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- Armbrecht, Linda, et al.
(author)
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Comparison of the cross-shelf phytoplankton distribution of two oceanographically distinct regions off Australia
- 2015
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In: Journal of Marine Systems. - : Elsevier BV. - 0924-7963 .- 1879-1573. ; 148, s. 26-38
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Journal article (peer-reviewed)abstract
- The coastline of Australia spans tropical to temperate latitudes and encompasses a highly diverse phytoplankton community. Yet little is known about environmental driving forces of compositional and distributional patterns in natural phytoplankton communities of Australia. We investigate the relationships of phytoplankton (pico-, nano-, microphytoplankton, determined by microscopy and CHEMTAX) with a variety of environmental variables along cross-shelf gradients. Case studies were conducted in two highly distinct oceanographic regions of Australia (2010/2012): the tropical-temperate Coffs Harbour region (similar to 30 degrees S, 153 degrees E), where the shelf is narrow (similar to 30 km), and the tropical Kimberley region (similar to 16 degrees S, 122 degrees E), where the shelf is-wide (similar to 200 km). We distinguished three water masses in both study regions: relatively cold, nutrient-rich inshore waters; oligotrophic, stratified offshore waters; and cold, nutrient-rich deep waters. Most phytoplankton taxa (cyanobacteria, cryptophytes, dinoflagellates, haptophytes and prasinophytes) showed group-specific relationships with similar environmental variables in both regions. Diatoms occurred in nutrient-rich inshore waters in the Kimberley, whereas they were widely spread across the narrow continental shelf at Coffs Harbour. Off Coffs Harbour, a senescent bloom of the diatom Leptocylindrus danicus probably caused shelf-scale surface nutrient depletion. While microphytoplankton clearly increased, pico- and nanophytoplankton decreased with distance from the coast over the wide shelf in the Kimberley region. In contrast, the abundance of individual phytoplankton size-classes remained relatively constant across the narrow Coffs Harbour shelf. We conclude that general similarities exist between the relationship of phytoplankton and cross-shelf environmental variables in the two sites and assign differences primarily to the varying spatial resolution of our case studies.
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| 2. |
- Huston, Grayson P., et al.
(author)
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Detection of fish sedimentary DNA in aquatic systems : A review of methodological challenges and future opportunities
- 2023
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In: Environmental DNA. - : John Wiley & Sons. - 2637-4943. ; 5:6, s. 1449-1472
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Journal article (peer-reviewed)abstract
- Environmental DNA studies have proliferated over the last decade, with promising data describing the diversity of organisms inhabiting aquatic and terrestrial ecosystems. The recovery of DNA present in the sediment of aquatic systems (sedDNA) has provided short- and long-term data on a wide range of biological groups (e.g., photosynthetic organisms, zooplankton species) and has advanced our understanding of how environmental changes have affected aquatic communities. However, substantial challenges remain for recovering the genetic material of macro-organisms (e.g., fish) from sediments, preventing complete reconstructions of past aquatic ecosystems, and limiting our understanding of historic, higher trophic level interactions. In this review, we outline the biotic and abiotic factors affecting the production, persistence, and transport of fish DNA from the water column to the sediments, and address questions regarding the preservation of fish DNA in sediment. We identify sources of uncertainties around the recovery of fish sedDNA arising during the sedDNA workflow. This includes methodological issues related to experimental design, DNA extraction procedures, and the selected molecular method (quantitative PCR, digital PCR, metabarcoding, metagenomics). By evaluating previous efforts (published and unpublished works) to recover fish sedDNA signals, we provide suggestions for future research and propose troubleshooting workflows for the effective detection and quantification of fish sedDNA. With further research, the use of sedDNA has the potential to be a powerful tool for inferring fish presence over time and reconstructing their population and community dynamics.
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