1. |
- Afshar, Mastaneh, et al.
(författare)
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Complete Genome Sequences of Two Staphylococcus saccharolyticus Strains Isolated from Prosthetic Joint Infections
- 2021
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Ingår i: Microbiology Resource Announcements. - : American Society for Microbiology. - 2576-098X. ; 10:10
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Tidskriftsartikel (refereegranskat)abstract
- Staphylococcus saccharolyticus is a human skin bacterium and is occasionally associated with prosthetic joint infections (PJIs). Here, we report the complete genome sequences of two strains that were isolated from shoulder and hip PJIs. The genomes show signs of reductive evolution; around 21% of all coding sequences are inactivated by frameshift mutations.
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2. |
- Armstrong, Ellie E., et al.
(författare)
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Draft Genome Sequence and Annotation of the Lichen-Forming Fungus Arthonia radiata
- 2018
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Ingår i: Microbiology Resource Announcements. - : AMER SOC MICROBIOLOGY. - 2576-098X. ; 6:14
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Tidskriftsartikel (refereegranskat)abstract
- We report here the draft de novo genome assembly, transcriptome assembly, and annotation of the lichen-forming fungus Arthonia radiata (Pers.) Ach., the type species for Arthoniomycetes, a class of lichen-forming, lichenicolous, and saprobic Ascomycota. The genome was assembled using overlapping paired-end and mate pair libraries and sequenced on an Illumina HiSeq 2500 instrument.
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3. |
- Aulitto, Martina, 1991, et al.
(författare)
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Draft genome sequence of bacillus coagulans ma-13, a thermophilic lactic acid producer from lignocellulose
- 2019
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Ingår i: Microbiology Resource Announcements. - 2576-098X. ; 8:23
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Tidskriftsartikel (refereegranskat)abstract
- Bacillus coagulans MA-13 is an efficient lactic acid producer which withstands high concentrations of the growth inhibitors formed during the pretreatment of lignocellulosic feedstock. This draft genome sequence is expected to pave the way toward the understanding of mechanisms responsible for the robustness of MA-13 during simultaneous saccharification and fermentation.
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4. |
- Berg, Mikael
(författare)
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Complete genome of Avian coronavirus vaccine strains Ma5 and BR-I
- 2017
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Ingår i: Microbiology Resource Announcements. - 2576-098X. ; 5
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Tidskriftsartikel (refereegranskat)abstract
- Avian coronavirus (AvCoV) is a ubiquitous multiple-serotype pathogen of poultry, and its control is mainly based on the use of vaccines. We report here the previously unknown full genomes of the Ma5 (27,652 nucleotides [nt]) and BR-I (27,618 nt) AvCoV vaccine strains of the GI-1 (Massachusetts) and GI-11 (Brazil) types.
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5. |
- Berg, Mikael
(författare)
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The complete genome of Avian coronavirus D274 strain
- 2018
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Ingår i: Microbiology Resource Announcements. - 2576-098X. ; 7
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Tidskriftsartikel (refereegranskat)abstract
- Avian coronavirus, the causative agent of avian infectious bronchitis, occurs as multiple genotypes and lineages, and full genomes are not available for the majority of them. This paper reports the (previously unknown) complete genome sequence of strain D274 of this virus (27,599 nucleotides), isolated from chickens in The Netherlands in 1979.
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6. |
- Brink, Daniel P., et al.
(författare)
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Draft Genome Assembly of Stutzerimonas sp. Strain S1 and Achromobacter spanius Strain S4, Two Syringol-Metabolizing Bacteria Isolated from Compost Soil
- 2023
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Ingår i: Microbiology Resource Announcements. - : American Society for Microbiology. - 2576-098X. ; 12:3
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Tidskriftsartikel (refereegranskat)abstract
- Two bacterial strains able to use syringol as a sole carbon source were isolated from compost. The isolates, named S1 and S4, were sequenced using the Illumina platform. The final assemblies contained 4.2 Mbp, 63% GC, and 3,912 genes for S1 and 6.2 Mbp, 64% GC, and 5,503 genes for S4.
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7. |
- Cuomo, Christina A., et al.
(författare)
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Draft Genome Sequence of the Cellulolytic Fungus Chaetomium globosum
- 2015
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Ingår i: Microbiology Resource Announcements. - 2576-098X. ; 3:1
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Tidskriftsartikel (refereegranskat)abstract
- Chaetomium globosum is a filamentous fungus typically isolated from cellulosic substrates. This species also causes superficial infections of humans and, more rarely, can cause cerebral infections. Here, we report the genome sequence of C. globosum isolate CBS 148.51, which will facilitate the study and comparative analysis of this fungus.
