| 1. |
- Stella, Roberto, et al.
(författare)
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Relative Quantification of Membrane Proteins in Wild-Type and Prion Protein (PrP)-Knockout Cerebellar Granule Neurons
- 2012
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Ingår i: Journal of Proteome Research. - : American Chemical Society (ACS). - 1535-3893 .- 1535-3907. ; 11:2, s. 523-536
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Tidskriftsartikel (refereegranskat)abstract
- Approximately 25% of eukaryotic proteins possessing homology to at least two trans membrane domains are predicted to be embedded in biological membranes. Nevertheless, this group of proteins is not usually well represented in proteome-wide experiments due to their refractory nature. Here we present a quantitative mass spectrometry-based comparison of membrane protein expression in cerebellar granule neurons grown in primary culture that were isolated from wild-type mice and mice lacking the cellular prion protein. This protein is a cell-surface glycoprotein that is mainly expressed in the central nervous system and is involved in several neurodegenerative disorders, though its physiological role is unclear. We used a low specificity enzyme a-chymotrypsin to digest membrane proteins preparations that had been separated by SDS-PAGE. The resulting peptides were labeled with tandem mass tags and analyzed by MS. The differentially expressed proteins identified using this approach were further analyzed by multiple reaction monitoring to confirm the expression level changes.
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| 2. |
- Bendz, Anna, 1967, et al.
(författare)
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Convince with facts: Information effects on attitudes to the sickness insurance in Sweden
- 2024
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Ingår i: Scandinavian Political Studies. - 0080-6757 .- 1467-9477. ; 47:1, s. 1-22
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Tidskriftsartikel (refereegranskat)abstract
- Does factual information matter for policy evaluations and attitudes? Previous research has provided different, and partly contradictive, replies to this question. To test the effect of concrete facts on attitudes, we provide findings from a survey web-experiment concerning satisfaction with the universal sickness insurance. The treatments in the experiment are short facts from official reports on how the insurance actually work and is used. Our dependent variables are general satisfaction with how the insurance works, as well as trust for the responsible agency administering the insurance and more specified perceptions on capacity, precision, and fairness of the insurance. The results show that under certain circumstances, policy-specific information does have an effect – even though the effects are not consistent. Effects of the information were mainly found on general evaluations of the sickness insurance rather than on specific attitudes. Furthermore, we conclude that, contrary to expectations, the effects were not conditional on left–right position, subjective knowledge, political interest, or proximity.
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| 3. |
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| 4. |
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| 5. |
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| 6. |
- Bendz, Anna, 1967, et al.
(författare)
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The welfare reality check: how policy-specific information influences public responsiveness
- 2022
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Ingår i: Journal of Elections, Public Opinion and Parties. - : Informa UK Limited. - 1745-7289 .- 1745-7297. ; 32:3, s. 615-634
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Tidskriftsartikel (refereegranskat)abstract
- © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. Democratic responsiveness implies that politicians are expected to be responsive to public demands and needs but also that the public is expected to respond to actual policies and reforms by adjusting their demands. What is often over-looked is that policy-specific knowledge is imperative for public policy responsiveness to send correct signals. By using survey experiments, we tested the effects of policy-specific information on policy preferences for privatization of welfare services in Sweden. In line with the thermostatic model, we expected information on the increase of privatization to show negative correlations with demand for more privatization. The experiments showed that policy preferences changed in most policy areas when policy-specific facts were provided. The negative effects of information about privatization were most pronounced among centre-left respondents, increasing the left-right polarization. The results suggest that policy-specific knowledge can serve as a useful mechanism in order to meet the identified theoretical need to strengthen the causal relationship in theories of public responsiveness. The study adds important knowledge to how we understand public responsiveness, and highlight the need of “reality checks” when analysing policy demands.
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| 7. |
- Bendz, Maria, et al.
