genetics of complex traits in general and the influences of artificial selection on quantitative genetic architectures in particular. As we reflect on the 60th anniversary of the initiation of the Virginia body weight lines, there is opportunity to discuss the findings obtained using different analytical and experimental genetic and genomic strategies and integrate them with a recent pooled genome resequencing dataset. Hundreds of regions across the genome show differentiation between the 2 lines, reinforcing previous findings that response to selection relied on standing variation across many genes and giving insights into the haplotype complexity underlying regions associated with body weight.
|
|
| 5. |
- Zubair, Muhammad
(författare)
-
Genetic variation, biochemical contents and wound healing activity of Plantago major
- 2012
-
Doktorsavhandling (övrigt vetenskapligt/konstnärligt)abstract
- Plantago major L. (greater plantain, common plantain) has been used as a wound healing remedy in different parts of the world for centuries. Different bioactive compounds have been proposed to contribute to the wound healing properties of this plant. The present study was undertaken to investigate the impact of some genetic and environmental factors on the wound healing activity of common plantain. Seeds of P. major were collected from five populations in different parts of Sweden, and were germinated and grown in a greenhouse. As expected for an inbreeding species, RAPD analyses demonstrated considerable between-population variation but very sparse within-population and within-subpopulation variation. Six major phenolic compounds were encountered in samples of P. major, four of which were identified for the first time in this thesis; PLMA 1–PLMA 4. Between-population and sub-population differences in the contents of these chemical compounds showed no correlation with RAPD-based estimates of genetic relatedness. The contents of these compounds differed greatly between different plant organs of P. major. The highest concentration of plantamajoside and PLMA 2 was found in leaves whereas the highest concentration of verbascoside was found in flower stalks and seeds. Contents were significantly higher in freeze-dried leaf samples compared to samples dried at higher temperatures. Both water and ethanol-based extracts of P. major leaves stimulated the cell proliferation and migration in an in vitro scratch assay, and also showed anti-inflammatory activity in an in vitro NF-kB assay with oral epithelial cell cultures. Similarly, these extracts stimulated wound healing activities in ex vivo tests using detached pig ears. Further breeding efforts aimed at developing P. major as a crop plant, and medicinal research aimed at elucidating and optimizing extracts with wound healing properties, are thus warranted.
|
|
| 6. |
- Roos, Jonas
(författare)
-
Verticillium longisporum and plant immunity responses in Arabidopsis
- 2014
-
Doktorsavhandling (övrigt vetenskapligt/konstnärligt)abstract
- Verticillium spp. are soil-borne ascomycete fungi belonging to a subgroup of Sordariomycetes, and the three major plant pathogens Verticillium longisporum, V. dahliae and V. albo-atrum cause disease on numerous plant species worldwide. In Sweden, V. longisporum poses a threat to Brassica oilseed crops, and is thus emphasized in this thesis. Here the early immune responses to V. longisporum in the model plant Arabidopsis and recent data on the V. longisporum genome are presented. Three genes of importance in the Arabidopsis–V. longisporum interaction were studied. The genes were identified via transcriptome and single nucleotide polymorphism (SNP) analysis. RabGAP22, a RabGTPase-regulating protein, was found to contribute to V. longisporum resistance. Pull-down assays revealed SERINE:GLYOXYLATE AMINOTRANSFERASE (AGT1) as an interacting partner during V. longisporum infection and the two proteins were shown to co-localize in the peroxisomes. Unexpectedly, a role for RabGAP22 was also found in stomatal immunity. The monoterpene synthase TPS23/27 was on the other hand found to contribute to fungal invasion, by triggering germination of V. longisporum conidia. The third gene codes for a nitrate/peptide transporter, NPF5.12. Pull-down experiments and fluorescent imaging revealed interaction between NPF5.12 and a major latex protein family member, NPFBP1. Implications in plant immunity processes of these three genes are further discussed. The genomes of two Swedish V. longisporum isolates were sequenced and found to have a size of approximately 70 Mb and harbor ~21,000 protein-coding genes. Initial analyses revealed that 86% of the V. longisporum genomes are shared with V. dahliae and V. albo-atrum, with a high extent of gene duplications. Large numbers of proteins were predicted to contain secretion motifs, and this group of proteins is presumed to play major roles in the interactions with V. longisporum host plants. In conclusion, this thesis work has revealed new fungal and plant host genes and thereby laid the basis for new plant breeding and disease protection strategies.
|
|
| 7. |
- Tengvall, Katarina, 1980-, et al.
