| 1. |
- Park, S. W., et al.
(författare)
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Cyclophilin 20-3 relays a 12-oxo-phytodienoic acid signal during stress responsive regulation of cellular redox homeostasis
- 2013
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Ingår i: Proceedings of the National Academy of Sciences of the United States of America. - : Proceedings of the National Academy of Sciences. - 0027-8424. ; 110:23, s. 9559-9564
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Tidskriftsartikel (refereegranskat)abstract
- The jasmonate family of phytohormones plays central roles in plant development and stress acclimation. However, the architecture of their signaling circuits remains largely unknown. Here we describe a jasmonate family binding protein, cyclophilin 20-3 (CYP20-3), which regulates stress-responsive cellular redox homeostasis. (+)-12-oxo-phytodienoic acid (OPDA) binding promotes CYP20-3 to form a complex with serine acetyltransferase 1, which triggers the formation of a hetero-oligomeric cysteine synthase complex with O-acetylserine (thiol) lyase B in chloroplasts. The cysteine synthase complex formation then activates sulfur assimilation that leads to increased levels of thiol metabolites and the buildup of cellular reduction potential. The enhanced redox capacity in turn coordinates the expression of a subset of OPDA-responsive genes. Thus, we conclude that CYP20-3 is a key effector protein that links OPDA signaling to amino acid biosynthesis and cellular redox homeostasis in stress responses.
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| 2. |
- Xing, K. Z., et al.
(författare)
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The electronic and geometric structures of neutral and potassium-doped poly[3-(4-octylphenyl)thiophene] studied by photoelectron spectroscopy
- 1996
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Ingår i: Synthetic metals. - : Elsevier. - 0379-6779 .- 1879-3290. ; 76:1-3, s. 263-267
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Tidskriftsartikel (refereegranskat)abstract
- The electronic and geometric structures of poly [3-(4-octylphenyl)thiophene] have been studied by X-ray and ultraviolet photoelectron spectroscopy (XPS and UPS, respectively). Thermochromic effects, and new charge induced states generated by potassium doping, have been observed by direct UPS measurements. The experimental results are in very good agreement with the results of theoretical quantum chemical calculations performed with the Austin Model 1 semi-empirical model and the valence-effective Hamiltonian pseudo-potential model.
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| 3. |
- Xing, K. Z., et al.
(författare)
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The electronic structure of neutral and alkali metal-doped poly[3-(4-octylphenyl)thiophene] studied by photoelectron spectroscopy
- 1996
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Ingår i: Synthetic metals. - : Elsevier. - 0379-6779 .- 1879-3290. ; 80:1, s. 59-66
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Tidskriftsartikel (refereegranskat)abstract
- The electronic structure of poly [3-(4-octylphenyl)thiophene] (POPT) has been studied by ultraviolet photoelectron spectroscopy (UPS) and X-ray photoelectron spectroscopy (XPS), as well as by quantum chemical calculations. Both temperature-dependent effects on the electronic structure of the neutral system, as well as the generation of new electronic states induced by doping with alkaline metals, have been observed. The experimental results are in good agreement with the results of the quantum chemical calculations.
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| 4. |
- Andersson, Claes R., et al.
(författare)
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Revealing cell cycle control by combining model-based detection of periodic expression with novel cis-regulatory descriptors
- 2007
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Ingår i: BMC Systems Biology. - : Springer Science and Business Media LLC. - 1752-0509. ; 1, s. 45-
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Tidskriftsartikel (refereegranskat)abstract
- Background: We address the issue of explaining the presence or absence of phase-specific transcription in budding yeast cultures under different conditions. To this end we use a model-based detector of gene expression periodicity to divide genes into classes depending on their behavior in experiments using different synchronization methods. While computational inference of gene regulatory circuits typically relies on expression similarity (clustering) in order to find classes of potentially co-regulated genes, this method instead takes advantage of known time profile signatures related to the studied process. Results: We explain the regulatory mechanisms of the inferred periodic classes with cis-regulatory descriptors that combine upstream sequence motifs with experimentally determined binding of transcription factors. By systematic statistical analysis we show that periodic classes are best explained by combinations of descriptors rather than single descriptors, and that different combinations correspond to periodic expression in different classes. We also find evidence for additive regulation in that the combinations of cis-regulatory descriptors associated with genes periodically expressed in fewer conditions are frequently subsets of combinations associated with genes periodically expression in more conditions. Finally, we demonstrate that our approach retrieves combinations that are more specific towards known cell-cycle related regulators than the frequently used clustering approach. Conclusion: The results illustrate how a model-based approach to expression analysis may be particularly well suited to detect biologically relevant mechanisms. Our new approach makes it possible to provide more refined hypotheses about regulatory mechanisms of the cell cycle and it can easily be adjusted to reveal regulation of other, non-periodic, cellular processes.
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| 5. |
- Bergemalm, Daniel, 1977-, et al.
(författare)
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Systemic Inflammation in Preclinical Ulcerative Colitis
- 2021
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Ingår i: Gastroenterology. - : AGA Institute. - 0016-5085 .- 1528-0012. ; 161:5, s. 1526-1539.e9
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Tidskriftsartikel (refereegranskat)abstract
- Background & Aims: Preclinical ulcerative colitis is poorly defined. We aimed to characterize the preclinical systemic inflammation in ulcerative colitis, using a comprehensive set of proteins.Methods: We obtained plasma samples biobanked from individuals who developed ulcerative colitis later in life (n = 72) and matched healthy controls (n = 140) within a population-based screening cohort. We measured 92 proteins related to inflammation using a proximity extension assay. The biologic relevance of these findings was validated in an inception cohort of patients with ulcerative colitis (n = 101) and healthy controls (n = 50). To examine the influence of genetic and environmental factors on these markers, a cohort of healthy twin siblings of patients with ulcerative colitis (n = 41) and matched healthy controls (n = 37) were explored.Results: Six proteins (MMP10, CXCL9, CCL11, SLAMF1, CXCL11 and MCP-1) were up-regulated (P < .05) in preclinical ulcerative colitis compared with controls based on both univariate and multivariable models. Ingenuity Pathway Analyses identified several potential key regulators, including interleukin-1β, tumor necrosis factor, interferon-gamma, oncostatin M, nuclear factor-κB, interleukin-6, and interleukin-4. For validation, we built a multivariable model to predict disease in the inception cohort. The model discriminated treatment-naïve patients with ulcerative colitis from controls with leave-one-out cross-validation (area under the curve = 0.92). Consistently, MMP10, CXCL9, CXCL11, and MCP-1, but not CCL11 and SLAMF1, were significantly up-regulated among the healthy twin siblings, even though their relative abundances seemed higher in incident ulcerative colitis.Conclusions: A set of inflammatory proteins are up-regulated several years before a diagnosis of ulcerative colitis. These proteins were highly predictive of an ulcerative colitis diagnosis, and some seemed to be up-regulated already at exposure to genetic and environmental risk factors.