(författare)
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Membrane protein shaving with thermolysin can be used to evaluate topology predictors
- 2013
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Ingår i: Proteomics. - : Wiley. - 1615-9853 .- 1615-9861. ; 13:9, s. 1467-1480
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Tidskriftsartikel (refereegranskat)abstract
- Topology analysis of membrane proteins can be obtained by enzymatic shaving in combination with MS identification of peptides. Ideally, such analysis could provide quite detailed information about the membrane spanning regions. Here, we examine the ability of some shaving enzymes to provide large-scale analysis of membrane proteome topologies. To compare different shaving enzymes, we first analyzed the detected peptides from two over-expressed proteins. Second, we analyzed the peptides from non-over-expressed Escherichia coli membrane proteins with known structure to evaluate the shaving methods. Finally, the identified peptides were used to test the accuracy of a number of topology predictors. At the end we suggest that the usage of thermolysin, an enzyme working at the natural pH of the cell for membrane shaving, is superior because: (i) we detect a similar number of peptides and proteins using thermolysin and trypsin; (ii) thermolysin shaving can be run at a natural pH and (iii) the incubation time is quite short. (iv) Fewer detected peptides from thermolysin shaving originate from the transmembrane regions. Using thermolysin shaving we can also provide a clear separation between the best and the less accurate topology predictors, indicating that using data from shaving can provide valuable information when developing new topology predictors.
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| 8. |
- Bendz, Maria, et al.
(författare)
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Quantification of Membrane Proteins Using Nonspecific Protease Digestions
- 2009
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Ingår i: Journal of Proteome Research. - : American Chemical Society (ACS). - 1535-3893 .- 1535-3907. ; 8:12, s. 5666-5673
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Tidskriftsartikel (refereegranskat)abstract
- We present a mass spectrometry-based method for the identification and quantification of membrane proteins using the low-specificity protease Proteinase K, at very high pH, to digest proteins isolated by a modified SDS-PAGE protocol. The resulting peptides are modified with a fragmentation-directing isotope labeled tag. We apply the method to quantify differences in membrane protein expression of Bacillus subtilis grown in the presence or absence of glucose.
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| 9. |
- Brundin, Lena, et al.
(författare)
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Cocaine and amphetamine regulated transcript (CART) in suicide attempters.
- 2008
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Ingår i: Psychiatry Research. - : Elsevier BV. - 1872-7123 .- 0165-1781. ; 158:2, s. 117-122
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Tidskriftsartikel (refereegranskat)abstract
- Cocaine and amphetamine regulated transcript (CART) is a neuropeptide expressed in brain regions thought to regulate anxiety levels, depression, addiction and energy homeostasis. Individuals with a CART mutation display increased anxiety and depression. Severe anxiety is a core phenomenon of suicidality. We therefore studied levels of CART in the cerebrospinal fluid (CSF) of 98 patients with different psychiatric diagnoses, shortly after a suicide attempt. We also investigated the relationship between CSF-CART and relevant psychiatric symptoms. CART levels were determined using a radioimmunoassay and the psychiatric symptoms rated in structured interviews using the Comprehensive Psychopathological Rating Scale (CPRS) and the Karolinska Scales of Personality (KSP). No differences in CSF-CART were found between the diagnostic groups or controls. However, lower CART levels were associated with a higher degree of concentration difficulties. No significant association was found between CART levels and other psychiatric symptoms. CSF-CART correlated significantly with CSF-levels of orexin, but not with corticotrophin releasing factor (CRF). Further studies on the role of CART in psychiatric diseases where concentration difficulties are prominent, such as attention deficit disorder, are warranted.
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| 10. |
- Brundin, Lena, et al.
(författare)
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Increased orexin levels in the cerebrospinal fluid the first year after a suicide attempt.
