| 1. |
- Kattge, Jens, et al.
(författare)
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TRY plant trait database - enhanced coverage and open access
- 2020
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Ingår i: Global Change Biology. - : Wiley-Blackwell. - 1354-1013 .- 1365-2486. ; 26:1, s. 119-188
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Tidskriftsartikel (refereegranskat)abstract
- Plant traits-the morphological, anatomical, physiological, biochemical and phenological characteristics of plants-determine how plants respond to environmental factors, affect other trophic levels, and influence ecosystem properties and their benefits and detriments to people. Plant trait data thus represent the basis for a vast area of research spanning from evolutionary biology, community and functional ecology, to biodiversity conservation, ecosystem and landscape management, restoration, biogeography and earth system modelling. Since its foundation in 2007, the TRY database of plant traits has grown continuously. It now provides unprecedented data coverage under an open access data policy and is the main plant trait database used by the research community worldwide. Increasingly, the TRY database also supports new frontiers of trait-based plant research, including the identification of data gaps and the subsequent mobilization or measurement of new data. To support this development, in this article we evaluate the extent of the trait data compiled in TRY and analyse emerging patterns of data coverage and representativeness. Best species coverage is achieved for categorical traits-almost complete coverage for 'plant growth form'. However, most traits relevant for ecology and vegetation modelling are characterized by continuous intraspecific variation and trait-environmental relationships. These traits have to be measured on individual plants in their respective environment. Despite unprecedented data coverage, we observe a humbling lack of completeness and representativeness of these continuous traits in many aspects. We, therefore, conclude that reducing data gaps and biases in the TRY database remains a key challenge and requires a coordinated approach to data mobilization and trait measurements. This can only be achieved in collaboration with other initiatives.
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| 2. |
- Berner, Simon, et al.
(författare)
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Activity boost of a biomimetic oxidation catalyst by immobilization onto a gold surface
- 2006
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Ingår i: Journal of Catalysis. - : Elsevier BV. - 0021-9517 .- 1090-2694. ; 244:1, s. 86-91
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Tidskriftsartikel (refereegranskat)abstract
- Thiol-functionalized cobalt porphyrins were used as a model system for investigating catalytic activity in homogeneous and heterogeneous oxidation catalysis. Self-assemble monolayers of thiol-functionalized cobalt porphyrins were prepared on a gold surface and served as heterogenous catalysts. These immoblilized molecules prevented the strong inactivation observed for their homogeneous congener. As a result, the turnover number per molecule in heterogeneous catalysis was at least 100 times higher than that of the corresponding homogeneous catalyst. It is atypical for a heterogenized catalyst to outperform its homogeneous congener. The properties of the molecular layers were characterized on the molecular level by means of X-ray photoelectorn spectroscopy (XPS) and scanning tunneling microscopy (STM). The results demonstrate that the performance of these biomimetic catalysts can be dramatically improved if the catalyst arangement can be controlled on the molecular level.
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| 3. |
- Berner, Simon, et al.
(författare)
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Electronic and structural studies of immobilized thiol-derivatized cobalt porphyrins on gold surfaces
- 2007
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Ingår i: Applied Surface Science. - : Elsevier BV. - 0169-4332 .- 1873-5584. ; 253:18, s. 7540-7548
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Tidskriftsartikel (refereegranskat)abstract
- The immobilisation of thiol-derivatized cobalt porphyrins on gold surfaces has been studied in detail by means of combined scanning tunnelling microscopy (STM) and X-ray photoelectron spectroscopy (XPS). S-thioacetyl has been used as a protective group for the thiol. Different routes for deprotection of the acetyl groups were performed in acidic and in basic conditions. The results show the formation of monolayer films for the different preparation schemes. The immobilisation of the molecules on the gold surface takes place through the thiol-linkers by the formation of multiple thiolate bonds. In the case of layers formed with protected porphyrins approximately 60% of the linkers are bonded to the gold surface whereas for deprotected layers the amount of bonded linkers is increased up to about 80%. STM measurements revealed that the molecules arrange in a disordered overlayer and do not exhibit mobility on the gold surface. Annealing experiments have been performed in order to test the stability of the porphyrin layers. Disordered patterns have been observed in the STM images after annealing at T = 400 °C. XPS revealed that the sulphur content disappeared completely after annealing at T = 180 °C and that the molecules did undergo significant modifications.
