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| 2. |
- Bellenguez, C, et al.
(författare)
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New insights into the genetic etiology of Alzheimer's disease and related dementias
- 2022
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Ingår i: Nature genetics. - : Springer Science and Business Media LLC. - 1546-1718 .- 1061-4036. ; 54:4, s. 412-436
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Tidskriftsartikel (refereegranskat)abstract
- Characterization of the genetic landscape of Alzheimer’s disease (AD) and related dementias (ADD) provides a unique opportunity for a better understanding of the associated pathophysiological processes. We performed a two-stage genome-wide association study totaling 111,326 clinically diagnosed/‘proxy’ AD cases and 677,663 controls. We found 75 risk loci, of which 42 were new at the time of analysis. Pathway enrichment analyses confirmed the involvement of amyloid/tau pathways and highlighted microglia implication. Gene prioritization in the new loci identified 31 genes that were suggestive of new genetically associated processes, including the tumor necrosis factor alpha pathway through the linear ubiquitin chain assembly complex. We also built a new genetic risk score associated with the risk of future AD/dementia or progression from mild cognitive impairment to AD/dementia. The improvement in prediction led to a 1.6- to 1.9-fold increase in AD risk from the lowest to the highest decile, in addition to effects of age and the APOE ε4 allele.
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| 3. |
- Wang, Li-San, et al.
(författare)
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Rarity of the Alzheimer Disease-Protective APP A673T Variant in the United States.
- 2015
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Ingår i: JAMA neurology. - : American Medical Association (AMA). - 2168-6157 .- 2168-6149. ; 72:2
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Tidskriftsartikel (refereegranskat)abstract
- Recently, a rare variant in the amyloid precursor protein gene (APP) was described in a population from Iceland. This variant, in which alanine is replaced by threonine at position 673 (A673T), appears to protect against late-onset Alzheimer disease (AD). We evaluated the frequency of this variant in AD cases and cognitively normal controls to determine whether this variant will significantly contribute to risk assessment in individuals in the United States.
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| 4. |
- Heald, G. H., et al.
(författare)
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The LOFAR Multifrequency Snapshot Sky Survey (MSSS) : I. Survey description and first results
- 2015
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Ingår i: Astronomy and Astrophysics. - : EDP Sciences. - 0004-6361 .- 1432-0746. ; 582, s. 1-22
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Tidskriftsartikel (refereegranskat)abstract
- We present the Multifrequency Snapshot Sky Survey (MSSS), the first northern-sky Low Frequency Array (LOFAR) imaging survey. In this introductory paper, we first describe in detail the motivation and design of the survey. Compared to previous radio surveys, MSSS is exceptional due to its intrinsic multifrequency nature providing information about the spectral properties of the detected sources over more than two octaves (from 30 to 160 MHz). The broadband frequency coverage, together with the fast survey speed generated by LOFAR’s multibeaming capabilities, make MSSS the first survey of the sort anticipated to be carried out with the forthcoming Square Kilometre Array (SKA). Two of the sixteen frequency bands included in the survey were chosen to exactly overlap the frequency coverage of large-area Very Large Array (VLA) and Giant Metrewave Radio Telescope (GMRT) surveys at 74 MHz and 151 MHz respectively. The survey performance is illustrated within the MSSS Verification Field (MVF), a region of 100 square degrees centered at (α,δ)J2000 = (15h,69°). The MSSS results from the MVF are compared with previous radio survey catalogs. We assess the flux and astrometric uncertainties in the catalog, as well as the completeness and reliability considering our source finding strategy. We determine the 90% completeness levels within the MVF to be 100 mJy at 135 MHz with 108″ resolution, and 550 mJy at 50 MHz with 166″ resolution. Images and catalogs for the full survey, expected to contain 150 000–200 000 sources, will be released to a public web server. We outline the plans for the ongoing production of the final survey products, and the ultimate public release of images and source catalogs.
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| 7. |
- Blagorodnova, N., et al.
(författare)
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iPTF16fnl : A Faint and Fast Tidal Disruption Event in an E plus A Galaxy
- 2017
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Ingår i: Astrophysical Journal. - : American Astronomical Society. - 0004-637X .- 1538-4357. ; 844:1
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Tidskriftsartikel (refereegranskat)abstract
- We present ground-based and Swift observations of iPTF16fnl, a likely tidal disruption event (TDE) discovered by the intermediate Palomar Transient Factory (iPTF) survey at 66.6 Mpc. The light curve of the object peaked at an absolute mag M-g = -17.2. The maximum bolometric luminosity (from optical and UV) was L-p similar or equal to (1.0 +/- 0.15) x 10(43) erg s(-1), an order of magnitude fainter than any other optical TDE discovered so far. The luminosity in the first 60 days is consistent with an exponential decay, with L proportional to e(-(t-t0)/T), where t(0) = 57631.0 (MJD) and tau similar or equal to 15 days. The X-ray shows a marginal detection at L-X = 2.4(-1.1)(1.9) x 10(39) erg s(-1) (Swift X-ray Telescope). No radio counterpart was detected down to 3s, providing upper limits for monochromatic radio luminosities of nu L-nu < 2.3 x 10(36) erg s(-1) and nLn < 1.7 x 10(37) erg s(-1) (Very Large Array, 6.1 and 22 GHz). The blackbody temperature, obtained from combined Swift UV and optical photometry, shows a constant value of 19,000 K. The transient spectrum at peak is characterized by broad He II and Ha emission lines, with FWHMs of about 14,000 km s(-1) and 10,000 km s(-1), respectively. He. I lines are also detected at lambda lambda 5875 and 6678. The spectrum of the host is dominated by strong Balmer absorption lines, which are consistent with a post-starburst (E+A) galaxy with an age of similar to 650 Myr and solar metallicity. The characteristics of iPTF16fnl make it an outlier on both luminosity and decay timescales, as compared to other optically selected TDEs. The discovery of such a faint optical event suggests a higher rate of tidal disruptions, as low-luminosity events may have gone unnoticed in previous searches.