- 2009
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Ingår i: Journal of Affective Disorders. - : Elsevier BV. - 1573-2517 .- 0165-0327. ; Jun 2, s. 179-182
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Tidskriftsartikel (refereegranskat)abstract
- BACKGROUND: The orexins (hypocretins) and cocaine and amphetamine regulated transcript (CART) are hypothalamic peptides involved in the regulation of sleep and appetite. We have previously shown that levels of both orexin-A and CART in the cerebrospinal fluid (CSF) are related to specific psychiatric symptoms. METHODS: Ten patients took part in lumbar punctures and psychiatric evaluations in conjunction to a suicide attempt and after 6 and 12 months. We measured CSF-orexin and CART using radioimmunoassays. RESULTS: Mean CSF-orexin was significantly higher at the first and second follow-up than at the suicide attempt. In contrast, mean CSF-CART did not differ over time. Total SUAS scores, as well as ratings of CPRS item 66 (global illness) were significantly lower at follow-up. At one year, there was a significant negative correlation between the change in CSF-orexin and the change in total SUAS score. LIMITATIONS: The number of patients who participated was relatively small. CONCLUSIONS: Our results support the hypothesis that orexin is involved in psychiatric symptomatology.
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| 11. |
- Brundin, Lena, et al.
(författare)
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Orexin and psychiatric symptoms in suicide attempters.
- 2007
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Ingår i: Journal of Affective Disorders. - : Elsevier BV. - 1573-2517 .- 0165-0327. ; 100:1-3, s. 259-263
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Tidskriftsartikel (refereegranskat)abstract
- BACKGROUND: The orexins (hypocretins) are recently discovered hypothalamic peptides that are involved in the regulation of sleep, appetite and state of arousal. In the present study, we investigated the relationship between cerebrospinal fluid (CSF) orexin and specific psychiatric symptoms in suicidal patients. METHODS: A total of 101 patients were enrolled in the study shortly after a suicide attempt. All patients underwent a lumbar puncture after a wash-out period during which they did not receive any antipsychotic or antidepressive medication. Structured interviews were performed using the Comprehensive Psychopathological Rating Scale (CPRS). CSF-orexin-A was measured and correlated with ratings of psychiatric symptoms. RESULTS: There were significant and negative correlations between CSF-orexin and the symptoms lassitude (difficulty to initiate activities) and slowness of movement, as well as the ratings of global illness (p<0.005 for all three items, Spearman's rho). LIMITATIONS: Correlation analysis is an indirect method of investigation and does not demonstrate causal relationships. CONCLUSION: Low CSF-orexin levels are related to pronounced symptoms of inertia and reduced motor activity in suicidal patients. Interestingly, the lower the orexin levels, the higher were ratings of overall illness, as observed by a specialist in psychiatry. Our results suggest that reduced orexin levels are involved in the etiology of specific psychiatric symptoms.
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| 12. |
- Brundin, Lena, et al.
(författare)
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Reduced orexin levels in the cerebrospinal fluid of suicidal patients with major depressive disorder.
- 2007
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Ingår i: European Neuropsychopharmacology. - : Elsevier BV. - 1873-7862 .- 0924-977X. ; 17:Mar 6, s. 573-579
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Tidskriftsartikel (refereegranskat)abstract
- Orexins are neuropeptides selectively expressed in a small number of neurons in the lateral–posterior hypothalamus. We measured orexin-A in the cerebrospinal fluid (CSF) of 66 patients with major depressive disorder (MDD), dysthymia and adjustment disorder after a suicide attempt. Blood samples confirmed that the patients were free from antidepressive and neuroleptic medication at the time of the lumbar punctures. CSF levels of orexin-A were significantly lower in patients with MDD than in patients with adjustment disorder and dysthymia. Orexin correlated significantly with CSF levels of somatostatin, delta sleep inducing peptide-like immunoreactivity (DSIP-LI) and corticotrophin releasing factor (CRF), but not with leptin or vasopressin. Plasma levels of thyroid-stimulating hormone (TSH) were not reduced in MDD patients, and did not correlate with CSF-orexin. Our results suggest that suicidal patients with MDD have distinct neurobiological features, involving compromised levels of hypothalamic peptides regulating the state of arousal.
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| 13. |
- Carlsson, Christel, et al.