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| 6. |
- Bundgaard, E., et al.
(författare)
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Matrix Organization and Merit Factor Evaluation as a Method to Address the Challenge of Finding a Polymer Material for Roll Coated Polymer Solar Cells
- 2015
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Ingår i: Advanced Energy Materials. - : Wiley. - 1614-6840 .- 1614-6832. ; 5:10, s. Art. no. 1402186-
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Tidskriftsartikel (refereegranskat)abstract
- The results presented demonstrate how the screening of 104 light-absorbing low band gap polymers for suitability in roll coated polymer solar cells can be accomplished through rational synthesis according to a matrix where 8 donor and 13 acceptor units are organized in rows and columns. Synthesis of all the polymers corresponding to all combinations of donor and acceptor units is followed by characterization of all the materials with respect to molecular weight, electrochemical energy levels, band gaps, photochemical stability, carrier mobility, and photovoltaic parameters. The photovoltaic evaluation is carried out with specific reference to scalable manufacture, which includes large area (1 cm(2)), stable inverted device architecture, an indium-tin-oxide-free fully printed flexible front electrode with ZnO/PEDOT:PSS (poly(3,4-ethylenedioxythiophene):polystyrene sulfonate), and a printed silver comb back electrode structure. The matrix organization enables fast identification of active layer materials according to a weighted merit factor that includes more than simply the power conversion efficiency and is used as a method to identify the lead candidates. Based on several characteristics included in the merit factor, it is found that 13 out of the 104 synthesized polymers outperformed poly(3-hexylthiophene) under the chosen processing conditions and thus can be suitable for further development.
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| 7. |
- Enroth, Stefan, et al.
(författare)
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A strand specific high resolution normalization method for chip-sequencing data employing multiple experimental control measurements
- 2012
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Ingår i: Algorithms for Molecular Biology. - : Springer Science and Business Media LLC. - 1748-7188. ; 7, s. 2-
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Tidskriftsartikel (refereegranskat)abstract
- Background: High-throughput sequencing is becoming the standard tool for investigating protein-DNA interactions or epigenetic modifications. However, the data generated will always contain noise due to e. g. repetitive regions or non-specific antibody interactions. The noise will appear in the form of a background distribution of reads that must be taken into account in the downstream analysis, for example when detecting enriched regions (peak-calling). Several reported peak-callers can take experimental measurements of background tag distribution into account when analysing a data set. Unfortunately, the background is only used to adjust peak calling and not as a preprocessing step that aims at discerning the signal from the background noise. A normalization procedure that extracts the signal of interest would be of universal use when investigating genomic patterns.Results: We formulated such a normalization method based on linear regression and made a proof-of-concept implementation in R and C++. It was tested on simulated as well as on publicly available ChIP-seq data on binding sites for two transcription factors, MAX and FOXA1 and two control samples, Input and IgG. We applied three different peak-callers to (i) raw (un-normalized) data using statistical background models and (ii) raw data with control samples as background and (iii) normalized data without additional control samples as background. The fraction of called regions containing the expected transcription factor binding motif was largest for the normalized data and evaluation with qPCR data for FOXA1 suggested higher sensitivity and specificity using normalized data over raw data with experimental background.Conclusions: The proposed method can handle several control samples allowing for correction of multiple sources of bias simultaneously. Our evaluation on both synthetic and experimental data suggests that the method is successful in removing background noise.
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| 8. |
- Gadisa, Abay, et al.
(författare)
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Transparent polymer cathode for organic photovoltaic devices
- 2006
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Ingår i: Synthetic metals. - : Elsevier BV. - 0379-6779 .- 1879-3290. ; 156:16-17, s. 1102-1107
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Tidskriftsartikel (refereegranskat)abstract
- We demonstrate a prototype solar cell with a transparent polymer cathode, and indium-tin-oxide (ITO)/poly (3, 4-ethylene dioxythiophene)-poly (styrene sulphonate) (PEDOT:PSS) anode. As an active layer, thin film of a bulk heterojunction of polyfluorene copolymer poly[2,7-(9,9-dioctyl-fluorene)-alt-5,5-(4′,7′-di-2thienyl-2′,1′3′-benzothiadiazole)] (APFO-3) and an electron acceptor molecule [6] and [6]-phenyl-C61-butyric acid methyl ester (PCBM) (1:4 wt.) was sandwiched between the two transparent polymer electrodes. The cathode is another form of PEDOT formed by vapor phase polymerised PEDOT (VPP PEDOT) of conductivity 102–103 S/cm. The cathode is supported on an elastomeric substrate, and forms a conformal contact to the APFO-3/PCBM blend. Transparent solar cells are useful for building multilayer and tandem solar cells.
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| 9. |
- Loisel, Julie, et al.
(författare)
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A database and synthesis of northern peatland soil properties and Holocene carbon and nitrogen accumulation
- 2014
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Ingår i: The Holocene. - : SAGE Publications. - 0959-6836 .- 1477-0911. ; 24:9, s. 1028-1042
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Tidskriftsartikel (refereegranskat)abstract
- Here, we present results from the most comprehensive compilation of Holocene peat soil properties with associated carbon and nitrogen accumulation rates for northern peatlands. Our database consists of 268 peat cores from 215 sites located north of 45 degrees N. It encompasses regions within which peat carbon data have only recently become available, such as the West Siberia Lowlands, the Hudson Bay Lowlands, Kamchatka in Far East Russia, and the Tibetan Plateau. For all northern peatlands, carbon content in organic matter was estimated at 42 +/- 3% (standard deviation) for Sphagnum peat, 51 +/- 2% for non-Sphagnum peat, and at 49 +/- 2% overall. Dry bulk density averaged 0.12 +/- 0.07 g/cm(3), organic matter bulk density averaged 0.11 +/- 0.05 g/cm(3), and total carbon content in peat averaged 47 +/- 6%. In general, large differences were found between Sphagnum and non-Sphagnum peat types in terms of peat properties. Time-weighted peat carbon accumulation rates averaged 23 +/- 2 (standard error of mean) g C/m(2)/yr during the Holocene on the basis of 151 peat cores from 127 sites, with the highest rates of carbon accumulation (25-28 g C/m(2)/yr) recorded during the early Holocene when the climate was warmer than the present. Furthermore, we estimate the northern peatland carbon and nitrogen pools at 436 and 10 gigatons, respectively. The database is publicly available at https://peatlands.lehigh.edu.
