| 1. |
- Muhlemann, B., et al.
(författare)
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Ancient human parvovirus B19 in Eurasia reveals its long-term association with humans
- 2018
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Ingår i: Proceedings of the National Academy of Sciences of the United States of America. - : Proceedings of the National Academy of Sciences. - 0027-8424 .- 1091-6490. ; 115:29, s. 7557-7562
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Tidskriftsartikel (refereegranskat)abstract
- Human parvovirus B19 (B19V) is a ubiquitous human pathogen associated with a number of conditions, such as fifth disease in children and arthritis and arthralgias in adults. B19V is thought to evolve exceptionally rapidly among DNA viruses, with substitution rates previously estimated to be closer to those typical of RNA viruses. On the basis of genetic sequences up to similar to 70 years of age, the most recent common ancestor of all B19V has been dated to the early 1800s, and it has been suggested that genotype 1, the most common B19V genotype, only started circulating in the 1960s. Here we present 10 genomes (63.9-99.7% genome coverage) of B19V from dental and skeletal remains of individuals who lived in Eurasia and Greenland from similar to 0.5 to similar to 6.9 thousand years ago (kya). In a phylogenetic analysis, five of the ancient B19V sequences fall within or basal to the modern genotype 1, and five fall basal to genotype 2, showing a long-term association of B19V with humans. The most recent common ancestor of all B19V is placed similar to 12.6 kya, and we find a substitution rate that is an order of magnitude lower than inferred previously. Further, we are able to date the recombination event between genotypes 1 and 3 that formed genotype 2 to similar to 5.0-6.8 kya. This study emphasizes the importance of ancient viral sequences for our understanding of virus evolution and phylogenetics.
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| 2. |
- Ha, H.K., et al.
(författare)
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Circulation and modification of warm deep water on the central Amundsen Shelf
- 2014
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Ingår i: Journal of Physical Oceanography. - 0022-3670. ; 44:5, s. 1493-1501
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Tidskriftsartikel (refereegranskat)abstract
- The circulation pathways and subsurface cooling and freshening of warm deep water on the central Amundsen Sea shelf are deduced from hydrographic transects and four subsurface moorings. The Amundsen Sea continental shelf is intersected by Dotson Trough (DT) leading from the outer shelf to the deep basins on the inner shelf. During the measurement period, warm deep water was observed to flow southward on the eastern side of DT in approximate geostrophic balance. A northward outflow from the shelf was also observed along the bottom in the western side of DT. Estimates of the flow rate suggest that up to one third of the inflowing warm deep water leaves the shelf area below the thermocline in this deep outflow. The deep current was 1.2°C colder and 0.3 psu fresher than the inflow, but still warm, salty and dense compared to the overlying water mass. The temperature and salinity properties suggest that the cooling and freshening process is induced by subsurface melting of glacial ice, likely from basal melting of Dotson and Getz ice shelves. New heat budgets are presented, with a southward oceanic heat transport of 3.3 TW on the eastern side of the DT, a northward oceanic heat transport of 0.5-1.6 TW on the western side, and an ocean-to-glacier heat flux of 0.9-2.53 TW, equivalent to melting glacial ice at the rate of 83- 237 km3yr-1 . Recent satellite-based estimates of basal melt rates for the glaciers suggest comparable values, 145 km3yr-1 (Getz) and 45 km3yr-1 35 (Dotson) (Rignot et al. 2013).
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| 3. |
- Margaryan, Ashot, et al.