(författare)
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Transport av kemiska bekämpningsmedel samt fastläggnings- och nedbrytningskarakterisering i en vertikal transekt genom mark- och grundvattenzonen i Vemmenhögs tillrinningsområde, södra Sverige
- 2013
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Rapport (övrigt vetenskapligt/konstnärligt)abstract
- Projektets mål har varit att undersöka förekomst, fastläggning, transport och nedbrytning av kemiska bekämpningsmedel (KB) i djupare grundvatten i ett litet avrinningsområde i Vemmenhög i Skåne. Inom ramen för studien har grundvatten provtagits på varierande djup (5,5-35 m) och analyserats med avseende på 150 olika KB vid fem olika tillfällen utan att några detekterats (undantaget ett enstaka fynd av AMPA). Dessa djupare grundvatten daterades till mellan 40 och >60 år. I grunt grundvatten från området finns fynd av KB och med hjälp av statistisk analys av spridningsdata och data över fynd visades att den enskilt största faktorn som avgör om KB återfinns i grundvattnet eller ej är dosen vid besprutningstillfället. En högre dos ökar sannolikheten för fynd i grundvattnet. En matematisk modellering har genomförts för att förklara förekomst av 6 olika KB i grunt grundvatten. För modelleringen användes bl.a. experimentellt bestämda parametrar för nedbrytning och fastläggning. Modelleringen möjliggjorde att fynd av lågsorberande KB kunde kopplas till spridningen av dessa substanser, medan fynd av de relativt starkt sorberande substanserna inte kunde förklaras.
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| 14. |
- Cifani, Paolo, et al.
(författare)
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Hunting for Protein Markers of Hypoxia by Combining Plasma Membrane Enrichment with a New Approach to Membrane Protein Analysis
- 2011
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Ingår i: Journal of Proteome Research. - : American Chemical Society (ACS). - 1535-3893 .- 1535-3907. ; 10:4, s. 1645-1656
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Tidskriftsartikel (refereegranskat)abstract
- Nontransient hypoxia is strongly associated with malignant lesions, resulting in aggressive behavior and resistance to treatment. We present an analysis of mRNA and protein expression changes in neuroblastoma cell lines occurring upon the transition from normoxia to hypoxia. The correlation between mRNA and protein level changes was poor, although some known hypoxia-driven genes and proteins correlated well. We present previously undescribed membrane proteins expressed under hypoxic conditions that are candidates for evaluation as biomarkers.
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| 15. |
- Göransson, Gunnel, et al.
(författare)
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Mass transport of contaminated soil released into surface water by landslides (Göta River, SW Sweden)
- 2012
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Ingår i: Hydrology and Earth System Sciences. - : Copernicus GmbH. - 1607-7938. ; 16:7, s. 1879-1893
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Tidskriftsartikel (refereegranskat)abstract
- Landslides of contaminated soil into surface water represent an overlooked exposure pathway that has not been addressed properly in existing risk analysis for landslide hazard, contaminated land, or river basin management. A landslide of contaminated soil into surface water implies an instantaneous exposure of the water to the soil, dramatically changing the prerequisites for the mobilisation and transport of pollutants. In this study, an analytical approach is taken to simulate the transport of suspended matter released in connection with landslides into rivers. Different analytical solutions to the advection-dispersion equation (ADE) were tested against the measured data from the shallow rotational, retrogressive landslide in clayey sediments that took place in 1993 on the Göta River, SW Sweden. The landslide encompassed three distinct events, namely an initial submerged slide, followed by a main slide, and a retrogressive slide. These slides generated three distinct and non-Gaussian peaks in the online turbidity recordings at the freshwater intake downstream the slide area. To our knowledge, this registration of the impact on a river of the sediment release from a landslide is one of few of its kind in the world and unique for Sweden. Considering the low frequency of such events, the data from this landslide are highly useful for evaluating how appropriate the ADE is to describe the effects of landslides into surface water. The results yielded realistic predictions of the measured variation in suspended particle matter (SPM) concentration, after proper calibration. For the three individual slides it was estimated that a total of about 0.6% of the total landslide mass went into suspension and was transported downstream. This release corresponds to about 1 to 2% of the annual suspended sediment transport for that river stretch. The studied landslide partly involved an industrial area, and by applying the analytical solution to estimate the transport of metals in the sediments, it was found that landslides may release a significant amount of pollutants if large contaminated areas are involved. However, further studies are needed to develop more detailed descriptions of the transport processes. There is also a need to increase the knowledge on possible environmental consequences in the near and far field, in a short- and long-time perspective. In summary, the release of pollutants should not be neglected in landslide risk assessments.