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| 8. |
- Clarke, A. O., et al.
(författare)
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Signatures from a merging galaxy cluster and its AGN population: LOFAR observations of Abell 1682
- 2019
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Ingår i: Astronomy and Astrophysics. - : EDP Sciences. - 0004-6361 .- 1432-0746. ; 627
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Tidskriftsartikel (refereegranskat)abstract
- We present LOFAR data from 110-180 MHz of the merging galaxy cluster Abell 1682, alongside archival optical, radio, and X-ray data. Our images of 6 arcsec in resolution at low frequencies reveal new structures associated with numerous radio galaxies in the cluster. At a resolution of 20 arcsec we see diffuse emission throughout the cluster over hundreds of kiloparsecs, indicating particle acceleration mechanisms are in play as a result of the cluster merger event and powerful active galactic nuclei. We show that a significant part of the cluster emission is from an old radio galaxy with very steep spectrum emission (having a spectral index of α < -2.5). Furthermore, we identify a new region of diffuse steep-spectrum emission (α < -1.1) as a candidate for a radio halo which is co-spatial with the centre of the cluster merger. We suggest its origin as a population of old and mildly relativistic electrons left over from radio galaxies throughout the cluster which have been re-accelerated to higher energies by shocks and turbulence induced by the cluster merger event. We also note the discovery of six new giant radio galaxies in the vicinity of Abell 1682.
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| 9. |
- Gezari, S., et al.
(författare)
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iPTF Discovery of the Rapid Turn-on of a Luminous Quasar
- 2017
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Ingår i: Astrophysical Journal. - : American Astronomical Society. - 0004-637X .- 1538-4357. ; 835:2
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Tidskriftsartikel (refereegranskat)abstract
- We present a radio-quiet quasar at z = 0.237 discovered turning on by the intermediate Palomar Transient Factory (iPTF). The transient, iPTF 16bco, was detected by iPTF in the nucleus of a galaxy with an archival Sloan Digital Sky Survey spectrum with weak narrow-line emission characteristic of a low-ionization nuclear emission-line region (LINER). Our follow-up spectra show the dramatic appearance of broad Balmer lines and a power-law continuum characteristic of a luminous (L-bol approximate to 10(45) erg s(-1)) type 1 quasar 12 yr later. Our photometric monitoring with PTF from 2009-2012 and serendipitous X-ray observations from the XMM-Newton Slew Survey in 2011 and 2015 constrain the change of state to have occurred less than 500 days before the iPTF detection. An enhanced broad H alpha/[O III] lambda 5007 line ratio in the type 1 state relative to other changing-look quasars also is suggestive of the most rapid change of state yet observed in a quasar. We argue that the > 10 increase in Eddington ratio inferred from the brightening in UV and X-ray continuum flux is more likely due to an intrinsic change in the accretion rate of a preexisting accretion disk than an external mechanism such as variable obscuration, microlensing, or the tidal disruption of a star. However, further monitoring will be helpful in better constraining the mechanism driving this change of state. The rapid turn-on of the quasar is much shorter than the viscous infall timescale of an accretion disk and requires a disk instability that can develop around a similar to 10(8) M circle dot black hole on timescales less than 1 yr.
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| 10. |
- Mulcahy, D. D., et al.