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| 4. |
- Éll, Alida H, et al.
(författare)
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Synthesis os S-Thioacetate Functionalized Cobalt(II) Porphyrins and Heterogenization on gold Surface
- 2006
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Ingår i: European Journal of Organic Chemistry. - : Wiley-VCH Verlagsgesellschaft. - 1434-193X .- 1099-0690. ; :5, s. 1193-1199
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Tidskriftsartikel (refereegranskat)abstract
- Cobalt tetraarylporphyrins 1-Co and 2-Co with thioacetate-functionalized carbon chains on the aryl groups were synthesized. The cobalt porphyrin 2-Co was immobilized on a gold surface after deprotection of the S-acetyl group. The immobilized porphyrin was studied by X-ray Photoelectron Spectroscopy (XPS) and the results suggest that a complete monolayer of porphyrins is formed.
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| 5. |
- Galli, Silvia, et al.
(författare)
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Chemically modified titanium-zirconium implants in comparison with commercially pure titanium controls stimulate the early molecular pathways of bone healing
- 2017
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Ingår i: Clinical Oral Implants Research. - : Blackwell Munksgaard. - 0905-7161 .- 1600-0501. ; 28:10, s. 1234-1240
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Tidskriftsartikel (refereegranskat)abstract
- OBJECTIVES: Titanium-zirconium (TiZr) has been proposed as a mechanically stronger alternative to commercially pure titanium for oral and orthopaedic implants. However, not much is known on the osseointegration kinetics of TiZr surfaces. In this study, we aimed to identify the genetic response of bone around TiZr implants compared to pure Ti. MATERIAL AND METHODS: Microtextured and hydrophilic TiZr implants (tests) and cpTi implants grade IV (controls) were placed in the tibia of 30 New Zealand white rabbits. At 2, 4 and 12 weeks, the implants were subjected to removal torque test (RTQ). The expression of a panel of genes involved in the process of osseointegration was measured in the bone around the test and control implants by means of quantitative real-time polymerase chain reaction (PCR) and compared to the control samples. RESULTS: The controls yielded statistically significant higher RTQ at 4 weeks, but the RTQ of the tests had a larger increase between 4 and 12 weeks, when both groups reached similar values. The gene expression analysis showed that all selected markers for bone formation, bone remodelling and cytokines were significantly upregulated around TiZr implants after 2 weeks. After 4 weeks of healing, two bone formation markers were significantly more expressed in the test samples, while at 12 weeks, the expression of all genes was similar in the two groups. CONCLUSIONS: TiZr implants showed comparable biomechanical outcomes to cpTi up to 12 weeks of healing. However, at early healing stages, they showed a significant upregulation of osteogenesis and osteoclastogenesis markers.
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| 6. |
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| 7. |
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| 8. |
- Ledung, Greger, et al.
(författare)
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The Performance of a Biomimetic Oxidation Catalyst Immobilised on Gold and Silica Substrates
- 2007
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Ingår i: International Symposium on Relations between Homogeneous and Heterogeneous Catalysis. ; , s. 180-
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Konferensbidrag (populärvet., debatt m.m.)abstract
- Thiol-functionalized cobalt porphyrins were used as a model system for investigating catalytic activity in homo-geneous and heterogeneous oxidation catalysis. Self-assembled monolayers of thiol-functionalized cobalt porphyrins were prepared on a gold surface and served as heterogeneous catalysts. The immobilization of the molecules prevented the strong inactivation observed for their homogeneous congener. As a result, the turnover number permolecule in heterogeneous catalysis was at least 100 times higher than that of the corresponding homogeneouscatalyst. It is atypical for a heterogenized catalyst to outperform its homogeneous congener. The properties of themolecular layers were characterized on the molecular level by means of X-ray photoelectron spectroscopy (XPS) and scanning probe microscopy (SPM). The results demonstrate that the performance of these biomimetic catalysts can be dramatically improved if the catalyst arrangement can be controlled on the molecular level. In order to further investigate the influence of the substrate on the catalytic performance, monolayers of the cobalt porphyrins were grafted onto silica surfaces. The observed catalytic activity together with the surface analytical results are interpreted in relation to the supporting substrate. Preliminary results from this investigation (silicon wafer) show that the catalytic activity is similar to that of gold substrates.
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| 9. |
- Nilson, Katharina, et al.