(författare)
-
Bayesian model and selection signature analyses reveal risk factors for canine atopic dermatitis
- 2022
-
Ingår i: Communications Biology. - : Springer Nature. - 2399-3642. ; 5:1
-
Tidskriftsartikel (refereegranskat)abstract
- Canine atopic dermatitis is an inflammatory skin disease with clinical similarities to human atopic dermatitis. Several dog breeds are at increased risk for developing this disease but previous genetic associations are poorly defined. To identify additional genetic risk factors for canine atopic dermatitis, we here apply a Bayesian mixture model adapted for mapping complex traits and a cross-population extended haplotype test to search for disease-associated loci and selective sweeps in four dog breeds at risk for atopic dermatitis. We define 15 associated loci and eight candidate regions under selection by comparing cases with controls. One associated locus is syntenic to the major genetic risk locus (Filaggrin locus) in human atopic dermatitis. One selection signal in common type Labrador retriever cases positions across the TBC1D1 gene (body weight) and one signal of selection in working type German shepherd controls overlaps the LRP1B gene (brain), near the KYNU gene (psoriasis). In conclusion, we identify candidate genes, including genes belonging to the same biological pathways across multiple loci, with potential relevance to the pathogenesis of canine atopic dermatitis. The results show genetic similarities between dog and human atopic dermatitis, and future across-species genetic comparisons are hereby further motivated.
|
|
| 8. |
- Abreha, Kibrom Berhe, et al.
(författare)
-
Understanding the Sorghum–Colletotrichum sublineola interactions for enhanced host resistance
- 2021
-
Ingår i: Frontiers in Plant Science. - : Frontiers Media SA. - 1664-462X. ; 12
-
Forskningsöversikt (refereegranskat)abstract
- Improving sorghum resistance is a sustainable method to reduce yield losses due to anthracnose, a devastating disease caused by Colletotrichum sublineola. Elucidating the molecular mechanisms of sorghum–C. sublineola interactions would help identify biomarkers for rapid and efficient identification of novel sources for host-plant resistance improvement, understanding the pathogen virulence, and facilitating resistance breeding. Despite concerted efforts to identify resistance sources, the knowledge about sorghum–anthracnose interactions remains scanty. Hence, in this review, we presented an overview of the current knowledge on the mechanisms of sorghum-C. sublineola molecular interactions, sources of resistance for sorghum breeding, quantitative trait loci (QTL), and major (R-) resistance gene sequences as well as defense-related genes associated with anthracnose resistance. We summarized current knowledge about C. sublineola populations and its virulence. Illustration of the sorghum-C. sublineola interaction model based on the current understanding is also provided. We highlighted the importance of genomic resources of both organisms for integrated omics research to unravel the key molecular components underpinning compatible and incompatible sorghum–anthracnose interactions. Furthermore, sorghum-breeding strategy employing rapid sorghum germplasm screening, systems biology, and molecular tools is presented.
|
|
| 9. |
- Brhanie Mesfin, Haftom, et al.
(författare)
-
Novel GBS-Based SNP Markers for Finger Millet and Their Use in Genetic Diversity Analyses
- 2022
-
Ingår i: Frontiers in Genetics. - : Frontiers Media SA. - 1664-8021. ; 13
-
Tidskriftsartikel (refereegranskat)abstract
- Eleusine coracana (L.) Gaertn., commonly known as finger millet, is a multipurpose crop used for food and feed. Genomic tools are required for the characterization of crop gene pools and their genomics-led breeding. High-throughput sequencing-based characterization of finger millet germplasm representing diverse agro-ecologies was considered an effective method for determining its genetic diversity, thereby suggesting potential candidates for breeding. In this study, the genotyping-by-sequencing (GBS) method was used to simultaneously identify novel single nucleotide polymorphism (SNP) markers and genotype 288 finger millet accessions collected from Ethiopia and Zimbabwe. The accessions were characterized at individual and group levels using 5,226 bi-allelic SNPs, with a minimum allele frequency (MAF) of above 0.05, distributed across 2,500 scaffolds of the finger millet reference genome. The polymorphism information content (PIC) of the SNPs was 0.23 on average, and a quarter of them have PIC values over 0.32, making them highly informative. The grouping of the 288 accessions into seven populations based on geographic proximity and the potential for germplasm exchange revealed a narrow range of observed heterozygosity (Ho; 0.09-0.11) and expected heterozygosity (He) that ranged over twofold, from 0.11 to 0.26. Alleles unique to the different groups were also identified, which merit further investigation for their potential association with desirable traits. The analysis of molecular variance (AMOVA) revealed a highly significant genetic differentiation among groups of accessions classified based on the geographic region, country of origin, days to flowering, panicle type, and Al tolerance (p < 0.01). The high genetic differentiation between Ethiopian and Zimbabwean accessions was evident in the AMOVA, cluster, principal coordinate, and population structure analyses. The level of genetic diversity of finger millet accessions varies moderately among locations within Ethiopia, with accessions from the northern region having the lowest level. In the neighbor-joining cluster analysis, most of the improved cultivars included in this study were closely clustered, probably because they were developed using genetically less diverse germplasm and/or selected for similar traits, such as grain yield. The recombination of alleles via crossbreeding genetically distinct accessions from different regions of the two countries can potentially lead to the development of superior cultivars.