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8. |
- Dobler, G., et al.
(författare)
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Complete Genome Sequence of a Low-Virulence Tick-Borne Encephalitis Virus Strain
- 2016
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Ingår i: Microbiology Resource Announcements. - Washington : American Society for Microbiology. - 2576-098X. ; 4:5
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Tidskriftsartikel (refereegranskat)abstract
- We report here the complete genome sequence (GenBank accession no. KX268728) of tick-borne encephalitis strain HB171/11, isolated from an Ixodes ricinus tick from a natural focus where human neurological disease is rare. The strain shows unique characteristics in neuroinvasiveness and neurovirulence.
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9. |
- Duran, R. E., et al.
(författare)
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Complete Genome Sequence of the Marine Hydrocarbon Degrader Alcaligenes aquatilis QD168, Isolated from Crude Oil-Polluted Sediment of Quintero Bay, Central Chile
- 2019
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Ingår i: Microbiology Resource Announcements. - : American Society for Microbiology. - 2576-098X. ; 8:5
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Tidskriftsartikel (refereegranskat)abstract
- Alcaligenes aquatilis strain QD168 (= CCUG 69566) is a marine hydrocarbon-degrading bacterium isolated from crude oil-polluted sediment from Quintero Bay, Central Chile. Here, we present the 4.32-Mb complete genome sequence of strain QD168, with 3,892 coding sequences, 58 tRNAs, and a 56.3% G+C content.
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10. |
- El Zowalaty, Mohamed E., et al.
(författare)
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Draft Genome Sequence of Listeria innocua Strain MEZLIS29, Isolated from a Cow in South Africa
- 2022
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Ingår i: Microbiology Resource Announcements. - : American Society for Microbiology. - 2576-098X. ; 11:3
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Tidskriftsartikel (refereegranskat)abstract
- Here, we report the draft genome sequence of Listeria innocua strain MEZLIS29, which was isolated from a healthy cow in Flagstaff, Eastern Cape Province, South Africa. The genome was sequenced using the Illumina MiSeq platform and had a length of 2,805,865 bp, with a G+C content of 37.5% and 2,783 coding DNA sequences, 58 tRNAs, 4 noncoding RNAs, and 8 rRNA genes.
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11. |
- El Zowalaty, Mohamed E., et al.
(författare)
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Genome Sequence of Listeria innocua Strain MEZLIS26, Isolated from a Goat in South Africa
- 2019
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Ingår i: Microbiology Resource Announcements. - 2576-098X. ; 8:44
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Tidskriftsartikel (refereegranskat)abstract
- Here, we report the draft genome sequence of Listeria innocua strain MEZLIS26, isolated from a healthy goat in Flagstaff, Eastern Cape Province, South Africa. The genome was sequenced using the Illumina MiSeq platform and had a length of 2,800,777 bp, with a G+C content of 37.4%, 2,755 coding DNA sequences (CDSs), 49 transfer RNAs (tRNAs), and 4 noncoding RNAs (ncRNAs).
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12. |
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13. |
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14. |
- Granberg, Fredrik, et al.
(författare)
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Complete Genome Sequence of an African Swine Fever Virus Isolate from Sardinia, Italy
- 2016
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Ingår i: Microbiology Resource Announcements. - 2576-098X. ; 4
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Tidskriftsartikel (refereegranskat)abstract
- Previous genetic characterization of African swine fever virus isolates from the Italian island of Sardinia, where the virus has been present since 1978, has largely been limited to a few selected genomic regions. Here, we report the complete genome sequence of the isolate 47/Ss/08 collected during an outbreak in 2008.
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15. |
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16. |
- Hodorova, Viktoria, et al.
(författare)
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Genome Sequence of the Yeast Saprochaete ingens CBS 517.90
- 2019
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Ingår i: Microbiology Resource Announcements. - : AMER SOC MICROBIOLOGY. - 2576-098X. ; 8:50
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Tidskriftsartikel (refereegranskat)abstract
- Chromosome-scale genome assembly of the yeast Saprochaete ingens CBS 517.90 was determined by a combination of technologies producing short (HiSeq X; Illumina) and long (MinION; Oxford Nanopore Technologies) reads. The 21.2-Mbp genome sequence has a GC content of 36.9% and codes for 6,475 predicted proteins.
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17. |
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18. |
- Karlsson, Philip, et al.
