| 1. |
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| 2. |
- Kiemeney, Lambertus A, et al.
(författare)
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A sequence variant at 4p16.3 confers susceptibility to urinary bladder cancer.
- 2010
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Ingår i: Nature genetics. - : Springer Science and Business Media LLC. - 1546-1718 .- 1061-4036. ; 42:5, s. 415-9
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Tidskriftsartikel (refereegranskat)abstract
- Previously, we reported germline DNA variants associated with risk of urinary bladder cancer (UBC) in Dutch and Icelandic subjects. Here we expanded the Icelandic sample set and tested the top 20 markers from the combined analysis in several European case-control sample sets, with a total of 4,739 cases and 45,549 controls. The T allele of rs798766 on 4p16.3 was found to associate with UBC (odds ratio = 1.24, P = 9.9 x 10(-12)). rs798766 is located in an intron of TACC3, 70 kb from FGFR3, which often harbors activating somatic mutations in low-grade, noninvasive UBC. Notably, rs798766[T] shows stronger association with low-grade and low-stage UBC than with more aggressive forms of the disease and is associated with higher risk of recurrence in low-grade stage Ta tumors. The frequency of rs798766[T] is higher in Ta tumors that carry an activating mutation in FGFR3 than in Ta tumors with wild-type FGFR3. Our results show a link between germline variants, somatic mutations of FGFR3 and risk of UBC.
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| 3. |
- Laegsgaard, E, et al.
(författare)
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A high-pressure scanning tunneling microscope
- 2001
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Ingår i: Review of Scientific Instruments. - : AIP Publishing. - 0034-6748 .- 1089-7623. ; 72:9, s. 3537-3542
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Tidskriftsartikel (refereegranskat)abstract
- We present the design and performance of a high-pressure scanning tunneling microscope (HP-STM), which allows atom-resolved imaging of metal surfaces at pressures ranging from ultrahigh vacuum (UHV) to atmospheric pressures (1 x 10(-10)-1000 mbar) on a routine basis. The HP-STM is integrated in a gold-plated high-pressure cell with a volume of only similar to0.5 l, which is attached directly to an UHV preparation/analysis chamber. The latter facilitates quick sample transfer between the UHV chamber and the high-pressure cell, and allows for in situ chemical and structural analysis by a number of analytical UHV techniques incorporated in the UHV chamber. Reactant gases are admitted to the high-pressure cell via a dedicated gas handling system, which includes several stages of gas purification. The use of ultrapure gasses is essential when working at high pressures in order to achieve well-defined experimental conditions. The latter is demonstrated in the case of H/Cu(110) at atmospheric H-2 pressures where impurity-related structures were observed. (C) 2001 American Institute of Physics.
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| 4. |
- Li, W X, et al.
(författare)
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Oxidation of Pt(110)
- 2004
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Ingår i: Physical Review Letters. - 0031-9007 .- 1079-7114. ; 93:14, s. 146104-
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Tidskriftsartikel (refereegranskat)abstract
- Using scanning tunneling microscopy and temperature programed desorption we investigate the Pt(110) surface under strongly oxidizing conditions involving either high-pressure O-2 or atomic oxygen exposure. At low temperatures, only disordered Pt oxide structures are observed. After annealing ordered surface oxide islands are observed to coexist with a highly stable reconstructed (12x2)-O chemisorption structure. From density functional theory calculations a model for the surface oxide phase is revealed. The phase is found to be metastable, and its presence is explained in terms of stabilizing defects in the chemisorption layer and reduced Pt mobility.
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| 5. |
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| 6. |
- Pedersen, M O, et al.
(författare)
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Diffusion of N adatoms on the Fe(100) surface
- 2000
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Ingår i: Physical Review Letters. - 0031-9007 .- 1079-7114. ; 84:21, s. 4898-4901
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Tidskriftsartikel (refereegranskat)abstract
- The diffusion of individual N adatoms on Fe(100) has been studied using scanning tunneling microscopy and ab initio density functional theory (DFT) calculations. The measured diffusion barrier for isolated N adatoms is E-d = (0.92 +/- 0.04) eV, with a prefactor of nu(0) = 4.3 x 10(12) s(-1), which is in quantitative agreement with the DFT calculations. Thr; diffusion is strongly coupled to lattice distortions. and. as a consequence, the presence of other N adatoms introduces an anisotropy in the diffusion. Based on experimentally determined values of the diffusion barriers and adsorbate-adsorbate: interactions, the potential energy surface experienced by a N adatom is determined.