(författare)
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Population genomics of the Viking world
- 2020
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Ingår i: Nature. - : Springer Science and Business Media LLC. - 1476-4687 .- 0028-0836. ; 585:7825, s. 390-396
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Tidskriftsartikel (refereegranskat)abstract
- The maritime expansion of Scandinavian populations during the Viking Age (about ad750–1050) was a far-flung transformation in world history1,2. Here we sequenced the genomes of 442humans from archaeological sites across Europe and Greenland (to a median depth of about 1×) to understand the global influence of this expansion. We find the Viking period involved gene flow into Scandinavia from the south and east. We observe genetic structure within Scandinavia, with diversity hotspots in the south and restricted gene flow within Scandinavia. We find evidence for a major influx of Danish ancestry into England; a Swedish influx into the Baltic; and Norwegian influx into Ireland, Iceland and Greenland. Additionally, we see substantial ancestry from elsewhere in Europe entering Scandinavia during the Viking Age. Our ancient DNA analysis also revealed that a Viking expedition included close family members. By comparing with modern populations, we find that pigmentation-associated loci have undergone strong population differentiation during the past millennium, and trace positively selected loci—including the lactase-persistence allele of LCT and alleles of ANKA that are associated with the immune response—in detail. We conclude that the Viking diaspora was characterized by substantial transregional engagement: distinct populations influenced the genomic makeup of different regions of Europe, and Scandinavia experienced increased contact with the rest of the continent.
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| 4. |
- Meier, H. E. M., et al.
(författare)
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Ventilation of the Baltic Sea deep water: A brief review of present knowledge from observations and models
- 2006
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Ingår i: Oceanologia. - 0078-3234. ; 48, s. 133-164
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Tidskriftsartikel (refereegranskat)abstract
- The ventilation of the Baltic Sea deep water is driven by either gale-forced barotropic or baroclinic salt water inflows. During the past two decades, the frequency of large barotropic inflows (mainly in winter) has decreased and the frequency of medium-intensity baroclinic inflows (observed in summer) has increased. As a result of entrainment of ambient oxygen-rich water, summer inflows are also important for the deep water ventilation. Recent process studies of salt water plumes suggest that the entrainment rates are generally smaller than those predicted by earlier entrainment models. In addition to the entrance area, the Slupsk Sill and the Slupsk Furrow are important locations for the transformation of water masses. Passing the Slupsk Furrow, both gravity-driven dense bottom flows and sub-surface cyclonic eddies, which are eroded laterally by thermohaline intrusions, ventilate the deep water of the eastern Gotland Basin. A recent study of the energy transfer from barotropic to baroclinic wave motion using a two-dimensional shallow water model suggests that about 30% of the energy needed below the halocline for deep water mixing is explained by the breaking of internal waves. In the deep water decade-long stagnation periods with decreasing oxygen and increasing hydrogen sulphide concentrations might be caused by anomalously large freshwater inflows and anomalously high mean zonal wind speeds. In different studies the typical response time scale of average salinity was estimated to be between approximately 20 and 30 years. The review summarizes recent research results and ends with a list of open questions and recommendations.
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| 5. |
- Arneborg, Lars, 1969, et al.
(författare)
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Spatial variability of diapycnal mixing and turbulent dissipation rates in a stagnant fjord basin
- 2004
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Ingår i: Journal of Physical Oceanography. - 0022-3670. ; 34:7, s. 1679-1691
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Tidskriftsartikel (refereegranskat)abstract
- Two microstructure profilers, two ships, and four moorings with acoustic Doppler current profilers and conductivity-temperature loggers were used in an intensive effort to map the spatial and temporal variations of vertical mixing in the stagnant deep basin of Gullmar Fjord, Sweden. During three days in the beginning of August 2001 a continuous time series of turbulent kinetic energy dissipation profiles was obtained with one microstructure profiler at a fixed position near the deepest part of the fjord. During the same period the other microstructure profiler was used to obtain six sections of dissipation through the length of the basin. Two moorings were deployed in the fjord basin for one month from the end of July to the end of August. The mapping of dissipation rates reveals that the dissipation in the deep basin is confined to areas just inside the sill. More than 77% of the dissipation in the fjord basin happens above the sloping bottoms closest to the sill.
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| 6. |
- Burchard, H., et al.