|
|
| 10. |
|
|
| 11. |
- Calleja-Rodriguez, Ainhoa
(författare)
-
Quantitative Genetics and Genomic Selection of Scots pine
- 2019
-
Doktorsavhandling (övrigt vetenskapligt/konstnärligt)abstract
- The final objective of tree improvement programs is to increase the frequency of favourable alleles in a population, for the traits of interest within the breeding programs. To achieve this, it is crucial to decompose the phenotypic variance accurately into its genetic and environmental components in order to obtain a precise estimation of genetic parameters and to increase genetic gains. The overall aim of this thesis was to increase the accuracy of genetic parameter estimation by incorporating new quantitative genetics models to the analysis of multiple traits in multiple trials of Scots pine, and to develop a genomic selection protocol to accelerate genetic gain. Factor analysis was incorporated to multivariate multi-environment analyses and it allowed to evaluate up to 19 traits simultaneously. As a result, precise patterns of genotype-by-environment interactions (G E) were observed for tree vitality and height; moreover, it was possible to detect the main driver of the G E: differences in temperature sum among sites. Traditional quantitative trait loci (QTL) analysis of phenotypic data was compared with the detection of QTL with estimated breeding values (EBV) for the first time in a three generation pedigree and, as outcome, it was noticed that if a QTL was associated to a EBV and to a phenotypic trait, the proportion of variance explained by the QTLEBV was higher than the QTL-phenotype. Additionally, several QTL were detected across several ages, which may make them suitable as candidates for early selection. Genomic selection (GS) could aid to reduce the breeding cycle by shortening the periods of progeny field testing, and consequently increasing genetic gains per year. Genomic predictions, including additive and non-additive effects through different prediction models were compared with traditional pedigree-based models; it was seen an overestimation of genetic parameters for pedigree-based models, even larger when nonadditive effects could not be discerned from additive and residual effects. Prediction accuracies and abilities of the genomic models were sufficient to achieve higher selection efficiencies and responses per year varying between 50-90% by shortening 50% the breeding cycle. For the selection of the top 50 individuals, higher gains were estimated if non-additive effects are incorporated to the models (7 – 117%).
|
|
| 12. |
- Dida, Mulatu Geleta, et al.
(författare)
-
Genetic Diversity within a Global Panel of Durum Wheat (Triticum durum) Landraces and Modern Germplasm Reveals the History of Alleles Exchange
- 2017
-
Ingår i: Frontiers in Plant Science. - : Frontiers Media SA. - 1664-462X. ; 8
-
Tidskriftsartikel (refereegranskat)abstract
- Durum wheat is the 10th most important crop in the world, and its use traces back to the origin of agriculture. Unfortunately, in the last century only part of the genetic diversity available for this species has been captured in modern varieties through breeding. Here, the population structure and genetic diversity shared among elites and landraces collected from 32 countries was investigated. A total of 370 entries were genotyped with Axiom 35K array to identify 8,173 segregating single nucleotide polymorphisms (SNPs). Of these, 500 were selected as highly informative with a PIC value above 0.32 and used to test population structure via DAPC, STRUCTURE, and neighbor joining tree. A total of 10 sub-populations could be identified, six constituted by modern germplasm and four by landraces of different geographical origin. Interestingly, genomic comparison among groups indicated that Middle East and Ethiopia had the lowest level of allelic diversity, while breeding programs and landraces collected outside these regions were the richest in rare alleles. Further, phylogenetic analysis among landraces indicated that Ethiopia might represent a second center of origin of durum wheat, rather than a second domestication site as previously believed. Together, the analyses carried here provide a global picture of the available genetic diversity for this crop and shall guide its targeted use by breeders.
|
|
| 13. |
- Eriksson, Dennis, et al.