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| 7. |
- Rasmussen, Morten K., et al.
(författare)
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Stable Cation Inversion at the MgAl2O4(100) Surface
- 2011
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Ingår i: Physical Review Letters. - 1079-7114. ; 107:3
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Tidskriftsartikel (refereegranskat)abstract
- From an interplay of atom-resolved noncontact atomic force microscopy, surface x-ray diffraction experiments, and density functional theory calculations, we reveal the detailed atomic-scale structure of the (100) surface of an insulating ternary metal oxide, MgAl2O4 (spinel). We surprisingly find that the MgAl2O4(100) surface is terminated by an Al and O-rich structure with a thermodynamically favored amount of Al atoms interchanged with Mg. This finding implies that so-called Mg-Al antisites, which are defects in the bulk of MgAl2O4, become a thermodynamically stable and integral part of the surface.
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| 8. |
- Rothman, Nathaniel, et al.
(författare)
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A multi-stage genome-wide association study of bladder cancer identifies multiple susceptibility loci
- 2010
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Ingår i: Nature Genetics. - : Springer Science and Business Media LLC. - 1061-4036 .- 1546-1718. ; 42:11, s. 978-984
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Tidskriftsartikel (refereegranskat)abstract
- We conducted a multi-stage, genome-wide association study of bladder cancer with a primary scan of 591,637 SNPs in 3,532 affected individuals (cases) and 5,120 controls of European descent from five studies followed by a replication strategy, which included 8,382 cases and 48,275 controls from 16 studies. In a combined analysis, we identified three new regions associated with bladder cancer on chromosomes 22q13.1, 19q12 and 2q37.1: rs1014971, (P = 8 × 10⁻¹²) maps to a non-genic region of chromosome 22q13.1, rs8102137 (P = 2 × 10⁻¹¹) on 19q12 maps to CCNE1 and rs11892031 (P = 1 × 10⁻⁷) maps to the UGT1A cluster on 2q37.1. We confirmed four previously identified genome-wide associations on chromosomes 3q28, 4p16.3, 8q24.21 and 8q24.3, validated previous candidate associations for the GSTM1 deletion (P = 4 × 10⁻¹¹) and a tag SNP for NAT2 acetylation status (P = 4 × 10⁻¹¹), and found interactions with smoking in both regions. Our findings on common variants associated with bladder cancer risk should provide new insights into the mechanisms of carcinogenesis.
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| 9. |
- Stacey, Simon N, et al.
(författare)
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Ancestry-shift refinement mapping of the C6orf97-ESR1 breast cancer susceptibility locus.
- 2010
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Ingår i: PLoS genetics. - : Public Library of Science. - 1553-7404. ; 6:7, s. e1001029-
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Tidskriftsartikel (refereegranskat)abstract
- We used an approach that we term ancestry-shift refinement mapping to investigate an association, originally discovered in a GWAS of a Chinese population, between rs2046210[T] and breast cancer susceptibility. The locus is on 6q25.1 in proximity to the C6orf97 and estrogen receptor alpha (ESR1) genes. We identified a panel of SNPs that are correlated with rs2046210 in Chinese, but not necessarily so in other ancestral populations, and genotyped them in breast cancer case:control samples of Asian, European, and African origin, a total of 10,176 cases and 13,286 controls. We found that rs2046210[T] does not confer substantial risk of breast cancer in Europeans and Africans (OR = 1.04, P = 0.099, and OR = 0.98, P = 0.77, respectively). Rather, in those ancestries, an association signal arises from a group of less common SNPs typified by rs9397435. The rs9397435[G] allele was found to confer risk of breast cancer in European (OR = 1.15, P = 1.2 x 10(-3)), African (OR = 1.35, P = 0.014), and Asian (OR = 1.23, P = 2.9 x 10(-4)) population samples. Combined over all ancestries, the OR was 1.19 (P = 3.9 x 10(-7)), was without significant heterogeneity between ancestries (P(het) = 0.36) and the SNP fully accounted for the association signal in each ancestry. Haplotypes bearing rs9397435[G] are well tagged by rs2046210[T] only in Asians. The rs9397435[G] allele showed associations with both estrogen receptor positive and estrogen receptor negative breast cancer. Using early-draft data from the 1,000 Genomes project, we found that the risk allele of a novel SNP (rs77275268), which is closely correlated with rs9397435, disrupts a partially methylated CpG sequence within a known CTCF binding site. These studies demonstrate that shifting the analysis among ancestral populations can provide valuable resolution in association mapping.