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| 10. |
- Mihalič, Filip, et al.
(författare)
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Conservation of Affinity Rather Than Sequence Underlies a Dynamic Evolution of the Motif-Mediated p53/MDM2 Interaction in Ray-Finned Fishes
- 2024
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Ingår i: Molecular biology and evolution. - : Oxford University Press. - 0737-4038 .- 1537-1719. ; 41:2
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Tidskriftsartikel (refereegranskat)abstract
- The transcription factor and cell cycle regulator p53 is marked for degradation by the ubiquitin ligase MDM2. The interaction between these 2 proteins is mediated by a conserved binding motif in the disordered p53 transactivation domain (p53TAD) and the folded SWIB domain in MDM2. The conserved motif in p53TAD from zebrafish displays a 20-fold weaker interaction with MDM2, compared to the interaction in human and chicken. To investigate this apparent difference, we tracked the molecular evolution of the p53TAD/MDM2 interaction among ray-finned fishes (Actinopterygii), the largest vertebrate clade. Intriguingly, phylogenetic analyses, ancestral sequence reconstructions, and binding experiments showed that different loss-of-affinity changes in the canonical binding motif within p53TAD have occurred repeatedly and convergently in different fish lineages, resulting in relatively low extant affinities (KD = 0.5 to 5 mu M). However, for 11 different fish p53TAD/MDM2 interactions, nonconserved regions flanking the canonical motif increased the affinity 4- to 73-fold to be on par with the human interaction. Our findings suggest that compensating changes at conserved and nonconserved positions within the motif, as well as in flanking regions of low conservation, underlie a stabilizing selection of "functional affinity" in the p53TAD/MDM2 interaction. Such interplay complicates bioinformatic prediction of binding and calls for experimental validation. Motif-mediated protein-protein interactions involving short binding motifs and folded interaction domains are very common across multicellular life. It is likely that the evolution of affinity in motif-mediated interactions often involves an interplay between specific interactions made by conserved motif residues and nonspecific interactions by nonconserved disordered regions.
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| 11. |
- Persson, Ingemar, 1985-, et al.
(författare)
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Sub-4 nm mapping of donor-acceptor organic semiconductor nanoparticle composition
- 2023
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Ingår i: Nanoscale. - : ROYAL SOC CHEMISTRY. - 2040-3364 .- 2040-3372. ; 15:13, s. 6126-6142
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Tidskriftsartikel (refereegranskat)abstract
- We report, for the first time, sub-4 nm mapping of donor : acceptor nanoparticle composition in eco-friendly colloidal dispersions for organic electronics. Low energy scanning transmission electron microscopy (STEM) energy dispersive X-ray spectroscopy (EDX) mapping has revealed the internal morphology of organic semiconductor donor : acceptor blend nanoparticles at the sub-4 nm level. A unique element was available for utilisation as a fingerprint element to differentiate donor from acceptor material in each blend system. Si was used to map the location of donor polymer PTzBI-Si in PTzBI-Si:N2200 nanoparticles, and S (in addition to N) was used to map donor polymer TQ1 in TQ1:PC71BM nanoparticles. For select material blends, synchrotron-based scanning transmission X-ray microscopy (STXM), was demonstrated to remain as the superior chemical contrast technique for mapping organic donor : acceptor morphology, including for material combinations lacking a unique fingerprint element (e.g. PTQ10:Y6), or systems where the unique element is in a terminal functional group (unsaturated, dangling bonds) and can hence be easily damaged under the electron beam, e.g. F on PTQ10 donor polymer in the PTQ10:IDIC donor : acceptor blend. We provide both qualitative and quantitative compositional mapping of organic semiconductor nanoparticles with STEM EDX, with sub-domains resolved in nanoparticles as small as 30 nm in diameter. The sub-4 nm mapping technology reported here shows great promise for the optimisation of organic semiconductor blends for applications in organic electronics (solar cells and bioelectronics) and photocatalysis, and has further applications in organic core-shell nanomedicines.
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| 12. |
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| 13. |
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| 14. |
- Aarnio, H., et al.
(författare)
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Photoinduced absorption in an alternating polyfluorene copolymer for photovoltaic applications
- 2006
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Ingår i: Chemical Physics. ; 321:1-2, s. 127-132
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Tidskriftsartikel (refereegranskat)abstract
- The authors present a detailed study of a novel alternating polyfluorene copolymer, poly[2,7-(9,9-dioctyl-fluorene)-alt-5,5-(4',7'-di-2-thienyl-2',1',3-benzo-thiadiazole)], and its blends with the fullerene deriv. [6,6]-phenyl-C61-butyric acid Me ester, using continuous wave photoinduced absorption (PA) techniques. The authors also present the use of phase information from the PA measurements for estg. the no. of different photoexcitation types present in the PA spectra as well as their lifetimes. In all blends the PA spectra show a broad high-energy PA band ranging from .apprx.1 to 2 eV as well as a low-energy band at .apprx.0.35 eV. The authors find two kinds of excitations present at 80 DegK, polarons showing dispersive recombination with lifetimes of roughly a millisecond, and a 2nd kind of photoexcitation tentatively assigned to coulombically bound intrachain polaron pairs showing practically nondispersive recombination with a lifetime of .apprx.20 ms. [on SciFinder (R)]
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| 15. |
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| 16. |
- Admassie, Shimelis, et al.