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| 16. |
- Kreuger, Jenny, et al.
(författare)
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Modelling pesticide transport in a shallow groundwater catchment using tritium and helium-3 data
- 2014
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Ingår i: Applied Geochemistry. - : Elsevier BV. - 0883-2927. ; 50, s. 231-239
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Tidskriftsartikel (refereegranskat)abstract
- Using tritium and helium-3 data for calibration, a 2-D transport model was set up to explain the occurrence of bentazone, dichlorprop, glyphosate, isoproturon, MCPA and metamitron in a small groundwater catchment in southern Sweden. The model was parameterised with site-specific degradation and sorption data to enable transport simulations. Local climatological data and a 21-year record of agricultural pesticide use within the study area were used as boundary conditions. Model output was evaluated against a 7-year long pesticide monitoring data-series from two monitoring wells within the study area. The model successfully predicts observed breakthrough of bentazone, dichlorprop, isoproturon and MCPA. However, it fails to simulate observed occurrences of glyphosate and metamitron. Glyphosate and metamitron exhibit relatively high sorption potential, and their occurrence is suggested to be the result of non-equilibrium preferential flow paths which the model cannot reproduce due the conceptualisation of the system as homogenous and isotropic. The results indicate a promising methodological approach applicable to groundwater contamination risk assessment, and demonstrate the potential for transport model calibration by means of tritium and helium-3 data. Main constraints of the study relate to the relatively simple system conceptualisation, indicating a need for further consideration of physical and chemical heterogeneity. (C) 2014 Elsevier Ltd. All rights reserved.
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| 17. |
- Lindqvist, Daniel, et al.
(författare)
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Interleukin-6 Is Elevated in the Cerebrospinal Fluid of Suicide Attempters and Related to Symptom Severity
- 2009
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Ingår i: BIOLOGICAL PSYCHIATRY. - : Elsevier BV. - 0006-3223 .- 1873-2402. ; 66:3, s. 287-292
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Tidskriftsartikel (refereegranskat)abstract
- Background: Depressive disorders are associated with immune system alterations that can be detected in the blood. Cytokine concentrations in cerebrospinal fluid (CSF) and their relationship to aspects of suicidality have previously not been investigated. Methods: We measured interleukin-1 beta interleukin-6 (IL-6), interleukin-8, and tumor necrosis factor-a (TNF-alpha) in CSF and plasma of suicide attempters (n = 63) and healthy control subjects (n = 47). Patients were classified according to diagnosis and violent or nonviolent suicide attempt. We evaluated suicidal ideation and depressive symptoms using the Suicide Assessment Scale and the Montgomery-Asberg Depression Rating Scale (MADRS). We also analyzed the relation between cytokines and monoamine metabolites 5-hydroxyindoleacetic acid (5-HIAA), homovanillic acid (HVA), and 3-methoxy-4-hydroxyphenylglycol (MHPG) in CSF, as well as the integrity of the blood-brain barrier as reflected by the CSF:serum albumin ratio. Results: IL-6 in CSF was significantly higher in suicide attempters than in healthy control subjects. Patients who performed violent suicide attempts displayed the highest IL-6. Furthermore, there was a significant positive correlation between MANS scores and CSF IL-6 levels in all patients. IL-6 and TNF-a correlated significantly with 5-HIAA and HVA in CSF, but not with MHPG. Cytokine levels in plasma and CSF were not associated, and patients with increased blood-brain barrier permeability did not exhibit elevated cytokine levels. Conclusions: We propose a role for CSF IL-6 in the symptomatology of suicidal behavior, possibly through mechanisms involving alterations of dopamine and serotonin metabolism.
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