(författare)
-
Editorial: Leeway to operate with plant genetic resources
- 2020
-
Ingår i: Frontiers in Plant Science. - : Frontiers Media SA. - 1664-462X. ; 11
-
Tidskriftsartikel (refereegranskat)abstract
- Editorial on the Research Topic Leeway to Operate With Plant Genetic Resources Different legal frameworks are applicable to the use of genetic resources (GR). These can broadly be categorized into (1) access and benefit-sharing (ABS), (2) biosafety aspects related to the technologies for improving the genetic material, and (3) intellectual property (IP) systems including plant variety rights (PVR) and patents specific to the plant innovation sector. With scientific and technical progress in research and breeding, as well as expanding internationalization, legal frameworks have become increasingly complex in the past few decades. In this context, the Research Topic “Leeway to operate with plant genetic resources” addresses the latest and most pertinent legalissues related to the use of GR in plant research and breeding.The contributions are summarized here and put into the larger societal and legal context that modern-day plant geneticists are facing.
|
|
| 14. |
- Eriksson, Dennis, et al.
(författare)
-
Overview and Breeding Strategies of Table Potato Production in Sweden and the Fennoscandian Region
- 2016
-
Ingår i: Potato Research. - : Springer Science and Business Media LLC. - 0014-3065 .- 1871-4528. ; 59, s. 279-294
-
Tidskriftsartikel (refereegranskat)abstract
- Recent reductions in the public commitment to potato breeding in Sweden, Norway and Finland call for an evaluation of the current situation regarding the commercial basis for, and structure of, potato breeding in these countries. We here review the extent of cultivation, processing and consumption of table potato in Sweden, as well as provide an overview of the potato breeding tools and programmes in the three countries. We then discuss various strategies to provide long-term stability and increase the impact of public potato breeding, based on the similar overall conditions for potato cultivation across the Fennoscandian region. The conclusions are twofold; first, an increased long-term funding of the public potato breeding programmes is necessary to maintain a minimum level of material, and second, a coordination of the breeding activities in the Fennoscandian region would be of great benefit to all involved stakeholders and allow an enhancement of the current national breeding programmes. In addition, we propose a minimum first field year population size for potato breeding.
|
|
| 15. |
- Ghasemkhani, Marjan
(författare)
-
Genetic basis for resistance against fruit tree canker in apple
- 2012
-
Rapport (övrigt vetenskapligt/konstnärligt)abstract
- Neonectria ditissima (formerly Neonectria galligena, anamorph Cylindrocarpon heteronema) is the causal agent of fruit tree canker which is regarded as a serious economic problem in horticulture. This fungus causes notable damage to apple trees and it is very important in some regions, especially North western Europe, where it can result in death of spur shoots and branches. Although it occurs in a wide range of temperatures, it is associated with wet weather and climate has an important effect on the geographic distribution. The fungus produces conidia and ascospores, both of which are dispersed and cause infection during prolonged periods of rainy weather. Also, spores produced on the infected wood can act as an infection source in the orchards. The fungus can therefore be introduced into new orchards with infected planting material from other orchards or tree nurseries. Chemical and mechanical control like spraying of fungicides, covering wounds with paint, and cutting out infected branches, do not prevent the occurrence of epidemics. Breeding cultivars with a high level of resistance towards canker would be of great help towards the avoidance of this disease. Apple cultivars show variable levels of partial resistance to the fungus, whereas complete resistance has not yet been reported and no major genes have been identified. Therefore, apple genotypes with comparatively high levels of genetically determined partial resistance should be identified for use in apple breeding.
|
|
| 16. |
- Hammenhag, Cecilia, et al.
(författare)
-
Novel Expressed Sequence Tag-Derived and Other Genomic Simple Sequence Repeat Markers Revealed Genetic Diversity in Ethiopian Finger Millet Landrace Populations and Cultivars
- 2021
-
Ingår i: Frontiers in Plant Science. - : Frontiers Media SA. - 1664-462X. ; 12
-
Tidskriftsartikel (refereegranskat)abstract
- Finger millet (Eleusine coracana (L.) Geartn.) is a self-pollinating amphidiploid crop cultivated with minimal input for food and feed, as well as a source of income for small-scale farmers. To efficiently assess its genetic diversity for conservation and use in breeding programs, polymorphic DNA markers that represent its complex tetraploid genome have to be developed and used. In this study, 13 new expressed sequence tag-derived simple sequence repeat (EST-SSR) markers were developed based on publicly available finger millet ESTs. Using 10 polymorphic SSR markers (3 genomic and 7 novel EST-derived), the genetic diversity of 55 landrace accessions and 5 cultivars of finger millet representing its major growing areas in Ethiopia was assessed. In total, 26 alleles were detected across the 10 loci, and the average observed number of alleles per locus was 5.6. The polymorphic information content (PIC) of the loci ranged from 0.045 (Elco-48) to 0.71 (UGEP-66). The level of genetic diversity did not differ much between the accessions with the mean gene diversity estimates ranging only from 0.44 (accession 216054) to 0.68 (accession 237443). Similarly, a narrow range of variation was recorded at the level of regional states ranging from 0.54 (Oromia) to 0.59 (Amhara and Tigray). Interestingly, the average gene diversity of the landrace accessions (0.57) was similar to that of the cultivars (0.58). The analysis of molecular variance (AMOVA) revealed significant genetic variation both within and among accessions. The variation among the accessions accounted for 18.8% of the total variation (FST = 0.19; P < 0.001). Similarly, significant genetic variation was obtained among the geographic regions, accounting for 6.9% of the total variation (P < 0.001). The results of the cluster, principal coordinate, and population structure analyses suggest a poor correlation between the genetic makeups of finger millet landrace populations and their geographic regions of origin, which in turn suggests strong gene flow between populations within and across geographic regions. This study contributed novel EST-SSR markers for their various applications, and those that were monomorphic should be tested in more diverse finger millet genetic resources.
