| 1. |
- Nilsson, R. Henrik, 1976, et al.
(author)
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Mycobiome diversity: high-throughput sequencing and identification of fungi.
- 2019
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In: Nature reviews. Microbiology. - : Springer Science and Business Media LLC. - 1740-1534 .- 1740-1526. ; 17, s. 95-109
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Research review (peer-reviewed)abstract
- Fungi are major ecological players in both terrestrial and aquatic environments by cycling organic matter and channelling nutrients across trophic levels. High-throughput sequencing (HTS) studies of fungal communities are redrawing the map of the fungal kingdom by hinting at its enormous - and largely uncharted - taxonomic and functional diversity. However, HTS approaches come with a range of pitfalls and potential biases, cautioning against unwary application and interpretation of HTS technologies and results. In this Review, we provide an overview and practical recommendations for aspects of HTS studies ranging from sampling and laboratory practices to data processing and analysis. We also discuss upcoming trends and techniques in the field and summarize recent and noteworthy results from HTS studies targeting fungal communities and guilds. Our Review highlights the need for reproducibility and public data availability in the study of fungal communities. If the associated challenges and conceptual barriers are overcome, HTS offers immense possibilities in mycology and elsewhere.
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| 2. |
- Johnsson, Anna-Ida, et al.
(author)
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Specific SCAR markers and multiplex real-time PCR for quantification of two Trichoderma biocontrol strains in environmental samples
- 2011
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In: BioControl. - : Springer Science and Business Media LLC. - 1386-6141 .- 1573-8248. ; 56, s. 903-913
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Journal article (peer-reviewed)abstract
- Several strains from the genus Trichoderma (Ascomycetes, Hypocreales) are commercially used as biocontrol agents, e.g. in formulations containing the two Trichoderma strains IMI206039 (Hypocrea parapilulifera B.S. Lu, Druzhinina & Samuels) and IMI206040 (T. atroviride P. Karst). To quantify the presence of the two isolates after application, we developed primers for SCAR markers (Sequence-Characterised Amplified Region). In order to quantify both fungal strains simultaneously, we also designed fluorophore-labelled probes distinguishing the two strains, to be used in combination with the SCAR primers. In incubations of two different soils, artificially inoculated and maintained under controlled conditions, the quantification through amplification with the SCAR markers in qPCR and through colony-forming units from plate counting correlated well. Further tests of the markers on samples taken from a golf green treated with a product containing both strains indicated that the two biocontrol strains did not establish, either on the golf green or in the surrounding area.
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| 3. |
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| 4. |
- Von Rosen, Dietrich
(author)
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Non-negative estimation of variance components in heteroscedastic one-way random-effects ANOVA models
- 2010
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In: Statistics. - : Informa UK Limited. - 0233-1888 .- 1029-4910. ; 44, s. 557-569
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Journal article (peer-reviewed)abstract
- There is a considerable amount of literature dealing with inference about the parameters in a heteroscedastic one-way random-effects ANOVA model. In this paper, we primarily address the problem of improved quadratic estimation of the random-effect variance component. It turns out that such estimators with a smaller mean squared error compared with some standard unbiased quadratic estimators exist under quite general conditions. Improved estimators of the error variance components are also established.
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| 5. |
- Sanli, Kemal, et al.
(author)
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Metagenomic Sequencing of Marine Periphyton: Taxonomic and Functional Insights into Biofilm Communities
- 2015
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In: Frontiers in Microbiology. - : Frontiers Media SA. - 1664-302X. ; 6:1192
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Journal article (peer-reviewed)abstract
- Periphyton communities are complex phototrophic, multispecies biofilms that develop on surfaces in aquatic environments. These communities harbor a large diversity of organisms comprising viruses, bacteria, algae, fungi, protozoans and metazoans. However, thus far the total biodiversity of periphyton has not been described. In this study, we use metagenomics to characterize periphyton communities from the marine environment of the Swedish west coast. Although we found approximately ten times more eukaryotic rRNA marker gene sequences compared to prokaryotic, the whole metagenome-based similarity searches showed that bacteria constitute the most abundant phyla in these biofilms. We show that marine periphyton encompass a range of heterotrophic and phototrophic organisms. Heterotrophic bacteria, including the majority of proteobacterial clades and Bacteroidetes, and eukaryotic macro-invertebrates were found to dominate periphyton. The phototrophic groups comprise Cyanobacteria and the alpha-proteobacterial genus Roseobacter, followed by different micro- and macro-algae. We also assess the metabolic pathways that predispose these communities to an attached lifestyle. Functional indicators of the biofilm form of life in periphyton involve genes coding for enzymes that catalyze the production and degradation of extracellular polymeric substances, mainly in the form of complex sugars such as starch and glycogen-like meshes together with chitin. Genes for 278 different transporter proteins were detected in the metagenome, constituting the most abundant protein complexes. Finally, genes encoding enzymes that participate in anaerobic pathways, such as denitrification and methanogenesis, were detected suggesting the presence of anaerobic or low-oxygen micro-zones within the biofilms.
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| 6. |
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Unraveling the logics of landscape
- 2014
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Editorial collection (other academic/artistic)abstract
- Despite conceptual oscillations through times, the concept of landscape remains highly subjective, whereupon unraveling its 'logics' opens up to a plurality of interpretations. Accordingly, by focusing on the interconnections present in the non-haphazard production of landscape, this publication elaborates on how the rural landscape is valued, monitored, changed, harbored, used and misused, be it through actions, representations or metaphors. This book covers a broad range of topics, with contributions from scholars from more than 30 countries.
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| 7. |
- Röös, Elin, et al.
(author)
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Diagnostic, regenerative or fossil-free - exploring stakeholder perceptions of Swedish food system sustainability
- 2023
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In: Ecological Economics. - : Elsevier B.V.. - 0921-8009 .- 1873-6106. ; 203
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Journal article (peer-reviewed)abstract
- In an analysis of food system sustainability challenges and solutions among Swedish food system actors using Q-methodology, five perspectives were identified. One of the main three perspectives placed the highest priority on reduced meat consumption, food waste, and climate impact in agriculture, but downplayed strategies highlighted in the national food strategy and social aspects, and can be interpreted as a diagnostic climate mitigation-oriented perspective that does not reflect current negotiated policy processes or ‘softer’ values of food. In an alternative regenerative perspective, industrialized large-scale farming and lack of internalization of external costs were regarded as the main problems, and diversity, soil health, and organic farming as the main solutions. Proponents of a third perspective regarded phasing out fossil fuels, increased profitability of companies, increased meat production, and self-sufficiency as high priorities. These contrasting views can be a major barrier to transforming the Swedish food system. However, a number of entry points for change (i.e. aspects highly important for some and neutral for others) were identified, including focusing on healthy diets and increased production of fruit and vegetables. Focusing on these can build trust among stakeholders before moving to discussions about the larger and more sensitive systemic changes needed. © 2022 The Authors
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| 8. |
- Jayasiri, Subashini C., et al.