(författare)
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Complete Genome Assembly of Multidrug-Resistant Yersinia enterocolitica Y72, Isolated in Sweden
- 2021
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Ingår i: Microbiology Resource Announcements. - : American Society for Microbiology. - 2576-098X. ; 10:19
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Tidskriftsartikel (refereegranskat)abstract
- Here, we report the complete genome sequence of a Swedish clinicalstrain of Yersinia enterocolitica, Y72. With emerging Yersinia outbreaks circulating inNordic countries, the Y72 genome will provide more insights on the genetic relatedness and antibiotic resistance dissemination in future studies.
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19. |
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20. |
- Lichancova, Hana, et al.
(författare)
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Genome Sequence of Flavor-Producing Yeast Saprochaete suaveolens NRRL Y-17571
- 2019
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Ingår i: Microbiology Resource Announcements. - : AMER SOC MICROBIOLOGY. - 2576-098X. ; 8:9
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Tidskriftsartikel (refereegranskat)abstract
- Saprochaete suaveolens is an ascomycetous yeast that produces a range of fruity flavors and fragrances. Here, we report the high-contiguity genome sequence of the ex-holotype strain, NRRL Y-17571 (CBS 152.25). The nuclear genome sequence contains 24.4 Mbp and codes for 8,119 predicted proteins.
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21. |
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22. |
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23. |
- Marcisauskas, Simonas, 1988, et al.
(författare)
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Draft genome sequences of five fungal strains isolated from Kefir
- 2021
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Ingår i: Microbiology Resource Announcements. - 2576-098X. ; 10:21
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Tidskriftsartikel (refereegranskat)abstract
- We present the annotated draft genome sequences of five fungal strains isolated from kefir grains. These isolates included three ascomycetous (Candida californica, Kazachstania exigua, and Kazachstania unispora) and one basidiomycetous (Rhodotorula mucilaginosa) species. The results revealed a detailed overview of the metabolic features of kefir fungi that will be potentially useful in biotechnological applications.
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24. |
- Méndez, V., et al.
(författare)
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Complete genome sequence of the hydrocarbon-degrading strain achromobacter sp. B7, isolated during petroleum hydrocarbon bioremediation in the valparaiso region, Chile
- 2018
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Ingår i: Microbiology Resource Announcements. - 2576-098X. ; 7:19
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Tidskriftsartikel (refereegranskat)abstract
- Achromobacter sp. strain B7 (= CCUG 72081) was isolated from a diesel-polluted soil from the Valparaiso Region, Chile, subjected to bioremediation with a hydrocarbon-degrading enrichment. The complete genome sequence of Achromobacter sp. B7 has been determined to have a size of 6.24 Mb, 5,578 coding sequences, 57 tRNAs, and a G+C content of 64.8%. © 2018 Méndez et al.
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25. |
- Modikwe, Gorata, et al.
(författare)
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Complete Genome Sequence of an Antimicrobial-Producing Bacillus velezensis Sam8H1 Isolate from the Makgadikgadi Saltpans of Botswana
- 2021
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Ingår i: Microbiology Resource Announcements. - 2576-098X. ; 10:17
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Tidskriftsartikel (refereegranskat)abstract
- The global antimicrobial drug resistance crisis requires urgency in searching for more effective broad-spectrum antimicrobial drugs. Here, we present a complete circular genome sequence and a plasmid of an antimicrobial-producing isolate, Bacillus velezensis strain Sam8H1, from the Makgadikgadi saltpans in Botswana. Bioinformatic analyses revealed 12 putative secondary metabolite biosynthetic gene clusters important for genome-guided drug discovery studies.
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26. |
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27. |
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28. |
- Piatkowski, Bryan T., et al.
(författare)
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Draft Metagenome Sequences of the Sphagnum (Peat Moss) Microbiome from Ambient and Warmed Environments across Europe
- 2022
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Ingår i: Microbiology Resource Announcements. - : American Society for Microbiology. - 2576-098X. ; 11:10
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Tidskriftsartikel (refereegranskat)abstract
- We present 49 metagenome assemblies of the microbiome associated with Sphagnum (peat moss) collected from ambient, artificially warmed, and geothermally warmed conditions across Europe. These data will enable further research regarding the impact of climate change on plant-microbe symbiosis, ecology, and ecosystem functioning of northern peatland ecosystems.