(författare)
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Electrochemical and optical studies of the band gaps of alternating polyfluorene copolymers
- 2006
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Ingår i: Synthetic metals. - : Elsevier BV. - 0379-6779 .- 1879-3290. ; 156:7-8, s. 614-623
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Tidskriftsartikel (refereegranskat)abstract
- The electrochemical and optical properties of a series of alternating polyfluorene copolymers with low band gaps were determined. These polymers incorporated fluorene units alternating with groups including electron-withdrawing (A) and electron-donating (D) groups in donor-acceptor-donor (DAD) sequence to achieve the lowering of band gaps. The polymers were solvent-casted on platinum disk electrode and the band gaps were estimated from cyclic voltammetry (CV). These values were compared with values obtained from optical absorption measurements. Although the electrochemically determined band gaps were found to be slightly higher than the optical band gap in most cases, values are well correlated. The values of the band gaps determined range from 2.1 to 1.3 eV. © 2006 Elsevier B.V. All rights reserved.
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| 17. |
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| 18. |
- Andersson, Claes R., et al.
(författare)
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Bayesian detection of periodic mRNA time profiles withouth use of training examples
- 2006
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Ingår i: BMC Bioinformatics. - : Springer Science and Business Media LLC. - 1471-2105. ; 7, s. 63-
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Tidskriftsartikel (refereegranskat)abstract
- BACKGROUND: Detection of periodically expressed genes from microarray data without use of known periodic and non-periodic training examples is an important problem, e.g. for identifying genes regulated by the cell-cycle in poorly characterised organisms. Commonly the investigator is only interested in genes expressed at a particular frequency that characterizes the process under study but this frequency is seldom exactly known. Previously proposed detector designs require access to labelled training examples and do not allow systematic incorporation of diffuse prior knowledge available about the period time. RESULTS: A learning-free Bayesian detector that does not rely on labelled training examples and allows incorporation of prior knowledge about the period time is introduced. It is shown to outperform two recently proposed alternative learning-free detectors on simulated data generated with models that are different from the one used for detector design. Results from applying the detector to mRNA expression time profiles from S. cerevisiae showsthat the genes detected as periodically expressed only contain a small fraction of the cell-cycle genes inferred from mutant phenotype. For example, when the probability of false alarm was equal to 7%, only 12% of the cell-cycle genes were detected. The genes detected as periodically expressed were found to have a statistically significant overrepresentation of known cell-cycle regulated sequence motifs. One known sequence motif and 18 putative motifs, previously not associated with periodic expression, were also over represented. CONCLUSION: In comparison with recently proposed alternative learning-free detectors for periodic gene expression, Bayesian inference allows systematic incorporation of diffuse a priori knowledge about, e.g. the period time. This results in relative performance improvements due to increased robustness against errors in the underlying assumptions. Results from applying the detector to mRNA expression time profiles from S. cerevisiae include several new findings that deserve further experimental studies.
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| 19. |
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| 20. |
- Andersson, Claes R., et al.
(författare)
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In vitro drug sensitivity-gene expression correlations involve a tissue of origin dependency
- 2007
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Ingår i: Journal of chemical information and modeling. - : American Chemical Society (ACS). - 1549-9596 .- 1549-960X. ; 47:1, s. 239-248
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Tidskriftsartikel (refereegranskat)abstract
- A major concern of chemogenomics is to associate drug activity with biological variables. Several reports have clustered cell line drug activity profiles as well as drug activity-gene expression correlation profiles and noted that the resulting groupings differ but still reflect mechanism of action. The present paper shows that these discrepancies can be viewed as a weighting of drug-drug distances, the weights depending on which cell lines the two drugs differ in.
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| 21. |
- Andersson, Claes R., et al.
(författare)
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Quantitative Chemogenomics : Machine-Learning Models of Protein-Ligand Interaction
- 2011
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Ingår i: Current Topics in Medicinal Chemistry. - : Bentham Science Publishers Ltd.. - 1568-0266 .- 1873-4294. ; 11:15, s. 1978-1993
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Forskningsöversikt (refereegranskat)abstract
- Chemogenomics is an emerging interdisciplinary field that lies in the interface of biology, chemistry, and informatics. Most of the currently used drugs are small molecules that interact with proteins. Understanding protein-ligand interaction is therefore central to drug discovery and design. In the subfield of chemogenomics known as proteochemometrics, protein-ligand-interaction models are induced from data matrices that consist of both protein and ligand information along with some experimentally measured variable. The two general aims of this quantitative multi-structure-property-relationship modeling (QMSPR) approach are to exploit sparse/incomplete information sources and to obtain more general models covering larger parts of the protein-ligand space, than traditional approaches that focuses mainly on specific targets or ligands. The data matrices, usually obtained from multiple sparse/incomplete sources, typically contain series of proteins and ligands together with quantitative information about their interactions. A useful model should ideally be easy to interpret and generalize well to new unseen protein-ligand combinations. Resolving this requires sophisticated machine-learning methods for model induction, combined with adequate validation. This review is intended to provide a guide to methods and data sources suitable for this kind of protein-ligand-interaction modeling. An overview of the modeling process is presented including data collection, protein and ligand descriptor computation, data preprocessing, machine-learning-model induction and validation. Concerns and issues specific for each step in this kind of data-driven modeling will be discussed.
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| 22. |
- Andersson, Mats R., et al.
(författare)
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Electroluminescence from Substituted Poly(thiophenes) : From Blue to Near-Infrared
- 1995
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Ingår i: Macromolecules. - : American Chemical Society. - 0024-9297 .- 1520-5835. ; 28:22, s. 7525-7529
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Tidskriftsartikel (refereegranskat)abstract
- We report a systematic approach to the control of the conjugation length along the poly(thiophene) backbone. The planarity of the main chain can be permanently modified by altering the pattern of substitution and character of the substituents on the poly(thiophene) chain, and the conjugation length is thus modified. We obtain blue, green, orange, red, and near-infrared electroluminescence from four chemically distinct poly(thiophenes). The external quantum efficiencies are in the range of 0.01-0.6%.
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| 23. |
- Andersson, Mats R., et al.