(author)
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The Faces of Fungi database: fungal names linked with morphology, phylogeny and human impacts
- 2015
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In: Fungal diversity. - : Springer Science and Business Media LLC. - 1560-2745 .- 1878-9129. ; 74:1, s. 3-18
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Journal article (peer-reviewed)abstract
- Taxonomic names are key links between various databases that store information on different organisms. Several global fungal nomenclural and taxonomic databases (notably Index Fungorum, Species Fungorum and MycoBank) can be sourced to find taxonomic details about fungi, while DNA sequence data can be sourced from NCBI, EBI and UNITE databases. Although the sequence data may be linked to a name, the quality of the metadata is variable and generally there is no corresponding link to images, descriptions or herbarium material. There is generally no way to establish the accuracy of the names in these genomic databases, other than whether the submission is from a reputable source. To tackle this problem, a new database (FacesofFungi), accessible at www.facesoffungi.org (FoF) has been established. This fungal database allows deposition of taxonomic data, phenotypic details and other useful data, which will enhance our current taxonomic understanding and ultimately enable mycologists to gain better and updated insights into the current fungal classification system. In addition, the database will also allow access to comprehensive metadata including descriptions of voucher and type specimens. This database is user-friendly, providing links and easy access between taxonomic ranks, with the classification system based primarily on molecular data (from the literature and via updated web-based phylogenetic trees), and to a lesser extent on morphological data when molecular data are unavailable. In FoF species are not only linked to the closest phylogenetic representatives, but also relevant data is provided, wherever available, on various applied aspects, such as ecological, industrial, quarantine and chemical uses. The data include the three main fungal groups (Ascomycota, Basidiomycota, Basal fungi) and fungus-like organisms. The FoF webpage is an output funded by the Mushroom Research Foundation which is an NGO with seven directors with mycological expertise. The webpage has 76 curators, and with the help of these specialists, FoF will provide an updated natural classification of the fungi, with illustrated accounts of species linked to molecular data. The present paper introduces the FoF database to the scientific community and briefly reviews some of the problems associated with classification and identification of the main fungal groups. The structure and use of the database is then explained. We would like to invite all mycologists to contribute to these web pages.
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| 9. |
- Kõljalg, Urmas, et al.
(author)
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A price tag on species
- 2022
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In: Research Ideas and Outcomes_RIO. - : Pensoft Publishers. - 2367-7163. ; 8, s. 1-7
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Journal article (peer-reviewed)abstract
- Species have intrinsic value but also partake in a long range of ecosystem services of major economic value to humans. These values have proved hard to quantify precisely, making it all too easy to dismiss them altogether. We outline the concept of the species stock market (SSM), a system to provide a unified basis for valuation of all living species. The SSM amalgamates digitized information from natural history collections, occurrence data, and molecular sequence databases to quantify our knowledge of each species from scientific, societal, and economic points of view. The conceptual trading system will necessarily be very unlike that of the regular stock market, but the looming biodiversity crisis implores us to finally put an open and transparent price tag on symbiosis, deforestation, and pollution
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| 10. |
- Tedersoo, Leho, et al.
(author)
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Novel soil-inhabiting clades fill gaps in the fungal tree of life
- 2017
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In: Microbiome. - : Springer Science and Business Media LLC. - 2049-2618. ; 5
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Journal article (peer-reviewed)abstract
- Background - Fungi are a diverse eukaryotic group of degraders, pathogens, and symbionts, with many lineages known only from DNA sequences in soil, sediments, air, and water. Results - We provide rough phylogenetic placement and principal niche analysis for >40 previously unrecognized fungal groups at the order and class level from global soil samples based on combined 18S (nSSU) and 28S (nLSU) rRNA gene sequences. Especially, Rozellomycota (Cryptomycota), Zygomycota s.lat, Ascomycota, and Basidiomycota are rich in novel fungal lineages, most of which exhibit distinct preferences for climate and soil pH. Conclusions - This study uncovers the great phylogenetic richness of previously unrecognized order- to phylum-level fungal lineages. Most of these rare groups are distributed in different ecosystems of the world but exhibit distinct ecological preferences for climate or soil pH. Across the fungal kingdom, tropical and non-tropical habitats are equally likely to harbor novel groups. We advocate that a combination of traditional and high-throughput sequencing methods enable efficient recovery and phylogenetic placement of such unknown taxonomic groups.
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| 11. |
- Abarenkov, Kessy, et al.
(author)
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Protax-fungi: A web-based tool for probabilistic taxonomic placement of fungal internal transcribed spacer sequences
- 2018
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In: New Phytologist. - : Wiley. - 0028-646X .- 1469-8137. ; 220:2, s. 517-525
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Journal article (peer-reviewed)abstract
- © 2018 New Phytologist Trust. Incompleteness of reference sequence databases and unresolved taxonomic relationships complicates taxonomic placement of fungal sequences. We developed Protax-fungi, a general tool for taxonomic placement of fungal internal transcribed spacer (ITS) sequences, and implemented it into the PlutoF platform of the UNITE database for molecular identification of fungi. With empirical data on root- and wood-associated fungi, Protax-fungi reliably identified (with at least 90% identification probability) the majority of sequences to the order level but only around one-fifth of them to the species level, reflecting the current limited coverage of the databases. Protax-fungi outperformed the Sintax and Rdb classifiers in terms of increased accuracy and decreased calibration error when applied to data on mock communities representing species groups with poor sequence database coverage. We applied Protax-fungi to examine the internal consistencies of the Index Fungorum and UNITE databases. This revealed inconsistencies in the taxonomy database as well as mislabelling and sequence quality problems in the reference database. The according improvements were implemented in both databases. Protax-fungi provides a robust tool for performing statistically reliable identifications of fungi in spite of the incompleteness of extant reference sequence databases and unresolved taxonomic relationships.
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| 12. |
- Pendrill, Florence, 1983
(author)
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Felling Forests from Afar: Quantifying Deforestation Driven by Agricultural Expansion and International Trade
- 2019
-
Licentiate thesis (other academic/artistic)abstract
- Deforestation is a major source of human-caused greenhouse gas emissions and the largest threat to terrestrial biodiversity. Most forest loss is due to the expansion of agricultural land use increasingly driven by international demand for food, fuel and fibre. However, there is still limited understanding of the extent to which different agricultural commodities are contributing to deforestation. It has therefore also been difficult to evaluate the role of international trade in driving deforestation. This dissertation aims at quantifying the agricultural drivers of tropical deforestation (Papers I and II) and the associated carbon emissions (Paper III). It further assesses the role of international trade, by following the agricultural commodities with embodied deforestation through international supply chains using trade models (Papers II and III). The results show that a few commodity types, primarily cattle meat and oilseed products, account for a large part of tropical deforestation. Much (26–39%) of the embodied deforestation and concomitant emissions were found to be associated with international demand (from products and services). Looking closer at the countries that import embodied deforestation, Paper II finds that many countries that are increasing their forest cover at home, import products associated with deforestation elsewhere, thereby offsetting about a third of their forest gains. Paper III finds that imports of embodied deforestation emissions for many developed countries are similar in size to their national agricultural emissions amounting, e.g., for the EU, to around 15% of the carbon footprint of an average diet. Put together, the results add to the evidence that combating deforestation can benefit from complementing domestic policies with measures that target international demand. The results also indicate that tackling deforestation and its associated impacts at the global level is probably even more challenging than at the national level, although international trade can also provide efficiency gains by optimising land use globally.
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| 13. |
- Ahrné, Karin, et al.