|
|
| 17. |
- Hammenhag, Cecilia, et al.
(författare)
-
QTL mapping for domestication-related characteristics in field cress (Lepidium campestre)—a novel oil crop for the Subarctic region
- 2020
-
Ingår i: Genes. - : MDPI AG. - 2073-4425. ; 11
-
Tidskriftsartikel (refereegranskat)abstract
- Domestication of a new crop requires identification and improvement of desirable characteristics Field cress (Lepidium campestre) is being domesticated as a new oilseed crop, particularly for northern temperate regions.. In the present study, an F-2 mapping population and its F-3 progenies were used to identify quantitative trait loci (QTLs) for plant height (PH), number of stems per plant (NS), stem growth orientation (SO), flowering habit (FH), earliness (ER), seed yield per plant (SY), pod shattering resistance (SHR), and perenniality (PE). A highly significant correlation (p < 0.001) was observed between several pairs of characteristics, including SY and ER (negative) or ER and PE (positive). The inclusive composite interval mapping approach was used for QTL mapping using 2330 single nucleotide polymorphism (SNP) markers mapped across the eight field cress linkage groups. Nine QTLs were identified with NS, PH, SO, and PE having 3, 3, 2, and 1 QTLs, explaining 21.3%, 29.5%, 3.8%, and 7.2% of the phenotypic variation, respectively. Candidate genes behind three of the QTLs and favorable marker alleles for different classes of each characteristic were identified. Following their validation through further study, the identified QTLs and associated favorable marker alleles can be used in marker-aided breeding to speed up the domestication of field cress.
|
|
| 18. |
- Jin, Yunkai, et al.
(författare)
-
New Energy Crops for Biofuel Production
- 2015
-
Ingår i: Handbook of clean energy systems. - Chichester, UK : John Wiley & Sons, Ltd. - 9781118388587 ; , s. 49-62
-
Bokkapitel (refereegranskat)
|
|
| 19. |
- Karlsson, Milla, et al.
(författare)
-
Möjliga tillämpningar av nya genomiska tekniker inom integrerat växtskydd
- 2023
-
Rapport (övrigt vetenskapligt/konstnärligt)abstract
- Det pågår en omställning av jord- och trädgårdsbruket, både med hänsyn till hållbar produktion och pågående klimatförändringar. Som en del av EUs arbete att utveckla lantbruket mot en mer hållbar produktion har kommissionen lagt fram ett förslag på minskning av växtskyddsmedel om minst 50 %, totalt sett inom EU, senast 2030. För Sveriges del innebär förslaget, enligt preliminära beräkningar, att vi behöver minska mängden växtskyddsmedel med 35-36 %. För att ersätta funktionen av denna mängd växtskyddsmedel behövs ett integrerat tillvägagångssätt som kräver tillgång till andra effektiva metoder för bekämpning av skadegörare på odlade växter.Under det senaste decenniet har nya genomiska tekniker inom växtförädlingen utvecklats, vilka möjliggör riktade förändringar i många grödors genom. Teknikerna innebär antingen att man introducerar enstaka förändringar i DNA-sekvensen (s.k. genomredigering), eller att man sätter in en längre DNA-sekvens från samma art eller en korsningsbar art i en gröda (s.k. cisgenes). Dessutom har kunskapen om växters försvarssystem framskridit avsevärt. Med den ökade kunskapen och de nya teknikerna ökar möjligheten att kombinera gener och öka variationen av de gener som gör grödorna resistenta mot olika växtsjukdomar. På så sätt kan förädlingen av sjukdomsresistenta sorter ske med betydligt bättre precision och på kortare tid än vad traditionella förädlingstekniker tillåter. Tidsaspekten kan ses som extra viktig i resistenssammanhang eftersom skadegörarpopulationerna ändras kontinuerligt. Potentialen att kombinera flera olika resistensmekanismer för att uppnå mer uthållig resistens samt möjligheten att lösa ett eller flera växtskyddsproblem