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29. |
- Puente Sanchez, Fernando
(författare)
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Draft genome sequence of three hydrocarbon-degrading Pseudomonadota strains isolated from an abandoned century-old oil exploration well
- 2024
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Ingår i: Microbiology Resource Announcements. - 2576-098X. ; 13
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Tidskriftsartikel (refereegranskat)abstract
- We present genome sequences of three Pseudomonadota strains isolated from an abandoned century-old oil exploration well. A Pseudomonas sp. genome showed a size of 5,378,420 bp, while Acinetobacter genomes sized 3,522,593 and 3,864,311 bp. Genomes included catabolic genes for benzoate, 4-hydroxybenzoate, salicylate, vanillate, indoleacetate, anthranilate, n-alkanes, 4-hydroxyphenylacetate, phenylacetate, among others.
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30. |
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31. |
- Sagerfors, Susanna, 1977-, et al.
(författare)
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Complete Genome Sequences of Two Corynebacterium macginleyi Strains Isolated from Infectious Keratitis
- 2021
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Ingår i: Microbiology Resource Announcements. - : American Society for Microbiology. - 2576-098X. ; 10:17
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Tidskriftsartikel (refereegranskat)abstract
- Corynebacterium macginleyi is a slow-growing, lipid-requiring bacterium that may cause ocular infections. Here, we report the complete genome sequences of two strains, T160811 and T180208, isolated from infectious keratitis. The two genomes consist of circular chromosomes of 2,431,961 bp and 2,481,998 bp, respectively, and contain high numbers of repetitive elements.
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32. |
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33. |
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34. |
- Sangprasert, Pongsathorn, et al.
(författare)
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Complete reference genomes of two ceftriaxone-resistant Neisseria gonorrhoeae strains identified in routine surveillance in Bangkok, Thailand, using Nanopore Q20+ chemistry, VolTRAX V2b, and Illumina sequencing
- 2024
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Ingår i: Microbiology Resource Announcements. - : American Society for Microbiology. - 2576-098X. ; 13:3
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Tidskriftsartikel (refereegranskat)abstract
- Ceftriaxone-resistant Neisseria gonorrhoeae strains, mostly associated with Asia, threaten gonorrhea treatment. We report the reference genomes of two ceftriaxone-resistant isolates found in routine surveillance in Bangkok, Thailand. The genomes belonged to the more antimicrobial-susceptible genomic lineage B, illustrating that both ceftriaxone-resistant strains and the mosaic penA-60.001 ceftriaxone-resistance determinant are spreading.
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35. |
- Schnürer, Anna
(författare)
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Complete genome sequence of the methanogen Methanoculleus bourgensis BA1 isolated from a biogas reactor
- 2016
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Ingår i: Microbiology Resource Announcements. - 2576-098X. ; 4
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Tidskriftsartikel (refereegranskat)abstract
- Methanoculleus bourgensis BA1, a hydrogenotrophic methanogen, was isolated from a laboratory-scale biogas reactor operating under an elevated ammonium concentration. Here, the complete genome sequence of M. bourgensis BA1 is reported. The availability of the BA1 genome sequence enables detailed comparative analyses involving other Methanoculleus spp. representing important members of microbial biogas communities.
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36. |
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37. |
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38. |
- Sternes, Peter R., et al.
(författare)
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Genome Sequences of Three Species of Hanseniaspora Isolated from Spontaneous Wine Fermentations
- 2016
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Ingår i: Microbiology Resource Announcements. - : AMER SOC MICROBIOLOGY. - 2576-098X. ; 4:6
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Tidskriftsartikel (refereegranskat)abstract
- Members of the genus Hanseniaspora represent a significant proportion of the normal flora of grape berries and play a significant role in wine fermentation. Here, we present genome sequences for three species of Hanseniaspora, H. opuntiae, H. osmophila, and H. uvarum, which were isolated from spontaneous Chardonnay wine fermentation.
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39. |
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40. |
- Tellgren-Roth, C., et al.
(författare)
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Complete Genome Sequence and Methylome of the Type Strain of Shewanella algae
- 2021
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Ingår i: Microbiology Resource Announcements. - : American Society for Microbiology. - 2576-098X. ; 10:31
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Tidskriftsartikel (refereegranskat)abstract
- We report the complete genome sequence and base modification analysis of the Shewanella algae type strain CECT 5071 (= OK-1 = ATCC 51192 = DSM 9167 = IAM 14159). The genome is composed of a single chromosome of 4,924,764 bp, with a GC content of 53.10%.
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41. |
- Tellgren-Roth, Christian, 1971-, et al.