(author)
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Tillstånd och trender för arter och deras livsmiljöer – rödlistade arter i Sverige 2015
- 2015
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Reports (other academic/artistic)abstract
- 2015 års upplaga av den svenska rödlistan är den fjärde i ordningen. Den är baserad på IUCN:s rödlistningskriterier och revideras vart femte år. I rödlistan bedöms risken som enskilda arter av djur, växter och svampar löper att försvinna från Sverige. Bedömningen utförs av ArtDatabankens medarbetare i samverkan med över 100 externa experter, indelade i 14 expertkommittéer för olika organismgrupper. Under arbetet med 2015 års rödlista har tillstånd och trender bedömts för 21 600 arter och 1 318 lägre taxa (apomiktiska arter, underarter och varieteter), sammanlagt ca 22 900 taxa. Av de bedömda arterna klassificerades 2 029 som hotade (kategorierna CR, EN och VU) och 4 273 som rödlistade (inkluderar även kategorierna NT, RE och DD). Förhållandet mellan antalet rödlistade och antalet bedömda arter ar 19,8 %, vilket är ungefär samma värde som 2010 och 2005. I denna rapport jämförs antalet och andelen rödlistade arter mellan olika organismgrupper, biotoper, substrat och påverkansfaktorer. Texten ar indelad i en allmän del och åtta kapitel inriktade på olika landskapstyper. Landskapstyperna utgör en grov indelning av landets miljöer enligt följande kategorier: Skog, Jordbrukslandskap, Urbana miljöer, Fjäll, Våtmarker, Sötvatten, Havsstränder och Havsmiljöer. Skogen och jordbrukslandskapet är de artrikaste landskapstyperna med 1 800 respektive 1 400 arter som har en stark anknytning dit, och ytterligare flera hundra arter som förekommer där mer sporadiskt. De faktorer som påverkar flest rödlistade arter i Sverige är skogsavverkning och igenväxning, som båda utgör ett hot mot vardera ca 30 % av de rödlistade arterna. Avverkning minskar arealen av skog där naturliga strukturer och naturlig dynamik upprätthålls, och den orsakar därmed förlust av livsmiljöer. Igenväxning orsakas av ett antal faktorer, bland annat upphörande hävd (bete och slåtter), gödsling, trädplantering och brist på naturliga störningsregimer som t.ex. regelbundna översvämningar kring vattendrag och sjöar. Andra viktiga påverkansfaktorer är fiske, torrläggning av våtmarker, tillbakagång hos värdarter (främst alm och ask som drabbats av invasiva svampsjukdomar), klimatförändringar och konkurrens från invasiva arter. IUCN:s rödlisteindex beräknas för ett urval av de bedömda organismgrupperna. Rödlisteindex visar att skillnaderna mellan rödlistorna från 2000, 2005, 2010 och 2015 är små. Ett par undantag finns dock. Groddjur och stora däggdjur har fått en något förbättrad situation sedan 2000. Totalt förefaller det ändå som att trycket mot Sveriges artstock har förblivit relativt konstant under de senaste 15 åren.
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| 14. |
- Liljenström, Hans, et al.
(author)
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Scoping Report on Socio-Economic and Land Use Dynamics in the Stockholm-Mälar Region
- 2014
-
Reports (other academic/artistic)abstract
- This scoping report for the COMPLEX work package 4 (WP4) on Socio-Economic and Land Use Dynamics in the Stockholm-Mälar Region has several objectives. The first is to present and outline the state-of-the-art, including a literature review, with regard to complex pathways to a low carbon society, with special relevance to the Stockholm-Mälar region. It will do so in a larger context of complex socio-natural systems, with an emphasis on a green economy, bioen-ergy and land use, as well as on societal transformation and behavioural change. Another objec-tive is to inform primarily our partners in COMPLEX, but also others who might be interested, including stakeholders in our study region. Perhaps the most important objective with this re-port is to provide a basis for the collaborative work within our work package, and with our col-leagues elsewhere. In this second revised version of the report, we have extended some parts, and shortened others, depending on suggestions and interesting new information. A part of this new information has come from a stakeholder workshop held in Sigtuna in early 2014, which to a great extent could contribute to a more elaborate analysis of stakeholder and policy maker positions. In addition, there is now a more extensive description of relevant land use modelling. The illustrations included in this report are extracted from scientific articles and other material that we are referring to. Their origin is explicitly cited but no copyright authorization has been requested, while this report is intended primarily for internal spread and use within the COM-PLEX consortium and its networks.
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| 15. |
- Skovsgaard, Jens Peter
(author)
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Bog om tarmvridrøn
- 2013
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In: Skoven. - 0106-8539. ; 45, s. 551-551
-
Other publication (other academic/artistic)abstract
- Book review N. Mayer & R.T. Klumpp (ed.) 2013: Elsbeere in Österreich – Monographie. Verein zur Erhaltung, Pflege und Vermarktung der Elsbeere - Genussregion Wiesenwienerwald Elsbeere, Michelbach.
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| 16. |
- Ritter, Camila, et al.
(author)
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Biodiversity assessments in the 21st century: The potential of insect traps to complement environmental samples for estimating eukaryotic and prokaryotic diversity using high-throughput DNA metabarcoding.
- 2019
-
In: Genome. - : Canadian Science Publishing. - 1480-3321 .- 0831-2796. ; 62:3, s. 147-159
-
Journal article (peer-reviewed)abstract
- The rapid loss of biodiversity, coupled with difficulties in species identification, call for innovative approaches to assess biodiversity. Insects make up a substantial proportion of extant diversity and play fundamental roles in any given ecosystem. To complement morphological species identification, new techniques such as metabarcoding make it possible to quantify insect diversity and insect-ecosystem interactions through DNA sequencing. Here we examine the potential of bulk insect samples (i.e., containing many non-sorted specimens) to assess prokaryote and eukaryote biodiversity and to complement the taxonomic coverage of soil samples. We sampled 25 sites on three continents and in various ecosystems, collecting insects with Slam-traps (Brazil) and Malaise-traps (South Africa and Sweden). We then compared our diversity estimates with the results obtained with biodiversity data from soil samples from the same localities. We found a largely different taxonomic composition between the soil and insect samples, testifying to the potential of bulk insect samples to complement soil samples. Finally, we found that non-destructive DNA extraction protocols, which preserve insect specimens for morphological studies, constitute a promising choice for cost-effective biodiversity assessments. We propose that the sampling and sequencing of insect samples should become a standard complement for biodiversity studies based on environmental DNA.
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| 17. |
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| 18. |
- Crous, P. W., et al.
(author)
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Fusarium : more than a node or a foot-shaped basal cell
- 2021
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In: Studies in mycology. - : CENTRAALBUREAU SCHIMMELCULTURE. - 0166-0616 .- 1872-9797. ; :98
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Journal article (peer-reviewed)abstract
- Recent publications have argued that there are potentially serious consequences for researchers in recognising distinct genera in the terminal fusarioid clade of the family Nectriaceae. Thus, an alternate hypothesis, namely a very broad concept of the genus Fusarium was proposed. In doing so, however, a significant body of data that supports distinct genera in Nectriaceae based on morphology, biology, and phylogeny is disregarded. A DNA phylogeny based on 19 orthologous protein-coding genes was presented to support a very broad concept of Fusarium at the F1 node in Nectriaceae. Here, we demonstrate that re-analyses of this dataset show that all 19 genes support the F3 node that represents Fusarium sensu stricto as defined by F. sambucinum (sexual morph synonym Gibberella pulicaris). The backbone of the phylogeny is resolved by the concatenated alignment, but only six of the 19 genes fully support the F1 node, representing the broad circumscription of Fusarium. Furthermore, a re-analysis of the concatenated dataset revealed alternate topologies in different phylogenetic algorithms, highlighting the deep divergence and unresolved placement of various Nectriaceae lineages proposed as members of Fusarium. Species of Fusarium s. str. are characterised by Gibberella sexual morphs, asexual morphs with thin- or thick-walled macroconidia that have variously shaped apical and basal cells, and trichothecene mycotoxin production, which separates them from other fusarioid genera. Here we show that the Wollenweber concept of Fusarium presently accounts for 20 segregate genera with clear-cut synapomorphic traits, and that fusarioid macroconidia represent a character that has been gained or lost multiple times throughout Nectriaceae. Thus, the very broad circumscription of Fusarium is blurry and without apparent synapomorphies, and does not include all genera with fusarium-like macroconidia, which are spread throughout Nectriaceae (e.g., Cosmosporella, Macroconia, Microcera). In this study four new genera are introduced, along with 18 new species and 16 new combinations. These names convey information about relationships, morphology, and ecological preference that would otherwise be lost in a broader definition of Fusarium. To assist users to correctly identify fusarioid genera and species, we introduce a new online identification database, Fusarioid-ID, accessible at www.fusarium.org. The database comprises partial sequences from multiple genes commonly used to identify fusarioid taxa (act1, CaM, his3, rpb1, rpb2, tef1, tub2, ITS, and LSU). In this paper, we also present a nomenclator of names that have been introduced in Fusarium up to January 2021 as well as their current status, types, and diagnostic DNA barcode data. In this study, researchers from 46 countries, representing taxonomists, plant pathologists, medical mycologists, quarantine officials, regulatory agencies, and students, strongly support the application and use of a more precisely delimited Fusarium (= Gibberella) concept to accommodate taxa from the robust monophyletic node F3 on the basis of a well-defined and unique combination of morphological and biochemical features. This F3 node includes, among others, species of the F. fujikuroi, F. incarnatum-equiseti, F. oxysporum, and F. sambucinum species complexes, but not species of Bisifusarium [F. dimerum species complex (SC)], Cyanonectria (F. buxicola SC), Geejayessia (F. staphyleae SC), Neocosmospora (F. solani SC) or Rectifusarium (F. ventricosum SC). The present study represents the first step to generating a new online monograph of Fusarium and allied fusarioid genera (www.fusarium.org).