(författare)
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Investigation of the cosmic ray population and magnetic field strength in the halo of NGC 891
- 2018
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Ingår i: Astronomy and Astrophysics. - : EDP Sciences. - 0004-6361 .- 1432-0746. ; 615
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Tidskriftsartikel (refereegranskat)abstract
- Context. Cosmic rays and magnetic fields play an important role for the formation and dynamics of gaseous halos of galaxies. Aims. Low-frequency radio continuum observations of edge-on galaxies are ideal to study cosmic-ray electrons (CREs) in halos via radio synchrotron emission and to measure magnetic field strengths. Spectral information can be used to test models of CRE propagation. Free-free absorption by ionized gas at low frequencies allows us to investigate the properties of the warm ionized medium in the disk. Methods. We obtained new observations of the edge-on spiral galaxy NGC 891 at 129-163 MHz with the LOw Frequency ARray (LOFAR) and at 13-18 GHz with the Arcminute Microkelvin Imager (AMI) and combine them with recent high-resolution Very Large Array (VLA) observations at 1-2 GHz, enabling us to study the radio continuum emission over two orders of magnitude in frequency. Results. The spectrum of the integrated nonthermal flux density can be fitted by a power law with a spectral steepening towards higher frequencies or by a curved polynomial. Spectral flattening at low frequencies due to free-free absorption is detected in star-forming regions of the disk. The mean magnetic field strength in the halo is 7 +/- 2 mu G. The scale heights of the nonthermal halo emission at 146 MHz are larger than those at 1.5 GHz everywhere, with a mean ratio of 1.7 +/- 0.3, indicating that spectral ageing of CREs is important and that diffusive propagation dominates. The halo scale heights at 146 MHz decrease with increasing magnetic field strengths which is a signature of dominating synchrotron losses of CREs. On the other hand, the spectral index between 146 MHz and 1.5 GHz linearly steepens from the disk to the halo, indicating that advection rather than diffusion is the dominating CRE transport process. This issue calls for refined modelling of CRE propagation. Conclusions. Free-free absorption is probably important at and below about 150 MHz in the disks of edge-on galaxies. To reliably separate the thermal and nonthermal emission components, to investigate spectral steepening due to CRE energy losses, and to measure magnetic field strengths in the disk and halo, wide frequency coverage and high spatial resolution are indispensable.
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| 13. |
- Liu, Yuanzhen, et al.
(författare)
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Genomic variation in montane bumblebees in Scandinavia : High levels of intraspecific diversity despite population vulnerability
- 2024
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Ingår i: Molecular Ecology. - : John Wiley & Sons. - 0962-1083 .- 1365-294X. ; 33:4
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Tidskriftsartikel (refereegranskat)abstract
- Populations of many bumblebee species are declining, with distributions shifting northwards to track suitable climates. Climate change is considered a major contributing factor. Arctic species are particularly vulnerable as they cannot shift further north, making assessment of their population viability important. Analysis of levels of whole-genome variation is a powerful way to analyse population declines and fragmentation. Here, we use genome sequencing to analyse genetic variation in seven species of bumblebee from the Scandinavian mountains, including two classified as vulnerable. We sequenced 333 samples from across the ranges of these species in Sweden. Estimates of effective population size (NE) vary from ~55,000 for species with restricted high alpine distributions to 220,000 for more widespread species. Population fragmentation is generally very low or undetectable over large distances in the mountains, suggesting an absence of barriers to gene flow. The relatively high NE and low population structure indicate that none of the species are at immediate risk of negative genetic effects caused by high levels of genetic drift. However, reconstruction of historical fluctuations in NE indicates that the arctic specialist species Bombus hyperboreus has experienced population declines since the last ice age and we detected one highly inbred diploid male of this species close to the southern limit of its range, potentially indicating elevated genetic load. Although the levels of genetic variation in montane bumblebee populations are currently relatively high, their ranges are predicted to shrink drastically due to the effects of climate change and monitoring is essential to detect future population declines.
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| 14. |
- Lundgaard, Agnete T., et al.
(författare)
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BALDR : A Web-based platform for informed comparison and prioritization of biomarker candidates for type 2 diabetes mellitus
- 2023
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Ingår i: PLoS Computational Biology. - 1553-734X. ; 19:8 August
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Tidskriftsartikel (refereegranskat)abstract
- Novel biomarkers are key to addressing the ongoing pandemic of type 2 diabetes mellitus. While new technologies have improved the potential of identifying such biomarkers, at the same time there is an increasing need for informed prioritization to ensure efficient downstream verification. We have built BALDR, an automated pipeline for biomarker comparison and prioritization in the context of diabetes. BALDR includes protein, gene, and disease data from major public repositories, text-mining data, and human and mouse experimental data from the IMI2 RHAPSODY consortium. These data are provided as easy-to-read figures and tables enabling direct comparison of up to 20 biomarker candidates for diabetes through the public website https://baldr.cpr.ku.dk.
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| 15. |
- Sharma, R., et al.
(författare)
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Radio/X-ray correlations and variability in the X-ray binary LS I +61°303
- 2021
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Ingår i: Monthly Notices of the Royal Astronomical Society. - : Oxford University Press (OUP). - 0035-8711 .- 1365-2966. ; 500:3, s. 4166-4172
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Tidskriftsartikel (refereegranskat)abstract
- The high-mass X-ray binary LS I +61°303 exhibits variability in its radio and X-ray emissions, ranging from minute to hour time-scales. At such short time-scales, not much is known about the possible correlations between these two emissions from this source, which might offer hints to their origin. Here, we study the relationship between these emissions using simultaneous X-ray and radio monitoring.We present new radio observations using the Arcminute Microkelvin Imager Large Array telescope at two frequency bands, 13-15.5 and 15.5-18 GHz.We also describe new X-ray observations performed using the XMM-Newton telescope. These X-ray and radio observations overlapped for five hours. We find for the first time that the radio and X-ray emission are correlated up to 81 per cent with their few per cent variability correlated up to 40 per cent. We discuss possible physical scenarios that produces the observed correlations and variability in the radio and X-ray emission of LS I +61°303.
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