(författare)
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Rubidium Doped Metal-Free Phthalocyanine Monolayer Structures on Au(111)
- 2010
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Ingår i: The Journal of Physical Chemistry C. - : American Chemical Society (ACS). - 1932-7447 .- 1932-7455. ; 114:28, s. 12166-12172
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Tidskriftsartikel (refereegranskat)abstract
- Scanning tunneling microscopy (STM) studies of monolayer of metal-free phthalocyanine (H2Pc) adsorbed on Au(111) have shown ordered arrangement of the molecules on the surface. Evaporation of H2Pc onto the Au(111) surface and post annealing of the sample to 670 K results in a densely packed structure of the molecules. The monolayer is characterized by molecules adsorbed with the molecular plane parallel to the substrate surface in a square adsorption unit cell. Furthermore, the high resolution images revealed the orientation of individual molecules. The H2Pc/Au(111) system has also been doped by rubidum and compared to the undoped layers. The Rb affects the molecular adsorption geometry, and a hexagonal unit cell is found for the coadsorption of H2Pc and Rb. Upon doping, highly ordered Rb-induced protrusions are observed at the benzene site of adsorbed molecules.
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| 10. |
- Walton, Esther, et al.
(författare)
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Brain Structure in Acutely Underweight and Partially Weight-Restored Individuals With Anorexia Nervosa : A Coordinated Analysis by the ENIGMA Eating Disorders Working Group
- 2022
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Ingår i: Biological Psychiatry. - : Elsevier. - 0006-3223 .- 1873-2402. ; 92:9, s. 730-738
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Tidskriftsartikel (refereegranskat)abstract
- BACKGROUND: The pattern of structural brain abnormalities in anorexia nervosa (AN) is still not well understood. While several studies report substantial deficits in gray matter volume and cortical thickness in acutely underweight patients, others find no differences, or even increases in patients compared with healthy control subjects. Recent weight regain before scanning may explain some of this heterogeneity. To clarify the extent, magnitude, and de-pendencies of gray matter changes in AN, we conducted a prospective, coordinated meta-analysis of multicenter neuroimaging data.METHODS: We analyzed T1-weighted structural magnetic resonance imaging scans assessed with standardized methods from 685 female patients with AN and 963 female healthy control subjects across 22 sites worldwide. In addition to a case-control comparison, we conducted a 3-group analysis comparing healthy control subjects with acutely underweight AN patients (n = 466) and partially weight-restored patients in treatment (n = 251).RESULTS: In AN, reductions in cortical thickness, subcortical volumes, and, to a lesser extent, cortical surface area were sizable (Cohen's d up to 0.95), widespread, and colocalized with hub regions. Highlighting the effects of un-dernutrition, these deficits were associated with lower body mass index in the AN sample and were less pronounced in partially weight-restored patients.CONCLUSIONS: The effect sizes observed for cortical thickness deficits in acute AN are the largest of any psychiatric disorder investigated in the ENIGMA (Enhancing Neuro Imaging Genetics through Meta Analysis) Consortium to date. These results confirm the importance of considering weight loss and renutrition in biomedical research on AN and underscore the importance of treatment engagement to prevent potentially long-lasting structural brain changes in this population.
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| 11. |
- Wennerberg, Ann, et al.
(författare)
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Nanostructures and hydrophilicity influence osseointegration : a biomechanical study in the rabbit tibia
- 2014
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Ingår i: Clinical Oral Implants Research. - : Wiley-Blackwell. - 0905-7161 .- 1600-0501. ; 25:9, s. 1041-1050
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Tidskriftsartikel (refereegranskat)abstract
- ObjectiveImplant surface properties have long been identified as an important factor to promote osseointegration. The importance of nanostructures and hydrophilicity has recently been discussed. The aim of this study was to investigate how nanostructures and wettability influence osseointegration and to identify whether the wettability, the nanostructure or both in combination play the key role in improved osseointegration. Materials and MethodsTwenty-six adult rabbits each received two Ti grade 4 discs in each tibia. Four different types of surface modifications with different wettability and nanostructures were prepared: hydrophobic without nanostructures (SLA), with nanostructures (SLAnano); hydrophilic with two different nanostructure densities (low density: pmodSLA, high density: SLActive). All four groups were intended to have similar chemistry and microroughness. The surfaces were evaluated with contact angle measurements, X-ray photoelectron spectroscopy, scanning electron microscopy, atomic force microscopy and interferometry. After 4 and 8weeks healing time, pull-out tests were performed. ResultsSLA and SLAnano were hydrophobic, whereas SLActive and pmodSLA were super-hydrophilic. No nanostructures were present on the SLA surface, but the three other surface modifications clearly showed the presence of nanostructures, although more sparsely distributed on pmodSLA. The hydrophobic samples showed higher carbon contamination levels compared with the hydrophilic samples. After 4weeks healing time, SLActive implants showed the highest pull-out values, with significantly higher pull-out force than SLA and SLAnano. After 8weeks, the SLActive implants had the highest pull-out force, significantly higher than SLAnano and SLA. ConclusionsThe strongest bone response was achieved with a combination of wettability and the presence of nanostructures (SLActive).