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| 19. |
- Hartmann, Martin, et al.
(author)
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Significant and persistent impact of timber harvesting on soil microbial communities in Northern coniferous forests
- 2012
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In: The ISME Journal. - : Springer Science and Business Media LLC. - 1751-7362 .- 1751-7370. ; 6:12, s. 2199-2218
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Journal article (peer-reviewed)abstract
- Forest ecosystems have integral roles in climate stability, biodiversity and economic development. Soil stewardship is essential for sustainable forest management. Organic matter (OM) removal and soil compaction are key disturbances associated with forest harvesting, but their impacts on forest ecosystems are not well understood. Because microbiological processes regulate soil ecology and biogeochemistry, microbial community structure might serve as indicator of forest ecosystem status, revealing changes in nutrient and energy flow patterns before they have irreversible effects on long-term soil productivity. We applied massively parallel pyrosequencing of over 4.6 million ribosomal marker sequences to assess the impact of OM removal and soil compaction on bacterial and fungal communities in a field experiment replicated at six forest sites in British Columbia, Canada. More than a decade after harvesting, diversity and structure of soil bacterial and fungal communities remained significantly altered by harvesting disturbances, with individual taxonomic groups responding differentially to varied levels of the disturbances. Plant symbionts, like ectomycorrhizal fungi, and saprobic taxa, such as ascomycetes and actinomycetes, were among the most sensitive to harvesting disturbances. Given their significant ecological roles in forest development, the fate of these taxa might be critical for sustainability of forest ecosystems. Although abundant bacterial populations were ubiquitous, abundant fungal populations often revealed a patchy distribution, consistent with their higher sensitivity to the examined soil disturbances. These results establish a comprehensive inventory of bacterial and fungal community composition in northern coniferous forests and demonstrate the long-term response of their structure to key disturbances associated with forest harvesting.
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| 20. |
- Nilsson, R. Henrik, 1976, et al.
(author)
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Improving ITS sequence data for identification of plant pathogenic fungi
- 2014
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In: Fungal Diversity. - : Springer Science and Business Media LLC. - 1560-2745 .- 1878-9129. ; 67:1, s. 11-19
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Journal article (peer-reviewed)abstract
- Plant pathogenic fungi are a large and diverse assemblage of eukaryotes with substantial impacts on natural ecosystems and human endeavours. These taxa often have complex and poorly understood life cycles, lack observable, discriminatory morphological characters, and may not be amenable to in vitro culturing. As a result, species identification is frequently difficult. Molecular (DNA sequence) data have emerged as crucial information for the taxonomic identification of plant pathogenic fungi, with the nuclear ribosomal internal transcribed spacer (ITS) region being the most popular marker. However, international nucleotide sequence databases are accumulating numerous sequences of compromised or low-resolution taxonomic annotations and substandard technical quality, making their use in the molecular identification of plant pathogenic fungi problematic. Here we report on a concerted effort to identify high-quality reference sequences for various plant pathogenic fungi and to re-annotate incorrectly or insufficiently annotated public ITS sequences from these fungal lineages. A third objective was to enrich the sequences with geographical and ecological metadata. The results – a total of 31,954 changes – are incorporated in and made available through the UNITE database for molecular identification of fungi (http://unite.ut.ee), including standalone FASTA files of sequence data for local BLAST searches, use in the next-generation sequencing analysis platforms QIIME and mothur, and related applications. The present initiative is just a beginning to cover the wide spectrum of plant pathogenic fungi, and we invite all researchers with pertinent expertise to join the annotation effort.
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| 21. |
- Nilsson, R. Henrik, 1976
(author)
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Unifying fungi
- 2015
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In: Science & Technology. - 2049-2391 .- 2049-2405. ; :14, s. 204-206
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Journal article (other academic/artistic)
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| 22. |
- Moore, Jason W., 1971-
(author)
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Environmental crises and the metabolic rift in world-historical perspective
- 2000
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In: Organization & environment. - 1086-0266 .- 1552-7417. ; 13:2, s. 123-157
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Journal article (peer-reviewed)abstract
- This article proposes a new theoretical framework to study the dialectic of capital and nature over the longue durée of world capitalism. The author proposes that today’s global ecological crisis has its roots in the transition to capitalism during the long sixteenth century. The emergence of capitalism marked not only a decisive shift in the arenas of politics, economy, and society, but a fundamental reorganization of world ecology, characterized by a “metabolic rift,” a progressively deepening rupture in the nutrient cycling between the country and the city. Building upon the historical political economy of Marx, Foster, Arrighi, and Wallerstein, the author proposes a new research agenda organized around the concept of systemic cycles of agro-ecological transformation. This agenda aims at discerning the ways in which capitalism’s relationship to nature developed discontinuously over time as recurrent ecological crises have formed a decisive moment of world capitalist crisis, forcing successive waves of restructuring over long historical time.
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| 23. |
- Mattsson, Eskil, 1981, et al.
(author)
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Quantification of carbon stock and tree diversity of homegardens in a dry zone area of Moneragala District, Sri Lanka
- 2015
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In: Agroforestry Systems. - : Springer Science and Business Media LLC. - 1572-9680 .- 0167-4366. ; 89:3, s. 435-445
-
Journal article (peer-reviewed)abstract
- Homegarden agroforestry systems are suggested to hold a large potential for climate change mitigation and adaptation. This is due to their multifunctional role in providing income, food and ecosystem services while decreasing pressure on natural forests and hence saving and storing carbon. In this paper, above-ground biomass carbon and tree species diversity of trees was quantified in homegardens around two villages in the dry south-eastern part of Moneragala district of Sri Lanka. A total of 45 dry zone homegardens were sampled on size, diameter at breast height, tree height and species diversity. Using allometric equations, we find a mean above-ground biomass stock of 13 mega grams of carbon per hectare (Mg C ha−1) with a large range among homegardens (1–56 Mg C ha−1, n = 45) due to a variation of tree diversity and composition between individual homegardens. Mean above-ground carbon stock per unit area was higher in small homegardens (0.2 ha, 26 Mg C ha−1, n = 11) and statistically different compared to medium (0.4–0.8 ha, 9 Mg C ha−1, n = 27) and large (1.0–1.2 ha, 8 Mg C ha−1, n = 7) homegardens. In total, 4,278 trees were sampled and 70 tree species identified and recorded. The Shannon Wiener index were used to evaluate diversity per homegarden and ranged from 0.76 to 3.01 with a mean value of 2.05 ± 0.07 indicating a medium evenly distributed diversity of sampled tree species. The results show a vast heterogeneity in terms of carbon stock and tree diversity within the less studied dry zone homegardens; results that contribute to more knowledge of their expansion potential as well as climate mitigation and adaptation potential. The results are also useful for whether homegardens should be considered to be included as an activity to enhance natural forest cover within Sri Lanka’s newly commenced UN-REDD National Programme.