(författare)
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Improved photoluminescence efficiency of films from conjugated polymers
- 1997
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Ingår i: Synthetic metals. - : Elsevier. - 0379-6779 .- 1879-3290. ; 85:1-3, s. 1383-1384
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Tidskriftsartikel (refereegranskat)abstract
- We have demonstrated two general ways to increase the photoluminescence efficiency of films from conjugated polymers. One is to disperse the conjugated polymer on a molecular level by using attractive forces between the conjugated polymer and the matrix. The other method is to substitute the conjugated polymer with side chains which separates the conjugated backbones. Using this idea a new poly(thiophene) with a photoluminescence efficiency of 16% in films has been prepared. LEDs from this polymer exhibit an external efficiency of 0.1% for single layer and 0.7% for double layer diodes.
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| 24. |
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| 25. |
- Andersson, Mats R., et al.
(författare)
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Regioselective polymerization of 3-(4-octylphenyl)thiophene with FeCl3
- 1994
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Ingår i: Macromolecules. - : American Chemical Society. - 0024-9297 .- 1520-5835. ; 27:22, s. 6503-6506
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Tidskriftsartikel (refereegranskat)abstract
- We have shown that it is possible to regioselectively polymerize 3-(4-octylphenyl) thiophene with FeCl3. Adding FeCl3 slowly to the monomer leads to a soft and therefore regioselective polymerization. The head-to-tail content was determined by H-1 NMR to be 94 +/- 2%. Thin films of the polymer treated with chloroform vapor have an absorption maximum at 602 nm (2.06 eV) with clear vibronic fine structure. Free standing films have a conductivity of 4 S/cm, which is 100 times higher than for earlier prepared poly(3-(4-octylphenyl)thiophene). A mechanism for the regioregular polymerization is also proposed.
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| 26. |
- Andersson, Mats R., et al.
(författare)
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Synthesis of poly(alkylthiophenes) for light-emitting diodes
- 1995
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Ingår i: Synthetic metals. - : Elsevier. - 0379-6779 .- 1879-3290. ; 71:1-3, s. 2183-2184
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Tidskriftsartikel (refereegranskat)abstract
- We have demonstrated a general way to tune the emission of poly(alkylthiophenes) by using steric interaction between the repeating units. Light-emitting diodes prepared of the polymers have blue to near-infrared emission.
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| 27. |
- Andersson, R., et al.
(författare)
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Dose-response-time modelling: Second-generation turnover model with integral feedback control
- 2016
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Ingår i: European Journal of Pharmaceutical Sciences. - : Elsevier BV. - 0928-0987 .- 1879-0720. ; 81, s. 189-200
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Tidskriftsartikel (refereegranskat)abstract
- © 2015 Elsevier B.V. All rights reserved. This study presents a dose-response-time (DRT) analysis based on a large preclinical biomarker dataset on the interaction between nicotinic acid (NiAc) and free fatty acids (FFA). Data were collected from studies that examined different rates, routes, and modes of NiAc provocations on the FFA time course. All information regarding the exposure to NiAc was excluded in order to demonstrate the utility of a DRT model. Special emphasis was placed on the selection process of the biophase model. An inhibitory Imax-model, driven by the biophase amount, acted on the turnover rate of FFA. A second generation NiAc/FFA model, which encompasses integral (slow buildup of tolerance - an extension of the previously used NiAc/FFA turnover models) and moderator (rapid and oscillatory) feedback control, was simultaneously fitted to all time courses in normal rats. The integral feedback control managed to capture an observed 90% adaptation (i.e., almost a full return to baseline) when 10 days constant-rate infusion protocols of NiAc were used. The half-life of the adaptation process had a 90% prediction interval between 3.5-12 in the present population. The pharmacodynamic parameter estimates were highly consistent when compared to an exposure-driven analysis, partly validating the DRT modelling approach and suggesting the potential of DRT analysis in areas where exposure data are not attainable. Finally, new numerical algorithms, which rely on sensitivity equations to robustly and efficiently compute the gradients in the parameter optimization, were successfully used for the mixed-effects approach in the parameter estimation.
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| 28. |
- Andersson, R., et al.
(författare)
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How can regional differences in the risk-of-foreclosure be explained? : Evidence from Swedish single family housing markets
- 2008
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Ingår i: Journal of Property Research. - : Informa UK Limited. - 0959-9916 .- 1466-4453. ; 25:3, s. 179-202
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Tidskriftsartikel (refereegranskat)abstract
- In Sweden, quite large differences in the risk-of-foreclosure for single-family housing exist between regions. The aim of this paper is to explain such differences, using data on foreclosures for all Swedish regions. In an option-based model, the risk-of-foreclosure is a function of such things as housing prices and incomes, as well as interest rate and housing price volatility. Instead of using housing prices and incomes to explain the risk of foreclosure, we use explaining variables in the labor market model. The main results indicate that the option-based model explains the variation in foreclosure rates. Specifically, interest rate - together with price volatility, price changes, price and rent level, income, and employment - explains around one-third of the total regional variation. Our extended option-based model explains slightly more. Specialization within the industrial sector seems to have a positive effect on foreclosure risk in that it, together with the educational level of the workforce, reduces the risk. Specifically, mortgage lenders and banks can reduce their risk by concentrating their business on dense regions with a high degree of employment within the manufacturing industry and with a higher educational level of the workforce.
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| 29. |
- Andersson, R., et al.
(författare)
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Modeling of free fatty acid dynamics: insulin and nicotinic acid resistance under acute and chronic treatments
- 2017
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Ingår i: Journal of Pharmacokinetics and Pharmacodynamics. - : Springer Science and Business Media LLC. - 1573-8744 .- 1567-567X. ; 44:3, s. 203-222
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Tidskriftsartikel (refereegranskat)abstract
- Nicotinic acid (NiAc) is a potent inhibitor of adipose tissue lipolysis. Acute administration results in a rapid reduction of plasma free fatty acid (FFA) concentrations. Sustained NiAc exposure is associated with tolerance development (drug resistance) and complete adaptation (FFA returning to pretreatment levels). We conducted a meta-analysis on a rich pre-clinical data set of the NiAc-FFA interaction to establish the acute and chronic exposure-response relations from a macro perspective. The data were analyzed using a nonlinear mixed-effects framework. We also developed a new turnover model that describes the adaptation seen in plasma FFA concentrations in lean Sprague-Dawley and obese Zucker rats following acute and chronic NiAc exposure. The adaptive mechanisms within the system were described using integral control systems and dynamic efficacies in the traditional model. Insulin was incorporated in parallel with NiAc as the main endogenous co-variate of FFA dynamics. The model captured profound insulin resistance and complete drug resistance in obese rats. The efficacy of NiAc as an inhibitor of FFA release went from 1 to approximately 0 during sustained exposure in obese rats. The potency of NiAc as an inhibitor of insulin and of FFA release was estimated to be 0.338 and 0.436 , respectively, in obese rats. A range of dosing regimens was analyzed and predictions made for optimizing NiAc delivery to minimize FFA exposure. Given the exposure levels of the experiments, the importance of washout periods in-between NiAc infusions was illustrated. The washout periods should be 2 h longer than the infusions in order to optimize 24 h lowering of FFA in rats. However, the predicted concentration-response relationships suggests that higher AUC reductions might be attained at lower NiAc exposures.