(författare)
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Dynamics of medium-intensity dense water plumes in the Arkona Basin, Western Baltic Sea
- 2005
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Ingår i: Ocean Dynamics. - : Springer Science and Business Media LLC. - 1616-7341 .- 1616-7228. ; 55:5-6, s. 391-402
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Tidskriftsartikel (refereegranskat)abstract
- In this study, the dynamics of medium-intensity inflow events over Drogden Sill into the Arkona Sea are investigated. Idealised model simulations carried out with the General Estuarine Transport Model suggest that most of the salt transport during such inflow events occur north of Kriegers Flak, a shoal with less than 20 in water depth Surrounded by water depths of more than 40 in. This assumption about the pathway is supported by recent ship-based observations in the Arkona Sea during a medium-intensity inflow event. The propagation of a saline bottom plume could be observed during several days after having passed Drogden Sill. In the area north of Kriegers Flak the plume was about 10 m thick, and propagated with more than 0.5 m s(-1) and a salinity of tip to 20 psu (with ambient water salinity being 8 psu) eastwards. Although the model simulations were idealised, the Structural agreement between the observation and model result was good, The structure and pathways of these medium-intensity inflow events are of specific interest due to the plans for erecting extensive offshore wind farms in the Arkona Sea which may under certain circumstances lead to increased entrainment of ambient water into the bottom Plumes.
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| 7. |
- Olofsson, Malin, et al.
(författare)
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Nitrate and ammonium fluxes to diatoms and dinoflagellates at a single cell level in mixed field communities in the sea
- 2019
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Ingår i: Scientific Reports. - : Springer Science and Business Media LLC. - 2045-2322. ; 9:1
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Tidskriftsartikel (refereegranskat)abstract
- Growth of large phytoplankton is considered to be diffusion limited at low nutrient concentrations, yet their constraints and contributions to carbon (C) and nitrogen fluxes in field plankton communities are poorly quantified under this condition. Using secondary ion mass spectrometry (SIMS), we quantified cell-specific assimilation rates of C, nitrate, and ammonium in summer communities of large phytoplankton when dissolved inorganic nitrogen concentrations are low in temperate coastal regions. Chain-forming diatoms composed 6% of total particulate organic carbon, but contributed 20% of C assimilation, 54% of nitrate assimilation and 32% of ammonium assimilation within the plankton community. In contrast, large dinoflagellates composed 11% of total POC, and contributed 14% of the C assimilation, 4% of ammonium and 9% of nitrate assimilation within the plankton community. Measured cell-specific C and nitrate assimilation rate match the Redfield ratio and the maximal nitrate assimilation in Chaetoceros spp. predicted by mass transfer theory. However, average ammonium assimilation rates were 30 and 340% higher than predicted by mass transfer theory in Tripos/Ceratium and Chaetoceros, respectively, suggesting that microbial interactions in the phycosphere may facilitate substantial luxury ammonium uptake by Chaetoceros in environments with fluctuating nitrate concentrations.
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| 8. |
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| 9. |
- Wahlstrom, I., et al.
(författare)
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Projected climate change impact on a coastal sea-As significant as all current pressures combined
- 2022
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Ingår i: Global Change Biology. - : Wiley. - 1354-1013 .- 1365-2486. ; 28:17, s. 5310-5319
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Tidskriftsartikel (refereegranskat)abstract
- Climate change influences the ocean's physical and biogeochemical conditions, causing additional pressures on marine environments and ecosystems, now and in the future. Such changes occur in environments that already today suffer under pressures from, for example, eutrophication, pollution, shipping, and more. We demonstrate how to implement climate change into regional marine spatial planning by introducing data of future temperature, salinity, and sea ice cover from regional ocean climate model projections to an existing cumulative impact model. This makes it possible to assess climate change impact in relation to pre-existing cumulative impact from current human activities. Results indicate that end-of-century projected climate change alone is a threat of the same magnitude as the combination of all current pressures to the marine environment. These findings give marine planners and policymakers forewarning on how future climate change may impact marine ecosystems, across space, emission scenarios, and in relation to other pressures.
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