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| 24. |
-
Bulletin of Geography. Socio-Economic Series (Volume 40)
- 2018
-
In: Bulletin of Geography. Socio-Economic Series (De Gruyter). - 1732-4254 .- 1732-4254. ; 40:40, s. 1-196
-
Other publication (other academic/artistic)abstract
- This 40th anniversary issue of BGSS highlights some of the tenets of the complexity that make sustainability a ‘wicked problem’ through a number of different perspectives, many of which have to date been pushed into the background amidst an otherwise exceptionally rich geographical literature on sustainability. The editorial task included procurement, administration and scientific processing of 12 articles from 25 authors as follows: (1) Mirek Dymitrow, Keith Halfacree – “Sustainability–differently”; (2) Slobodan Arsovski, Michał Kwiatkowski, Aleksandra Lewandowska, Dimitrinka Jordanova Peshevska, Emilija Sofeska, Mirek Dymitrow – “Can urban environmental problems be overcome? The case of Skopje—world’s most polluted city”; (3) Janis Birkeland – “Challenging policy barriers in sustainable urban design”; (4) Elizabeth Dessie – “Applying resilience thinking to ‘ordinary’ cities: A theoretical inquiry”; (5) Madeleine Eriksson, Aina Tollefsen – “The production of the rural landscape and its labour: The development of supply chain capitalism in the Swedish berry industry”; (6) Stina Hansson – “The role of trust in shaping urban planning in local communities: The case of Hammarkullen, Sweden”; (7) Shelley Kotze – “The place of community values within community-based conservation: The case of Driftsands Nature Reserve, Cape Town”; (8) Davide Marino, Luigi Mastronardi, Agostino Giannelli, Vincenzo Giaccio, Giampiero Mazzocchi – “Territorialisation dynamics for Italian farms adhering to Alternative Food Networks”; (9) E. Gunilla Almered Olsson – “Urban food systems as vehicles for sustainability transitions”; (10) George Mark Onyango – “Urban public transport in informal settlements: Experiences from Kisumu City, Kenya”; (11) Christian M. Rogerson – “Informality and migrant entrepreneurs in Cape Town’s inner city”; (12) Marcin Wójcik, Karolina Dmochowska-Dudek, Pamela Jeziorska-Biel, Paulina Tobiasz-Lis – “Understanding strategies for overcoming peripherality: A Polish experience of transition”. The articles have been reviewed by a cadre of 40 reviewers from 34 academic institutions across 14 countries.
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| 25. |
- Pendrill, Florence, 1983
(author)
-
Where have all the forests gone? Quantifying pantropical deforestation drivers
- 2022
-
Doctoral thesis (other academic/artistic)abstract
- Deforestation across the tropics continues to be a major source of greenhouse gas emissions and the largest threat to biodiversity on land. With strengthened commitments to reduce deforestation from countries and companies alike, it is crucial that renewed investments for reducing deforestation be guided by a sound understanding of what drives deforestation. This thesis gives a comprehensive picture of the amount of deforestation and concomitant carbon emissions driven by the expansion of agricultural commodities across the tropics and its link to international trade. The included papers show that pasture and a handful of crops drive a large share of the deforestation resulting in the expansion of productive agriculture. The main demand for these commodities is domestic consumption; even so, imports of food commodities associated with deforestation can still constitute a large part of the consumer countries’ carbon emissions due to consumption (e.g., in the EU). This thesis contributes empirical evidence relating to forest transition theories by showing that many countries with increasing forest cover tend to import products associated with deforestation elsewhere, thereby offsetting around one-third of their forest gains. The thesis also introduces a conceptual distinction between two categories of agriculture-driven deforestation, based on whether it results in productive agricultural land or not. Though almost all deforestation is agriculture-driven, one-third to one-half of agriculture-driven deforestation occurs without the expansion of productive agricultural land. Instead, it may be due to several potential mechanisms, such as land speculation, tenure issues, or fires. Put together, these results indicate that it is crucial that policies to curb deforestation go beyond focusing only on trade in specific commodities, to help foster concerted action on rural development, territorial governance, and land-use planning. This thesis also highlights key evidence gaps on the links between deforestation and agriculture: (i) the attribution of deforestation to specific commodities currently often relies on coarse or outdated data, (ii) there is a need for improved data on deforestation trends, and (iii) our understanding of deforestation drivers is systematically poorer for dry forests and Africa.
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| 26. |
- Messing, Ingmar
(author)
-
Land and land use : Natural preconditions
- 2011
-
In: Agriculture and Forestry in Sweden since 1900- a cartographic description. - 9789187760617 ; , s. 14-22
-
Book chapter (other academic/artistic)
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| 27. |
- Messing, Ingmar
(author)
-
Marken i Sverige : Naturliga förutsättningar
- 2011
-
In: Sveriges nationalatlas. Jordbruk och skogsbruk i Sverige sedan år 1900: en kartografisk beskrivning. - 9789187760594 ; , s. 14-22
-
Book chapter (other academic/artistic)
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| 28. |
- Tunon, Håkan, et al.
(author)
-
Kulturarv och hållbar utveckling
- 2010
-
In: Bebyggelsehistorisk tidskrift. - : Föreningen Bebyggelsehistorisk tidskrift. - 0349-2834 .- 2002-3812. ; , s. 99–106-
-
Journal article (other academic/artistic)
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| 29. |
- Bengtsson-Palme, Johan, 1985, et al.
(author)
-
Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data
- 2013
-
In: Methods in Ecology and Evolution. - 2041-210X. ; 4:10, s. 914-919
-
Journal article (peer-reviewed)abstract
- The nuclear ribosomal internal transcribed spacer (ITS) region is the primary choice for molecular identification of fungi. Its two highly variable spacers (ITS1 and ITS2) are usually species specific, whereas the intercalary 5.8S gene is highly conserved. For sequence clustering and blast searches, it is often advantageous to rely on either one of the variable spacers but not the conserved 5.8S gene. To identify and extract ITS1 and ITS2 from large taxonomic and environmental data sets is, however, often difficult, and many ITS sequences are incorrectly delimited in the public sequence databases. We introduce ITSx, a Perl-based software tool to extract ITS1, 5.8S and ITS2 – as well as full-length ITS sequences – from both Sanger and high-throughput sequencing data sets. ITSx uses hidden Markov models computed from large alignments of a total of 20 groups of eukaryotes, including fungi, metazoans and plants, and the sequence extraction is based on the predicted positions of the ribosomal genes in the sequences. ITSx has a very high proportion of true-positive extractions and a low proportion of false-positive extractions. Additionally, process parallelization permits expedient analyses of very large data sets, such as a one million sequence amplicon pyrosequencing data set. ITSx is rich in features and written to be easily incorporated into automated sequence analysis pipelines. ITSx paves the way for more sensitive blast searches and sequence clustering operations for the ITS region in eukaryotes. The software also permits elimination of non-ITS sequences from any data set. This is particularly useful for amplicon-based next-generation sequencing data sets, where insidious non-target sequences are often found among the target sequences. Such non-target sequences are difficult to find by other means and would contribute noise to diversity estimates if left in the data set.
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| 30. |
- Unterseher, Martin, et al.