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| 30. |
- Andersson, Ulf R., 1973-, et al.
(författare)
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In search of centre of excellence : Network embeddedness and subsidiaryroles in multinational corporations
- 2000
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Ingår i: MIR: Management International Review. - 0938-8249 .- 1861-8901. ; 40:4, s. 329-350
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Tidskriftsartikel (refereegranskat)abstract
- In this paper the authors explore the role of a subsidiary as a centre of excellencewithin the multinational corporation (MNC). It is argued that such a role can bebased on the characteristics of a subsidiary's internal resources, its relationshipswith the rest of the MNC and the business context of which the subsidiary is apart. Based on the perspective of an MNC as a Network the latter aspect is es-pecially focused. Through an analysis of 98 subsidiaries the importance of thesubsidiary's embeddedness, in terms of business relationships with specific cus-tomers and suppliers for its role as a centre of excellence, is investigated.A conceptual result from this paper is that it offers a framework for analysingthe role of the business context for the subsidiary's role as a centre of excel-lence. Productive relationships with external counterparts in the business envi-ronment can be used by the subsidiary to enhance its role as a centre of excel-lence. An empirical result is that the external embeddedness of the subsidiaryis an important and significant explanatory variable of the subsidiary's possibil-ities to be considered important to the MNC as well as a prerequisite to influ-ence the future behaviour of MNC.
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| 31. |
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| 32. |
- Anselmo, Ana Sofia, 1980-, et al.
(författare)
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Characterisation of vertical phase separation in polymer : fullerene blend films for photovoltaics by dSIMS and NEXAFS
- 2011
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Ingår i: E-MRS 2011 Spring Meeting. - Malden, MA : John Wiley & Sons. ; , s. 62-63
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Konferensbidrag (refereegranskat)abstract
- Morphological control and characterization of blend films is key in the development of viable polymer solar cells. Spontaneous formation of vertical compositional gradients during solution processing has been shown for polyfluorene:PCBM blends and rationalized with thermodynamic and kinetic models of nucleation and spinodal decomposition.[1, 2] The extent of vertical stratification is affected by polymer side-chain modification aimed at controlling polymer:fullerene miscibility.[3] Here we present high-resolution film morphology results for several polymer:fullerene systems as obtained from near-edge X-ray fine structure spectroscopy (NEXAFS) in partial and in total electron yield modes. Blend films were found to be polymer- enriched at the surface. Dynamic secondary ion mass spectrometry (dSIMS) and NEXAFS give compositional information at different depths, resulting in a more complete picture of the film morphology.
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| 33. |
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| 34. |
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| 35. |
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| 36. |
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| 37. |
- Bas-Hoogendam, Janna Marie, et al.
(författare)
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Voxel-based morphometry multi-center mega-analysis of brain structure in social anxiety disorder
- 2017
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Ingår i: NeuroImage. - : Elsevier BV. - 2213-1582. ; 16, s. 678-688
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Tidskriftsartikel (refereegranskat)abstract
- Social anxiety disorder (SAD) is a prevalent and disabling mental disorder, associated with significant psychiatric co-morbidity. Previous research on structural brain alterations associated with SAD has yielded inconsistent results concerning the direction of the changes in gray matter (GM) in various brain regions, as well as on the relationship between brain structure and SAD-symptomatology. These heterogeneous findings are possibly due to limited sample sizes. Multi-site imaging offers new opportunities to investigate SAD-related alterations in brain structure in larger samples.An international multi-center mega-analysis on the largest database of SAD structural T1-weighted 3T MRI scans to date was performed to compare GM volume of SAD-patients (n = 174) and healthy control (HC)-participants (n = 213) using voxel-based morphometry. A hypothesis-driven region of interest (ROI) approach was used, focusing on the basal ganglia, the amygdala-hippocampal complex, the prefrontal cortex, and the parietal cortex. SAD-patients had larger GM volume in the dorsal striatum when compared to HC-participants. This increase correlated positively with the severity of self-reported social anxiety symptoms. No SAD-related differences in GM volume were present in the other ROIs. Thereby, the results of this mega-analysis suggest a role for the dorsal striatum in SAD, but previously reported SAD-related changes in GM in the amygdala, hippocampus, precuneus, prefrontal cortex and parietal regions were not replicated. Our findings emphasize the importance of large sample imaging studies and the need for meta-analyses like those performed by the Enhancing NeuroImaging Genetics through Meta-Analysis (ENIGMA) Consortium.
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| 38. |
- Berggren, Magnus, et al.
(författare)
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Controlling colour by voltage in polymer light emitting diodes
- 1995
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Ingår i: Synthetic metals. - : Elsevier. - 0379-6779 .- 1879-3290. ; 71:1-3, s. 2185-2186
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Tidskriftsartikel (refereegranskat)abstract
- We report electroluminescence using different substituted polythiophenes as the emitting mterial. Different substituents cause different sterical interacion which force the thiophene rings out of planarity. This results in different bandgaps. Colours from blue to near infrared have been demonstrated in electroluminescent devices. We also demonstrate voltage controlled electroluminescence using mixtures of these polymers.
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| 39. |
- Berggren, Magnus, et al.