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| 12. |
- Wennerberg, Ann, et al.
(författare)
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Spontaneously formed nanostructures on titanium surfaces.
- 2013
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Ingår i: Clinical Oral Implants Research. - : Wiley. - 0905-7161 .- 1600-0501. ; 24:2, s. 203-209
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Tidskriftsartikel (refereegranskat)abstract
- OBJECTIVES: The aim was to investigate the evolution of nanostructures on the SLActive surface, as a function of time, storage conditions, material dependence and to identify the step in which the reorganization of the outermost titanium oxide layer into well defined nanostructures takes place. MATERIAL AND METHODS: Titanium grade 2 discs were surface modified in seven different modes; (1) SLA (sand blasted, large grit, acid etched) protocol. (2) SLActive protocol (SLA stored in 0.9% NaCl solution), (3) SLActive, but stored in water instead of 0.9% NaCl solution, (4) pmod SLA: SLA discs subjected to oxygen plasma cleaning and stored in 0.9% NaCl solution, (5) SLAnano: SLActive discs aged for several months and then dried, (6) Mod A: same etching procedure and storage as for SLActive, but no sand blasting prior to etching, (7) pmod P: the discs were polished, oxygen plasma cleaned and stored in 0.9% NaCl solution. In addition TiZr alloy discs were prepared like the Ti SLActive samples. The surfaces were evaluated with SEM, interferometry, contact angle measurements and XPS. RESULTS: The samples stored dry were hydrophobic whereas the discs stored in liquid were hydrophilic. The evolution of nanostructures took 2 weeks, thereafter they were stable over time. The nanostructures occured after storage both in water and NaCl solution. Nanostructures were formed on Ti and TiZr although the morphology and distribution was quite different between the two materials. CONCLUSIONS: Acid etching in conjunction with storage in aqueous solution is responsible for the reorganization of the outermost titanium oxide layer into well defined nanostructures.
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| 13. |
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| 14. |
- Åhlund, John, et al.
(författare)
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The electronic structure of iron phthalocyanine probed by photoelectron and x-ray absorption spectroscopies and density functional theory calculations
- 2006
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Ingår i: Journal of Chemical Physics. - : AIP Publishing. - 0021-9606 .- 1089-7690. ; 125:3, s. 034709-1-034709-7
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Tidskriftsartikel (refereegranskat)abstract
- A joint experimental and theoretical work to explain the electronic and geometrical structure of an in situ prepared film of iron phthalocyanine (FePc) on silicon (100) is presented. FePc molecular films have been characterized by core and valence photoemission spectroscopy (PES) and x-ray absorption spectroscopy (XAS), and the results have been interpreted and simulated by density functional theory (DFT) calculations. C1s and N1s PE spectra have been analyzed by taking into account all chemically nonequivalent C and N atoms in the molecule. In the Fe2p(3/2) spectra it has been possible to resolve two components that can be related to the open shell structure of the molecule. By valence PES and N1s XAS data, the geometrical orientation of the FePc molecules in the film could be determined. Our results indicate that for the FePc on Si(100), the molecules within the film are mainly standing on the surface. The experimental N1s XAS spectra are very well reproduced by the theoretical calculations, which are both angle and atomic resolved, giving a detailed description of the electronic and geometric structure of the FePc film. Furthermore, the asymmetry and the intensity angle variation of the first N1s XAS threshold feature could be explained by the presented DFT calculations as due to the chemical nonequivalence of the N atoms and the symmetry character of the lowest unoccupied molecular orbital.
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