(author)
-
Mycobiomes of sympatric Amorphophallus albispathus (Araceae) and Camellia sinensis (Theaceae) – a case study reveals clear tissue preferences and differences in diversity and composition
- 2018
-
In: Mycological Progress. - : Springer Science and Business Media LLC. - 1617-416X .- 1861-8952. ; 17:4, s. 489-500
-
Journal article (peer-reviewed)abstract
- Multiple biotic and abiotic parameters influence the dynamics of individual fungal species and entire communities. Major drivers for tropical plant endophytes are undoubtedly seasonality, local habitat conditions and biogeography. However, host specialization and tissue preferences also contribute to the structuring of endophytic mycobiomes. To elucidate such specializations and preferences, we sampled two commercially important, unrelated plant species, Amorphophallus albispathus and Camellia sinensis (tea plant) simultaneously at close proximity. The mycobiomes of different tissue types were assessed with high-throughput amplicon sequencing of the internal transcribed spacer DNA region. Both plants hosted different fungal communities and varied in α- and β-diversity, despite their neighboring occurrence. However, the fungal assemblages of Amorphophallus leaflets shared taxa with the mycobiomes of tea leaves, thereby suggesting common driving forces for leaf-inhabiting fungi irrespective of host plant identity. The mycobiome composition and diversity of tea leaves was clearly driven by leaf age. We suggest that the very youngest tea leaves are colonized by stochastic processes, while mycobiomes of old leaves are rather similar as the result of progressive succession. The biodiversity of fungi associated with A. albispathus was characterized by a large number of unclassified OTUs (at genus and species level) and by tissue-specific composition.This study is the first cultivation-independent high-throughput assessment of fungal biodiversity of an Amorphophallus species, and additionally expands the knowledge base on fungi associated with tea plants.
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| 31. |
- Ode Sang, Åsa, et al.
(author)
-
Are path choices of people moving through urban green spaces explained by gender and age? Implications for planning and management
- 2020
-
In: Urban Forestry & Urban Greening. - : Elsevier BV. - 1618-8667 .- 1610-8167. ; 49
-
Journal article (peer-reviewed)abstract
- Neighbourhood green space is an important asset for the urban population, providing valuable ecosystem services such as supporting human health. Distance or access to urban green areas is well established as being important for the potential use of the area but how different demographic groups move within greenspace is still somewhat unknown. Previous studies have shown that there are gender as well as age differences in visual perception, audio experience and recreational activities as well as estimated well-being experienced from use of urban green space. Here we explored people's movement within their local green space in the city of Gothenburg, Sweden. The results showed that movement took place over large parts of the green spaces studied, not only along paths. The data further showed that the movement pattern differed significantly between men and women as well as between young adults and old adults. Movement patterns of demographic groups could provide support to planning for sustainable urban green areas, help avoid conflict, identify areas for solitude and ensure equal access for people of different gender and age.
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| 32. |
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| 33. |
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| 34. |
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| 35. |
- Kreuger, Jenny, et al.
(author)
-
Bekämpningsmedel i vattendrag från områden med odling av trädgårdsgrödor under 2008
- 2009
-
Reports (other academic/artistic)abstract
- Den nuvarande miljöövervakningen av bekämpningsmedel (växtskyddsmedel) är främst inriktad mot att undersöka eventuellt läckage av växtskyddsmedel som används inom jordbruket. Däremot saknar vi kunskap om hur dessa medel uppträder i miljön vid användning inom trädgårdsodlingen. I vissa delar av södra Sverige finns betydande områden med frilandsodling av bär, frukt och grönsaker, samt växthusanläggningar. Växthus har i vissa sammanhang betraktats som ’slutna miljöer’. Detta har gjort att man inte alltid haft samma höga krav när man bedömt risken för skadliga effekter i omgivande vatten av växtskyddsmedel som används i just växthus jämfört med användning på våra åkrar.Syftet med undersökningen var att utveckla kunskapen om eventuellt läckage av växtskyddsmedel som används inom frilandsodling av trädgårdsgrödor och i växthus till vatten. Undersökningen, som genomfördes under 2008, är den hitintills mest omfattande när det gäller antalet undersökta växtskyddsmedel i svenska vattendrag. Analyserna omfattade 126 enskilda substanser, varav 39 inte undersökts tidigare inom den nationella miljöövervakningen.I undersökningen ingick provtagning i vattendrag från sex områden med betydande odling av trädgårdsgrödor. Frilandsodling av bär förekom i avrinningsområdet i SÖ Småland, grönsaker i NÖ Skåne och frukt i SÖ Skåne. Växthusodling förekom i avrinningsområdet i V Skåne och NV Skåne. I dessa områden togs ett tiotal prover per område under perioden maj-oktober 2008. Därutöver analyserades ett tjugotal vattenprover från ett av de områden som ingår i den ordinarie miljöövervakningen (område N 34 i Halland). Ett fåtal prover togs också på överskottsvatten från växthus.Totalt påträffades 78 av de 126 substanser som ingick i undersökningen, med en spridning på mellan 24 och 44 substanser i vatten från de enskilda områdena. Flest substanser och högre halter påträffades i området med intensiv grönsaksodling i NÖ Skåne, från området i Halland och från de två områdena med växthusodling. Lägre halter och färre substanser återfanns i vatten från området i SÖ Småland med odling av jordgubbar och från området i SÖ Skåne med äppelodlingar.Riktvärdet överskreds i flertalet prov som samlades in från området i NÖ Skåne och i samtliga prov från de två växthusområdena (V Skåne och NV Skåne), med högst överskridanden i de två sistnämnda områdena. Insektsmedlet imidakloprid var den substans som oftast återfanns över riktvärdet i denna undersökning. Vissa av de substanser som påträffades i förhöjda halter i vatten från områden med växthusodling återfanns också i de prover som togs på överskottsvatten från växthus. Även substanser med en betydande användning i prydnadsväxtodling i växthus påträffades i vattendraget i V Skåne. Resultaten visar att det finns läckage av växtskyddsmedel från svenska växthus. Arbete med att identifiera möjliga riskmoment i samband med växtskyddsarbete i växthus, i syfte att minska förlusterna av växtskyddsmedel till omgivande vatten, bör därför vidareutvecklas.
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| 36. |
- Nilsson, R. Henrik, 1976, et al.
(author)
-
Introducing guidelines for publishing DNA-derived occurrence data through biodiversity data platforms
- 2022
-
In: Metabarcoding and Metagenomics. - : Pensoft Publishers. - 2534-9708. ; 6, s. 239-244
-
Journal article (peer-reviewed)abstract
- DNA sequencing efforts of environmental and other biological samples disclose unprecedented and largely untapped opportunities for advances in the taxonomy, ecology, and geographical distributions of our living world. To realise this potential, DNA-derived occurrence data (notably sequences with dates and coordinates) – much like traditional specimens and observations – need to be discoverable and interpretable through biodiversity data platforms. The Global Biodiversity Information Facility (GBIF) recently headed a community effort to assemble a set of guidelines for publishing DNA-derived data. These guidelines target the principles and approaches of exposing DNA-derived occurrence data in the context of broader biodiversity data. They cover a choice of terms using a controlled vocabulary, common pitfalls, and good practices, without going into platform-specific details. Our hope is that they will benefit anyone interested in better exposure of DNA-derived occurrence data through general biodiversity data platforms, including national biodiversity portals. This paper provides a brief rationale and an overview of the guidelines, an up-to-date version of which is maintained at https://doi.org/10.35035/doc-vf1a-nr22. User feedback and interaction are encouraged as new techniques and best practices emerge.
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| 37. |
- Englund, Oskar, et al.