(författare)
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Light-emitting diodes with variable colours from polymer blends
- 1994
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Ingår i: Nature. - : Nature Publishing Group. - 0028-0836 .- 1476-4687. ; 372:6505, s. 444-446
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Tidskriftsartikel (refereegranskat)abstract
- THE range of materials now available for polymer-based light-emitting diodes (LEDs) is such that electroluminescence can be obtained throughout the visible spectrum(1-12). Here we show that, by blending polymers with different emission and charge-transport characteristics, LEDs can be fabricated in which the emission colour varies as a function of the operating voltage. This phenomenon arises from the self-organizing properties of the blends, in which entropy drives phase separation of the constituent polymers and gives rise to submicrometre-sized domains having a range of compositions and emission characteristics. Emission from domains of different composition is controlled by the ease with which charge is injected, which in turn depends on the applied voltage.
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| 40. |
- Berggren, Magnus, et al.
(författare)
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Polymer light-emitting diodes placed in microcavities
- 1996
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Ingår i: Synthetic metals. - : Elsevier. - 0379-6779 .- 1879-3290. ; 76:1-3, s. 121-123
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Tidskriftsartikel (refereegranskat)abstract
- The use of resonant optical microcavities to influence the emission properties of conjugated polymer light-emitting diodes (LEDs) is reported. The microcavities, which are built using metallic mirrors and polymeric spacers, incorporate polymer LEDs in between the mirrors. We report experimental results of polymer LEDs based on substituted polythiophenes. The effects include substantial narrowing of the spectral width of the emitted light, enhancement of the emission at the microcavity resonance, and coupling of two emission processes to different resonance modes in the same cavity.
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| 41. |
- Berggren, Magnus, et al.
(författare)
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White light from an electroluminescent diode made from poly[3(4‐octylphenyl)‐2,2′‐bithiophene] and an oxadiazole derivative
- 1994
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Ingår i: Journal of Applied Physics. - : American Institute of Physics (AIP). - 0021-8979 .- 1089-7550. ; 76:11, s. 7530-7534
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Tidskriftsartikel (refereegranskat)abstract
- We report on an electroluminescent diode emitting red, green, and blue light simultaneously. The device is based on a thin polymer layer, poly[3‐(4‐octylphenyl)‐2,2′‐bithiophene] and a thick molecular layer, 2‐(4‐biphenylyl)‐5‐(4‐tertbutyl‐phenyl)1,3,5‐oxadiazole. The quantum efficiency for light conversion is 0.3% and the turn‐on voltage for light emission is 7 V. In this article we present electric and spectroscopic characterizations. A mechanism for the light emission, based on electron and hole recombination between the two organic layers, is proposed
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| 42. |
- Bergqvist, Jonas, et al.
(författare)
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Sub-glass transition annealing enhances polymer solar cell performance
- 2014
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Ingår i: Journal of Materials Chemistry A. - : Royal Society of Chemistry. - 2050-7488. ; 2:17, s. 6146-6152
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Tidskriftsartikel (refereegranskat)abstract
- Thermal annealing of non-crystalline polymer: fullerene blends typically results in a drastic decrease in solar cell performance. In particular aggressive annealing above the glass transition temperature results in a detrimental coarsening of the blend nanostructure. We demonstrate that mild annealing below the glass transition temperature is a viable avenue to control the nanostructure of a non-crystalline thiophene-quinoxaline copolymer: fullerene blend. Direct imaging methods indicate that coarsening of the blend nanostructure can be avoided. However, a combination of absorption and luminescence spectroscopy reveals that local changes in the polymer conformation as well as limited fullerene aggregation are permitted to occur. As a result, we are able to optimise the solar cell performance evenly across different positions of the coated area, which is a necessary criterion for large-scale, high throughput production.
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| 43. |
- Bini, Kim, 1987, et al.
(författare)
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Orange to green switching anthraquinone-based electrochromic material
- 2019
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Ingår i: Journal of Applied Polymer Science. - : Wiley. - 1097-4628 .- 0021-8995. ; 136:27
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Tidskriftsartikel (refereegranskat)abstract
- An easily accessible anthraquinone-benzodithiophene-based high bandgap polymer (PTAq) was synthesized by Stille coupling reactions in remarkably high yield (96.5%). The highest occupied molecular orbital energy level of the polymer was estimated from the onset of oxidation in a cyclic voltammetry study to be -5.7 eV. PTAq showed an orange-to-green color switching with the application of a 1.0-V external potential to the polymer film, which was visible to the naked eye. The optical behavior change was also monitored using ultraviolet-visible absorption spectroscopy and revealed a respectable 75% transmittance change when the polymer film was subjected to a 1.0-V external potential. The high color contrast observed makes PTAq one of the most promising materials for electrochromic device applications. (c) 2019 Wiley Periodicals, Inc. J. Appl. Polym. Sci. 2019, 136, 47729.
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| 44. |
- Bjorstrom, Cecilia M., et al.
(författare)
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Influence of solvents and substrates on the morphology and the performance of low-bandgap polyfluorene: PCBM photovoltaic devices - art. no. 61921X
- 2006
-
Ingår i: Proceedings of SPIE, the International Society for Optical Engineering. - : International Society for Optical Engineering; 1999. - 0277-786X .- 1996-756X. ; 6192, s. X1921-X1921
-
Tidskriftsartikel (refereegranskat)abstract
- Spin-coated thin films of poly[(9,9-dioctylfluorenyl-2,7-diyl)-co-5,5-(4,7-di-2-thienyl-2,1,3-benzothiadiazole)] (APFO-3) blended with [6,6]-phenyl-C-61-butyric acid methyl ester (PCBM) are used as the active material in polymer photovoltaic cells. Such blends are known for their tendency to phase separate during film formation. Tuning the morphology of the blend in a controlled way is one possible road towards higher efficiency. We studied the effect of adding chlorobenzene to chloroform-based blend solutions before spin-coating on the conversion efficiency of APFO-3:PCBM photodiodes, and related that to the lateral and vertical morphology of thin films of the blend. The lateral morphology is imaged by atomic force microscopy (AFM) and the vertical compositional profile is obtained by dynamic secondary ion mass spectrometry (SIMS). The profiles reveal compositional variations consisting of multilayers of alternating polymer-rich and PCBM-rich domains in the blend film spin-coated from chloroform. The vertical compositional variations are caused by surface-directed spinodal waves and are frozen in during the rapid evaporation of a highly volatile solvent. With addition of the low-vapour pressure solvent chlorobenzene, a more homogeneous vertical composition is found. The conversion efficiency for solar cells of this blend was found to be optimal for chloroform: chlorobenzene mixtures with a volume-ratio of 80:1. We have also investigated the role of the substrate on the morphology. We found that blend films spin-coated from chloroform solutions on PEDOT:PSS-coated ITO show a similar compositional structure as the films on silicon, and that changing the substrate from silicon to gold only affects the vertical phase separation in a region close to the substrate interface.