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| 10. |
- Su, R., et al.
(författare)
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How the Anatase-to-Rutile Ratio Influences the Photoreactivity of TiO2
- 2011
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Ingår i: Journal of Physical Chemistry C. - : American Chemical Society (ACS). - 1932-7447 .- 1932-7455. ; 115:49, s. 24287-24292
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Tidskriftsartikel (refereegranskat)abstract
- In 1991, Bickley et al. proposed a synergetic effect between anatase and rutile in Degussa P25. Since then, there has been an intensive debate about the correctness of this proposal, the origin of the synergism, and the right polymorph composition. However, a comparison of pure titanium dioxide samples with various anatase-to-rutile ratios, but otherwise identical properties, is missing. In this paper, we report about a series of utterly pure, highly porous titanium dioxide films with identical grain sizes, surface areas, and crystallinity, but varying polymorph compositions. Photocatalytic oxidation of methylene blue was utilized to investigate the influence of the anatase-to-rutile ratio on the photoreactivity. We clearly observe the synergetic effect within a well-defined range of anatase-to-rutile ratios. A film with similar to 60% anatase and similar to 40% rutile exhibits optimal performance at a 50% improved activity compared with pure anatase.
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| 11. |
- Su, R., et al.
(författare)
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Rapid Synthesis of Porous, Mixed Phase Titania Films with Tailored Orientation of Rutile for Enhanced Photocatalytic Performance
- 2013
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Ingår i: Journal of Physical Chemistry C. - : American Chemical Society (ACS). - 1932-7447 .- 1932-7455. ; 117:51, s. 27039-27046
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Tidskriftsartikel (refereegranskat)abstract
- We report on a new, one-step electrochemical oxidation method for the rapid synthesis of mixed phase, polycrystalline TiO2 porous films with oriented rutile within a few minutes. The orientation as well as the surface chemical composition of rutile nanocrystallites can readily be tuned by adjusting the additive concentrations of HCl or HF in the electrolyte during synthesis. All TiO2 films show similar large specific surface area, which is ideal for the application of photocatalysis and photoelectrocatalysis. Compared to the random-oriented TiO2 film, films with an increasing portion of exposed rutile (101) facets were found to be characterized by enhanced photocatalytic oxidation and photoelectrochemical performances. We also observed a synergistic promotion effect of the orientation and surface F impurity. Most interesting, our tailor-oriented porous TiO2 films prepared using HF as additive show an impressive photocurrent generation at zero bias, which is similar to 50 times higher compared to that of the random-oriented TiO2 film.
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| 12. |
- Österlund, Lars, 1967-, et al.
(författare)
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Bridging the pressure gap in surface science at the atomic level : H/Cu(110)
- 2001
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Ingår i: Physical Review Letters. - 0031-9007 .- 1079-7114. ; 86:3, s. 460-463
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Tidskriftsartikel (refereegranskat)abstract
- The structural response of the Cu(110) surface to H-2 gas pressures ranging from 10(-13) to 1 bar is studied using a novel high-pressure scanning tunneling microscope (HP-STM). We find that at H-2 pressures larger than 2 mbar the Cu(110) surface reconstructs into the (1 X 2) "missing-row" structure. From a quantitative analysis of the pressure dependence of the surface reconstruction, we conclude that Cu(110) responds identically to hydrogen at ultrahigh vacuum conditions and at atmospheric pressures. From the HP-STM data, we extract refined values for the adsorption and desorption rate constants.
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| 13. |
- Österlund, Lars, 1967-, et al.
(författare)
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Quantitative determination of adsorbate-adsorbate interactions
- 1999
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Ingår i: Physical Review Letters. - 0031-9007 .- 1079-7114. ; 83:23, s. 4812-4815
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Tidskriftsartikel (refereegranskat)abstract
- A new concept called configuration distribution analysis is introduced to extract quantitative information on adsorbate-adsorbate interactions from high-resolution scanning tunneling microscopy data. From atom-resolved nitrogen island configurations on an Fe(100) surface we show that the propensity to form small, compact c(2 X 2) nitrogen islands is due to a nearest neighbor repulsion and next-nearest neighbor attraction. We demonstrate the importance of including many-body terms and elastic interactions to account for the detailed description of the island distribution.
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