i samma sort bör också noteras.Enligt nuvarande EU-lagstiftning regleras dock genomredigerade och cisgena grödor på samma sätt som traditionellt genetiskt modifierade organismer (GMO), en lagstiftning som i praktiken omöjliggör kommersiell odling inom EU. Detta trots att resultatet av de moderna teknikerna kan efterlikna vad som kan ske spontant i naturen (mutationer) eller via traditionella oreglerade förädlingsmetoder (t.ex. mutations-, eller korsningsförädling). I lagstiftningen tas det ej i beaktande att sjukdomsresistenta grödor kan bidra till en minskad användning av växtskyddsmedel.Idag är potatisodling ofta förknippad med en användning av stora mängder växtskyddsmedel mot potatisbladmögel. Samtidigt är det möjligt att göra potatissorterna helt resistenta mot potatisbladmögel med hjälp av cisgenes och ge dem en ökad motståndskraft med hjälp av genomredigering. Om det vore möjligt att odla potatis som förädlats med nya genomiska tekniker inom EU idag, visar denna rapport att det skulle vara möjligt att kraftigt minska användningen av växtskyddsmedel i potatisodlingen. Det skulle innebära en reducering av mängden växtskyddsmedel som används inom det svenska lantbruket och skulle även innebära besparingar runt 91 miljoner SEK per år för odlarna.Vete och annan spannmål är de grödor där flest totala hektardoser av fungicider appliceras, till en årlig kostnad av två miljarder SEK. För dessa grödor finns inget lika tydligt exempel på enskilda sjukdomar som så kraftigt kan minska fungicidanvändningen. Vi ser dock en tydlig framtida potential att minska antalet bekämpningar och därmed kostnaden för lantbruket med hjälp av nya genomiska tekniker inom sädesslagen.Möjligheten att öka växters egen resistens för att minska användningen av växtskyddsmedel finns redan idag även i flera andra grödor, och möjligheterna förväntas fortsatt växa i takt med att teknikutveckling och forskning fortgår. En förändrad lagstiftning runt nya genomiska tekniker skulle även öppna för applikationer inom områden där det idag inte finns någon effektiv metod att bekämpa växtskadegörare. Exempel på sådana skadegörare är många virussjukdomar och skador som orsakas av nematoder. Därför kan skördestabiliteten och konkurrenskraften förväntas öka i grödor där det idag finns skadegörare där effektiva bekämpningsmetoder saknas.Sammanfattningsvis ser vi nya genomiska tekniker för att förädla resistenta grödor som en viktig del i arbetet mot ett hållbart jordbruk och för att uppnå EU-kommissionens mål om att reducera användningen av växtskyddsmedel inom jord- och trädgårdsbruket.
|
|
| 20. |
- Lehrman, Anna, et al.
(författare)
-
Framtidens mat - om husdjursavel och växtförädling
- 2014
-
Bok (övrigt vetenskapligt/konstnärligt)abstract
- Du har kanske inte funderat över varför tomater ser ut som de gör, varför våra husdjur är så lugna och vänliga, eller hur det är möjligt att köpa en vattenmelon utan kärnor. Trots att växtförädling och djuravel har format det mesta vi äter, är det få människor som är medvetna om vilka vetenskapliga upptäckter och vilket omfattande arbete som ligger bakom maten vi lägger på våra tallrikar. Med den här boken vill vi ge en översikt över domesticeringens och förädlingens bakgrund, från jordbrukets början för mer än 10 000 år sedan till dagens molekylära arbete. Vi beskriver grunderna för genernas strukturer och funktioner, varför och hur olika avels- och förädlingsmetoder används och ger en inblick i lagstiftningen kring användning av genteknik i Sverige och EU. Vi ger också en överblick över olika produkter som tagits fram genom genetisk modifiering (GM) och en sammanfattning av de ekonomiska konsekvenserna av GM-grödor. Vidare diskuterar vi etiska frågor som rör avel och förädling i allmänhet och genetisk modifiering i synnerhet.