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| 45. |
- Björnsson, Jon Mar, et al.
(författare)
-
Reduced proliferative capacity of hematopoietic stem cells deficient in hoxb3 and hoxb4
- 2003
-
Ingår i: Blood. - 0006-4971 .- 1528-0020. ; 23:11, s. 3872-3883
-
Tidskriftsartikel (refereegranskat)abstract
- Several homeobox transcription factors, such as HOXB3 and HOXB4, have been implicated in regulation of hematopoiesis. In support of this, studies show that overexpression of HOXB4 strongly enhances hematopoietic stem cell regeneration. Here we find that mice deficient in both Hoxb3 and Hoxb4 have defects in endogenous hematopoiesis with reduced cellularity in hematopoietic organs and diminished number of hematopoietic progenitors without perturbing lineage commitment. Analysis of embryonic day 14.5 fetal livers revealed a significant reduction in the hematopoietic stem cell pool, suggesting that the reduction in cellularity observed postnatally is due to insufficient expansion during fetal development. Primitive Lin(-) Scal(+) c-kit(+) hematopoietic progenitors lacking Hoxb3 and Hoxb4 displayed impaired proliferative capacity in vitro. Similarly, in vivo repopulating studies of Hoxb3/Hoxb4-deficient hematopoietic cells resulted in lower repopulating capability compared to normal littermates. Since no defects in homing were observed, these results suggest a slower regeneration of mutant HSC. Furthermore, treatment with cytostatic drugs demonstrated slower cell cycle kinetics of hematopoietic stem cells deficient in Hoxb3 and Hoxb4, resulting in increased tolerance to antimitotic drugs. Collectively, these data suggest a direct physiological role of Hoxb4 and Hoxb3 in regulating stem cell regeneration and that these genes are required for maximal proliferative response.
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| 46. |
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| 47. |
- Björström, Cecilia M., et al.
(författare)
-
Influence of solvents and substrates on the morphology and the performance of low-bandgap polyfluorene:PCBM photovoltaic devices
- 2006
-
Ingår i: Proceedings of SPIE, the International Society for Optical Engineering. - Cardiff : SPIE - International Society for Optical Engineering. - 0277-786X .- 1996-756X. ; 6192, s. 61921X-
-
Tidskriftsartikel (refereegranskat)abstract
- Spin-coated thin films of poly[(9,9-dioctylfluorenyl-2,7-diyl)-co-5,5-(4',7'-di-2-thienyl-2',1',3'-benzothiadiazole)] (APFO-3) blended with [6,6]-phenyl-C61-butyric acid methyl ester (PCBM) are used as the active material in polymer photovoltaic cells. Such blends are known for their tendency to phase separate during film formation. Tuning the morphology of the blend in a controlled way is one possible road towards higher efficiency. We studied the effect of adding chlorobenzene to chloroform-based blend solutions before spin-coating on the conversion efficiency of APFO-3:PCBM photodiodes, and related that to the lateral and vertical morphology of thin films of the blend. The lateral morphology is imaged by atomic force microscopy (AFM) and the vertical compositional profile is obtained by dynamic secondary ion mass spectrometry (SIMS). The profiles reveal compositional variations consisting of multilayers of alternating polymer-rich and PCBM-rich domains in the blend film spin-coated from chloroform. The vertical compositional variations are caused by surface-directed spinodal waves and are frozen in during the rapid evaporation of a highly volatile solvent. With addition of the low-vapour pressure solvent chlorobenzene, a more homogeneous vertical composition is found. The conversion efficiency for solar cells of this blend was found to be optimal for chloroform:chlorobenzene mixtures with a volume-ratio of 80:1. We have also investigated the role of the substrate on the morphology. We found that blend films spin-coated from chloroform solutions on PEDOT:PSS-coated ITO show a similar compositional structure as the films on silicon, and that changing the substrate from silicon to gold only affects the vertical phase separation in a region close to the substrate interface
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| 48. |
- Björström, Cecilia M., et al.
(författare)
-
Multilayer formation in spin-coated thin films of low-bandgap polyfluorene:PCBM blends
- 2005
-
Ingår i: Journal of Physics. - Philadelphia : Institute of Physics Publishing (IOPP). - 0953-8984 .- 1361-648X. ; 17:50, s. L529-L534
-
Tidskriftsartikel (refereegranskat)abstract
- Blends of the low-bandgap polymer poly[(9,9-dioctylfluorenyl-2,7-diyl)-co-5,5- (4',7'-di-2-thienyl-2',1',3'-benzothiadiazole] (APFO-3) and the fullerene derivative [6,6]-phenyl–C61–butyric acid methyl ester (PCBM) were spin-coated from chloroform solution into thin films, which were examined with dynamic secondary ion mass spectrometry. For blends with high PCBM content, the depth profiles show composition waves that were caused by surface-directed phase separation during spin-coating. The formation of such multilayer structures by spontaneous self-stratification is likely to have implications for optimization strategies for the performance of organic solar cells
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| 49. |
- Blaudeck, Thomas, et al.
(författare)
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Simplified Large-Area Manufacturing of Organic Electrochemical Transistors Combining Printing and a Self-Aligning Laser Ablation Step
- 2012
-
Ingår i: Advanced Functional Materials. - : Wiley-VCH Verlag Berlin. - 1616-301X .- 1616-3028. ; 22:14, s. 2939-2948
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Tidskriftsartikel (refereegranskat)abstract
- A hybrid manufacturing approach for organic electrochemical transistors (OECTs) on flexible substrates is reported. The technology is based on conventional and digital printing (screen and inkjet printing), laser processing, and post-press technologies. A careful selection of the conductive, dielectric, and semiconductor materials with respect to their optical properties enables a self-aligning pattern formation which results in a significant reduction of the usual registration problems during manufacturing. For the prototype OECTs, based on this technology, on/off ratios up to 600 and switching times of 100 milliseconds at gate voltages in the range of 1 V were obtained.
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| 50. |
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