(författare)
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Complete Genome Sequence and Methylome of the Type Strain of Shewanella algae
- 2021
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Ingår i: Microbiology Resource Announcements. - : American Society for Microbiology. - 2576-098X. ; 10:31
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Tidskriftsartikel (refereegranskat)abstract
- We report the complete genome sequence and base modification analysis of the Shewanella algae type strain CECT 5071 (= OK-1 = ATCC 51192 = DSM 9167 = IAM 14159). The genome is composed of a single chromosome of 4,924,764 bp, with a GC content of 53.10%.
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42. |
- Thorell, Kaisa, et al.
(författare)
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Complete genome sequences of two marine Vibrio cholerae strains isolated from the south coast of Sweden
- 2016
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Ingår i: Genome Announcements. - : American Society for Microbiology. - 2169-8287 .- 2576-098X. ; 4:5
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Tidskriftsartikel (refereegranskat)abstract
- Vibrio cholerae serogroups O1 and O139 are commonly associated with diarrhea, while non-O1-O139 strains may cause wound infections. Here, we present the genome sequences of two V. cholerae strains isolated from blue mussels (Mytilus edulis) collected in coastal waters of southern Sweden.
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43. |
- Tükenmez, Hasan, 1987-, et al.
(författare)
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Complete Genome Sequence of the Uropathogenic Methicillin-Resistant Staphylococcus aureus Strain MRSA-1369
- 2022
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Ingår i: Microbiology Resource Announcements. - : American Society for Microbiology. - 2576-098X. ; 11:10
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Tidskriftsartikel (refereegranskat)abstract
- MRSA-1369 is a uropathogenic methicillin-resistant Staphylococcus aureus (MRSA) strain. Here, we present the complete genome sequence of MRSA-1369, which consists of one chromosome (2.87 Mb) and two plasmids (16.68 kb and 3.13 kb). This will serve as a reference genome for future Staphylococcus aureus pathogenesis and multiomic studies.
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44. |
- Töpel, Mats H., 1973, et al.
(författare)
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Complete Genome Sequence of the Diatom-Associated Bacterium Sphingorhabdus sp. Strain SMR4y
- 2019
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Ingår i: Microbiology Resource Announcements. - : American Society for Microbiology. - 2576-098X. ; 8:29
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Tidskriftsartikel (refereegranskat)abstract
- The bacterial strain SMR4y belongs to the diverse microbiome of the marine diatom Skeletonema marinoi strain R05AC. After assembly of its genome, presented here, and subsequent analyses, we placed it in the genus Sphingorhabdus. This strain has a 3,479,724-bp circular chromosome (with 3,340 coding sequences) and no known plasmids.
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45. |
- Töpel, Mats H., 1973, et al.
(författare)
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Genome sequence of arenibacter algicola strain SMS7, found in association with the marine diatom skeletonema marinoi
- 2019
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Ingår i: Microbiology Resource Announcements. - 2576-098X. ; 8
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Tidskriftsartikel (refereegranskat)abstract
- Copyright © 2019 Töpel et al. Arenibacter algicola strain SMS7 was isolated from a culture of the marine diatom Skeletonema marinoi strain ST54, sampled from top-layer sediments in Kosterfjord, Sweden. Here, we present its 5,857,781-bp genome, consisting of a circular chromosome and one circular plasmid, in all containing 4,932 coding sequences.
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46. |
- Vosseberg, Julian, et al.
(författare)
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Draft Genome Sequence of "Candidatus Moanabacter tarae," Representing a Novel Marine Verrucomicrobial Lineage
- 2018
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Ingår i: Microbiology Resource Announcements. - : AMER SOC MICROBIOLOGY. - 2576-098X. ; 7:15
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Tidskriftsartikel (refereegranskat)abstract
- The Tara Oceans Consortium has published various metagenomes of marine environmental samples. Here, we report a contig of 2.6 Mbp from the assembly of a sample collected near the Marquesas Islands in the Pacific Ocean, covering a nearly complete novel verrucomicrobial genome. We propose the name "Candidates Moanabacter tarae" for the corresponding bacterium.
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47. |
- Zlatkov, Nikola, 1985-, et al.
(författare)
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Comparative label-free proteomics of the neonatal meningitis-causing Escherichia coli K1 IHE3034 and RS218 morphotypes
- 2024
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Ingår i: Microbiology Resource Announcements. - : American Society for Microbiology. - 2576-098X. ; 13:2
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Tidskriftsartikel (refereegranskat)abstract
- The proteome of two newborn meningitis Escherichia coli K1 (NMEC) morphotypes was examined via a label-free proteomics approach. Besides shared NMEC virulence factors, the two strains have different evolutionary strategies-strain IHE3034 tends to perform anaerobic respiration continuously, while strain RS218 maintains its filamentous morphotype due to active SOS response.
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