(author)
-
Beneficial land use change: Strategic expansion of new biomass plantations can reduce environmental impacts from EU agriculture
- 2020
-
In: Global Environmental Change. - : Elsevier BV. - 0959-3780 .- 1872-9495. ; 60
-
Journal article (peer-reviewed)abstract
- Society faces the double challenge of increasing biomass production to meet the future demands for food, materials and bioenergy, while addressing negative impacts of current (and future) land use. In the discourse, land use change (LUC) has often been considered as negative, referring to impacts of deforestation and expansion of biomass plantations. However, strategic establishment of suitable perennial production systems in agricultural landscapes can mitigate environmental impacts of current crop production, while providing biomass for the bioeconomy. Here, we explore the potential for such “beneficial LUC” in EU28. First, we map and quantify the degree of accumulated soil organic carbon losses, soil loss by wind and water erosion, nitrogen emissions to water, and recurring floods, in ∼81.000 individual landscapes in EU28. We then estimate the effectiveness in mitigating these impacts through establishment of perennial plants, in each landscape. The results indicate that there is a substantial potential for effective impact mitigation. Depending on criteria selection, 10–46% of the land used for annual crop production in EU28 is located in landscapes that could be considered priority areas for beneficial LUC. These areas are scattered all over Europe, but there are notable “hot-spots” where priority areas are concentrated, e.g., large parts of Denmark, western UK, The Po valley in Italy, and the Danube basin. While some policy developments support beneficial LUC, implementation could benefit from attempts to realize synergies between different Sustainable Development Goals, e.g., “Zero hunger”, “Clean water and sanitation”, “Affordable and Clean Energy”, “Climate Action”, and “Life on Land”.
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| 38. |
- Tedersoo, Leho, et al.
(author)
-
Standardizing metadata and taxonomic identification in metabarcoding studies
- 2015
-
In: GigaScience. - : Oxford University Press (OUP). - 2047-217X .- 2047-217X. ; 4
-
Journal article (peer-reviewed)abstract
- High-throughput sequencing-based metabarcoding studies produce vast amounts of ecological data, but a lack of consensus on standardization of metadata and how to refer to the species recovered severely hampers reanalysis and comparisons among studies. Here we propose an automated workflow covering data submission, compression, storage and public access to allow easy data retrieval and inter-study communication. Such standardized and readily accessible datasets facilitate data management, taxonomic comparisons and compilation of global metastudies.
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| 39. |
- Ebitu, Larmbert, et al.
(author)
-
Citizen science for sustainable agriculture : A systematic literature review
- 2021
-
In: Land use policy. - : Elsevier. - 0264-8377 .- 1873-5754. ; 103
-
Research review (peer-reviewed)abstract
- Farmers as volunteers in research could potentially provide a rich resource for exploring sustainable agricultural research questions. To discern emerging patterns in citizen science-based studies on topics with relevance for sustainable agriculture and reveal salient challenges and opportunities for conducting such studies, we conducted a literature review of 27 articles from the period 2004–2019 of 250 publications screened from Google Scholar. These articles were thematically grouped under the topics: Soil health, climate adaptation, pest/pathogen monitoring, invasive species, inputs and outputs and pollination. Participants’ characteristics, motivations, study design and project outcomes in the reviewed articles were summarized and discussed. Both observational and experimental studies were represented in the articles, while emerging trends point towards field experimentation and ‘Large-N′ trials by lay farmers. Crowdsourcing lends itself to projects where the main role of the public is local visual observations and reporting, such as in pest/pathogen monitoring. Challenges included methodological issues such as validation procedures, but above all motivation, recruitment, and retention of volunteers. Despite the importance of participatory approaches for deeper citizen involvement for sustainability transitions and for the quality of knowledge outcomes, the role of citizens was overall restricted to data collection. Several of the methodologies proposed would be difficult to implement in low-income countries, and relatively few studies pertained to agricultural concerns of the global South. To lend value to farmers' time, we recommend projects relevant to livelihoods, health issues or local farming problems, accompanied by well-structured data feedback protocols, routing study results back to farmers.
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| 40. |
- Nilsson, R. Henrik, 1976, et al.
(author)
-
Top 50 most wanted fungi
- 2016
-
In: MycoKeys. - : Pensoft Publishers. - 1314-4057 .- 1314-4049. ; 12, s. 29-40
-
Journal article (peer-reviewed)abstract
- Environmental sequencing regularly recovers fungi that cannot be classified to any meaningful taxonomic level beyond “Fungi”. There are several examples where evidence of such lineages has been sitting in public sequence databases for up to ten years before receiving scientific attention and formal recognition. In order to highlight these unidentified lineages for taxonomic scrutiny, a search function is presented that produces updated lists of approximately genus-level clusters of fungal ITS sequences that remain unidentified at the phylum, class, and order levels, respectively. The search function (https://unite.ut.ee/top50.php) is implemented in the UNITE database for molecular identification of fungi, such that the underlying sequences and fungal lineages are open to third-party annotation. We invite researchers to examine these enigmatic fungal lineages in the hope that their taxonomic resolution will not have to wait another ten years or more.
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| 41. |
- Klapwijk, Maartje, et al.
(author)
-
Capturing complexity : Forests, decision-making and climate change mitigation action
- 2018
-
In: Global Environmental Change. - : Elsevier. - 0959-3780 .- 1872-9495. ; 52, s. 238-247
-
Journal article (peer-reviewed)abstract
- Managed forests can play an important role in climate change mitigation due to their capacity to sequester carbon. However, it has proven difficult to harness their full potential for climate change mitigation. Managed forests are often referred to as socio-ecological systems as the human dimension is an integral part of the system. When attempting to change systems that are influenced by factors such as collective knowledge, social organization, understanding of the situation and values represented in society, initial intentions often shift due to the complexity of political, social and scientific interactions. Currently, the scientific literature is dispersed over the different factors related to the socio-ecological system. To examine the level of dispersion and to obtain a holistic view, we review climate change mitigation in the context of Swedish forest research. We introduce a heuristic framework to understand decision-making connected to climate change mitigation. We apply our framework to two themes which span different dimensions in the socio-ecological system: carbon accounting and bioenergy. A key finding in the literature was the perception that current uncertainties regarding the reliability of different methods of carbon accounting inhibits international agreement on the use of forests for climate change mitigation. This feeds into a strategic obstacle affecting the willingness of individual countries to implement forest-related carbon emission reduction policies. Decisions on the utilization of forests for bioenergy are impeded by a lack of knowledge regarding the resultant biophysical and social consequences. This interacts negatively with the development of institutional incentives regarding the production of bioenergy using forest products. Normative disagreement about acceptable forest use further affects these scientific discussions and therefore is an over-arching influence on decision-making. With our framework, we capture this complexity and make obstacles to decision-making more transparent to enable their more effective resolution. We have identified the main research areas concerned with the use of managed forest in climate change mitigation and the obstacles that are connected to decision making.
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| 42. |
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| 43. |
- Cafaro, Philip, et al.
(author)
-
Fewer people would help preserve biodiversity: A response to Hughes et al. (2023)
- 2023
-
In: Biological Conservation. - 0006-3207. ; 282
-
Journal article (peer-reviewed)abstract
- “Smaller human populations are neither a necessary nor sufficient condition for biodiversity conservation,” according to Alice Hughes and colleagues. We agree that reducing human numbers is not sufficient for preserving biodiversity; whether it’s necessary depends on how high we set the bar for successful conservation. If we hope to preserve robust populations of most of the world’s remaining wild species and their habitats, the evidence suggests human populations will have to be considerably reduced.
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| 44. |
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| 45. |
- Andersson-Sköld, Yvonne, et al.