|
|
| 21. |
- Leonova, Svetlana
(författare)
-
Lipids in seeds of oat (Avena spp.), a potential oil crop : content, quality, metabolism, and possibilities for improvement
- 2013
-
Doktorsavhandling (övrigt vetenskapligt/konstnärligt)abstract
- New oil crops with high yield and oil content are urgently needed. Oat is the only cereal that accumulates substantial amount of lipids in the endosperm. This gives it potential as an oil crop, which could address both nutritional and environmental concerns of modern society. To develop oat with increased oil content, thorough investigations on its lipid metabolism and tools for genetic manipulations are needed. Analyses of lipids in seeds of wild and cultivated oat species revealed variation in wild oat accessions in both oil content and quality. This variation should allow for development of new oat varieties for diverse applications. However, to develop oat as an oil crop, a level of 20% of the seed dry weight as oil is required and the range of oil content in the studied accessions was 4-10%. Another feature which showed almost no deviation was the amount of omega 3 fatty acid, -linolenic acid (0.6-2.1%). To develop oat varieties with ultra-high seed oil and increased content of omega 3 fatty acids, a biotechnological approach is preferred to conventional breeding methods. Lipids in oat endosperm have been reported to exist, not enclosed in oil bodies, but as non-structured oil smear. In my study, I also observed oil smears, a phenomenon probably correlated with the reduced amount of oil body associated proteins in the endosperm, as revealed by microscopic and staining methods. This was supported experimentally by SDS-PAGE separation of oil-body proteins and immunoblotting and immunolocalization with antibodies against a 16 kD oil body protein. Biochemical studies on lipid mobilization during oat seed germination demonstrated efficient utilization of oil reserves from the starchy endosperm; these results were corroborated by microscopy. An oat cultivar which is capable of accumulating high amounts of oil in the endosperm was shown to be also efficient in utilizing these reserves upon germination. Agrobacterium-mediated transformation is one of the methods for modification of oat oil content and/or its quality. The results of the analyses aimed at development of an Agrobacterium-mediated oat transformation protocol are presented in this thesis.
|
|
| 22. |
- Mulugeta, Behailu, et al.
(författare)
-
Marker-trait association analyses revealed major novel QTLs for grain yield and related traits in durum wheat
- 2023
-
Ingår i: Frontiers in Plant Science. - : Frontiers Media SA. - 1664-462X. ; 13
-
Tidskriftsartikel (refereegranskat)abstract
- The growing global demand for wheat for food is rising due to the influence of population growth and climate change. The dissection of complex traits by employing a genome-wide association study (GWAS) allows the identification of DNA markers associated with complex traits to improve the productivity of crops. We used GWAS with 10,045 single nucleotide polymorphism (SNP) markers to search for genomic regions associated with grain yield and related traits based on diverse panels of Ethiopian durum wheat. In Ethiopia, multi-environment trials of the genotypes were carried out at five locations. The genotyping was conducted using the 25k Illumina Wheat SNP array to explore population structure, linkage disequilibrium (LD), and marker-trait associations (MTAs). For GWAS, the multi-locus Fixed and Random Model Circulating Probability Unification (FarmCPU) model was applied. Broad-sense heritability estimates were high, ranging from 0.63 (for grain yield) to 0.97 (for thousand-kernel weight). The population structure based on principal component analysis, and model-based cluster analysis revealed two genetically distinct clusters with limited admixtures. The LD among SNPs declined within the range of 2.02-10.04 Mbp with an average of 4.28 Mbp. The GWAS scan based on the mean performance of the genotypes across the environments identified 44 significant MTAs across the chromosomes. Twenty-six of these MTAs are novel, whereas the remaining 18 were previously reported and confirmed in this study. We also identified candidate genes for the novel loci potentially regulating the traits. Hence, this study highlights the significance of the Ethiopian durum wheat gene pool for improving durum wheat globally. Furthermore, a breeding strategy focusing on accumulating favorable alleles at these loci could improve durum wheat production in the East African highlands and elsewhere.
|
|
| 23. |
- Nemesio Gorriz, Miguel
(författare)
-
Molecular responses against Heterobasidion annosum s.l. in Picea abies
- 2015
-
Doktorsavhandling (övrigt vetenskapligt/konstnärligt)abstract
- Norway spruce [Picea abies (L.) Karst.] is a main tree species in European forests and is important both ecologically and economically. The root rot fungus Heterobasidion annosum sensu lato (s.l.) is the main P. abies pathogen. Including resistance in breeding programs would help mitigating the impact of the pathogen but knowledge regarding defense mechanisms in P. abies needs a better understanding. The work within this thesis intended to expand the existing knowledge on P. abies resistance mechanisms focusing on hormone signaling, flavonoid biosynthesis and its transcriptional regulation. I found that jasmonic acid is the major hormone controlling defense signaling pathways in P. abies. Furthermore, we validated a candidate gene, PaLAR3, as a resistance marker for H. annosum s.l. in P. abies. PaLAR3 encodes an enzyme responsible for the synthesis of (+) catechin, which showed a fungistatic effect on H. parviporum. Analysis of genetic diversity revealed two allelic lineages of PaLAR3 that showed significant differences in fungal resistance and (+) catechin content that were explained by dissimilarities in inducibility. We studied the role of PaNAC03, a transcription factor that is associated with H. annosum s.l. infection. PaNAC03 not only showed repression of multiple genes including PaLAR3, but bound only to the promoter of one of the PaLAR3 allelic lineages explaining at least partly the differences in allelic expression that were observed. Finally, we identified a full repertoire of members of a MYB/bHLH/WDR transcription factor complex in Norway spruce, which showed differences in protein interactions and expression patterns, and also in ability to control the expression of genes in the flavonoid biosynthetic pathway including PaLAR3.
|
|
| 24. |
- Ortiz Rios, Rodomiro Octavio
(författare)
-
Advances in Host Plant and Rhizobium Genomics to Enhance Symbiotic Nitrogen Fixation in Grain Legumes
- 2015
-
Ingår i: Advances in Agronomy. - : Elsevier. - 0065-2113 .- 2213-6789. ; 129, s. 1-116
-
Forskningsöversikt (refereegranskat)abstract
- Legumes form symbiotic relationship with root-nodule, rhizobia. The nitrogen (N2) fixed by legumes is a renewable source and of great importance to agriculture. Symbiotic nitrogen fixation (SNF) is constrained by multiple stresses and alleviating them would improve SNF contribution to agroecosystems. Genetic differences in adaptation tolerance to various stresses are known in both host plant and rhizobium. The discovery and use of promiscuous germplasm in soybean led to the release of high-yielding cultivars in Africa. High N2-fixing soybean cultivars are commercially grown in Australia and some countries in Africa and South America and those of pea in Russia. SNF is a complex trait, governed by multigenes with varying effects. Few major quantitative trait loci (QTL) and candidate genes underlying QTL are reported in grain and model legumes. Nodulating genes in model legumes are cloned and orthologs determined in grain legumes. Single nucleotide polymorphism (SNP) markers from nodulation genes are available in common bean and soybean. Genomes of chickpea, pigeonpea, and soybean; and genomes of several rhizobium species are decoded. Expression studies revealed few genes associated with SNF in model and grain legumes. Advances in host plant and rhizobium genomics are helping identify DNA markers to aid breeding of legume cultivars with high symbiotic efficiency. A paradigm shift is needed by breeding programs to simultaneously improve host plant and rhizobium to harness the strength of positive symbiotic interactions in cultivar development. Computation models based on metabolic reconstruction pathways are providing greater insights to explore genotype–phenotype relationships in SNF. Models to simulate the response of N2 fixation to a range of environmental variables and crop growth are assisting researchers to quantify SNF for efficient and sustainable agricultural production systems. Such knowledge helps identifying bottlenecks in specific legume–rhizobia systems that could be overcome by legume breeding to enhance SNF. This review discusses the recent developments to improve SNF and productivity of grain legumes.
|
|
| 25. |
- Ortiz Rios, Rodomiro Octavio
(författare)
-
Application of genomics assisted breeding for generation of climate resilient crops: progress and prospects
- 2015
-
Ingår i: Frontiers in Plant Science. - : Frontiers Media SA. - 1664-462X. ; 6
-
Tidskriftsartikel (refereegranskat)abstract
- Climate change affects agricultural productivity worldwide. Increased prices of food commodities are the initial indication of drastic edible yield loss, which is expected to increase further due to global warming. This situation has compelled plant scientists to develop climate change-resilient crops,which can withstand broad-spectrums tresses such as drought, heat, cold, salinity, flood, submergence and pests, thus helping to deliver increased productivity. Genomics appears to be a promising tool for deciphering the stress responsiveness of crop species with adaptation traits or in wild relatives toward identifying underlying genes, alleles or quantitative trait loci. Molecular breeding approaches have proven helpful in enhancing the stress adaptation of crop plants, and recent advances in high-throughput sequencing and phenotyping platforms have transformed molecula rbreeding to genomics-assisted breeding (GAB). In view of this, the present review elaborates the progress and prospects of GAB for improving climate change resilience in crops, which is likely to play an ever increasing role in the effort to ensure global food security.
|
|