(author)
-
A framework for assessing urban greenery's effects and valuing its ecosystem services
- 2018
-
In: Journal of Environmental Management. - : Academic Press. - 0301-4797 .- 1095-8630. ; 205, s. 274-285
-
Journal article (peer-reviewed)abstract
- Ongoing urban exploitation is increasing pressure to transform urban green spaces, while there is increasing awareness that greenery provides a range of important benefits to city residents. In efforts to help resolve associated problems we have developed a framework for integrated assessments of ecosystem service (ES) benefits and values provided by urban greenery, based on the ecosystem service cascade model. The aim is to provide a method for assessing the contribution to, and valuing, multiple ES provided by urban greenery that can be readily applied in routine planning processes. The framework is unique as it recognizes that an urban greenery comprises several components and functions that can contribute to multiple ecosystem services in one or more ways via different functional traits (e.g. foliage characteristics) for which readily measured indicators have been identified. The framework consists of five steps including compilation of an inventory of indicator; application of effectivity factors to rate indicators' effectiveness; estimation of effects; estimation of benefits for each ES; estimation of the total ES value of the ecosystem. The framework was applied to assess ecosystem services provided by trees, shrubs, herbs, birds, and bees, in green areas spanning an urban gradient in Gothenburg, Sweden. Estimates of perceived values of ecosystem services were obtained from interviews with the public and workshop activities with civil servants. The framework is systematic and transparent at all stages and appears to have potential utility in the existing spatial planning processes.
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| 46. |
- Beier, Ulrika, et al.
(author)
-
Fisk och fiske i Mälaren
- 2015
-
Reports (pop. science, debate, etc.)abstract
- Nära en tredjedel av Sveriges befolkning bor i Mälardalen. Mälaren är Sveriges tredje största sjö och en av de artrikaste beträffande fisk. Sjön är både flikig och mångsidig. Ömsom kantas den av slätter med intensivt jordbruk och stora vassområden, ömsom av karga klippor och grusstränder. Här finns omväxlande små och stora öar, grunda vikar, trånga sund och stora, djupa fjärdar. Mälaren har förorenats under århundraden och är fortfarande delvis övergödd. Trots det tjänar den som landets största dricksvattentäkt. Två miljoner människor får dricksvatten från Mälaren. Länge har fokus varit på sjöns vattenkvalitet, både för att dricka och bada i. Mälaren är också viktig som fiskesjö. Fiske i Mälaren innebär oftast rekreation men sjön försörjer också cirka trettio yrkesfiskare. Sist men inte minst - fisken i Mälaren är en viktig del i dess ekosystem. Genom näringsväven återkopplar fisken oundvikligen till vattnets kvalitet. I den här rapporten vill vi sätta Mälarens fisk i fokus. Vi ska berätta om fiskarter som är viktiga för ekosystemet och fisket samt om hur fisken i Mälaren undersöks.
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| 47. |
- Sonesten, Lars
(author)
-
Miljöövervakningen av Sveriges sjöar och vattendrag : Representativiteten av den kontrollerande miljöövervakningen
- 2013
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Reports (other academic/artistic)abstract
- Samtliga ytvattenkategorier inom ett vattendistrikt ska omfattas av övervakningsprogram inklusive övervakningsnät för kontrollerande övervakning som upprättas enligt kap. 7 VFF. En översyn av hur representativt Sveriges kontrollerade övervakningsnät är har tidigare inte kunnat utföras på grund av omfattande kvalitetsbrister i länsstyrelserna och vattenmyndigheternas datasystem VISS (VattenInformationsSystem Sverige). Kvaliteten på informationen i VISS har under senare år genomgått en omfattande kvalitetssäkring, vilket har gett förutsättningarna för att nu kunna genomföra den sammanställning och översyn över den svenska miljöövervakningen av sjöar och vattendrag. Denna översyn har varit starkt önskad under flera år, då det finns ett stort behov av att se över och analysera hur ett representativt samordnat kontrollerande övervakningsprogram skulle kunna se ut. Översynen sker mot bakgrund av den samlade vatten övervakning som bedrivs i Sverige, bland annat för att optimera befintlig övervakning och att kunna förstärka den där brister har identifierats. Arbetet är också viktigt för att säkerställa att kommande rapporteringar såväl internationellt som nationellt blir så bra som möjligt.Uppdraget för projektet Representativ kontrollerande miljöövervakning (RepKöp) syftar till att ta fram ett förslag på hur ett representativt kontrollerande övervakningsprogram med avseende på (vattentyper), kvalitetsfaktorer och statusklasser bör se ut på nationell och distriktsnivå i Sverige. Förslaget tas fram mot bakgrund av den samlade vattenövervakningen som bedrivs i Sverige idag och mot bakgrund av vad behövs för att uppfylla vattendirektivets krav på kontrollerande övervakning av vattenförekomster.Resultaten från översynen är tänkta att dels fungera som underlag för att underlätta Havs och vattenmyndighetens och Vattenmyndigheternas arbete inför rapporteringen 2012, men framför allt ska projektet ge underlag för att ta fram optimerade övervakningsprogram för sjöar och vattendrag till en långsiktig plan med en första anhalt 2016. För att RepKÖP ska få praktisk betydelse i övervakningsSverige skall projektet resultera i ett underlag för framtida revision av befintliga övervakningsprogram för respektive distrikt.Arbetet inom RepKöp är uppdelat i flera delar, vilka tillsammans ska fungera som vägledning till:• Vattenförvaltningens arbete med kontrollerande övervakning• Upplägg av nationell och regional miljöövervakningMålgruppen för arbetet är i första hand:• Vattenmyndigheter• Länsstyrelserna• Naturvårdsverket• Havs och vattenmyndigheten• Datavärdar och utförare av miljöövervakningFöreliggande rapport är en sammanställning och analys av miljöövervakningen av svenska sjöar och vattendrag så som de beskrevs i VISS vid datauttaget för sjöar i oktober 2011 och vattendrag i maj 2012. Sammanställningen av informationen från VISS har initierat en hel del korrigeringar i systemet, men tyvärr har det inte av praktiska skäl varit möjligt att ta hänsyn till dessa i arbetet. Man skall vara medveten om att VISS är en levande databas som ständigt uppdateras och korrigeras, vilket gör att endast en ”ögonblicksbild” kan analyseras. Detta gör att när analysen är färdig har verkligheten med stor sannolikhet redan till viss del hunnit förändrats.
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| 48. |
- Thulin, Carl-Gustaf
(author)
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Utsättning av arter : möjlighet för bevarandebiologin
- 2010
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In: Biodiverse. - 1401-5064. ; 15, s. 8-9
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Journal article (pop. science, debate, etc.)abstract
- Ett halvöppet, lövträdsdominerat landskap med betande hjortdjur, visenter, förvildad nötboskap och vildsvin, jagade av livskraftiga populationer av varg, björn och lo. Utopier och vilda fantasier? Kanske i delar, men något håller definitivt på att hända med bevarandet, återskapandet och skötseln av de europeiska vildmarkerna
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| 49. |
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| 50. |
- Mårtensson, Fredrika, et al.
(author)
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The role of greenery for physical activity play at school grounds
- 2014
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In: Urban Forestry & Urban Greening. - : Elsevier BV. - 1618-8667 .- 1610-8167. ; 13:1, s. 103-113
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Journal article (peer-reviewed)abstract
- Greenery is assumed to promote physical activity at school grounds by facilitating open and flexible play situations that engage many children. The role of greenery for school ground activity was investigated at two schools, one of which contained a substantial amount of greenery and the other one little greenery. All in all 197 children from 4th (10-11 years) and 6th grade (12-13 years), were involved in a one week field study, documenting self-reported school ground use, their favourite places and favourite activities and counting their steps by pedometer. The most common school ground activities were related to the use of balls as part of different sports, games and other playful activity. The more extensive green areas belonged to children's favourite places, but were little used, whereas settings with a mix of green and built elements in proximity to buildings were well-used favourites. Physical activity in steps was similar at the two schools, but on average girls got less of the activity they need during recess. Greenery was found important by contributing to settings attractive to visit for girls as well as boys and for younger as well as older children, if located in ways that also supported peer interaction and various games. (C) 2013 Elsevier G'mbH. All rights reserved.
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