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| 2. |
- Cherif, E., et al.
(författare)
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Evolution of sex chromosomes prior to speciation in the dioecious Phoenix species
- 2016
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Ingår i: Journal of Evolutionary Biology. - : Wiley. - 1010-061X .- 1420-9101. ; 29:8, s. 1513-1522
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Tidskriftsartikel (refereegranskat)abstract
- Understanding the driving forces and molecular processes underlying dioecy and sex chromosome evolution, leading from hermaphroditism to the occurrence of male and female individuals, is of considerable interest in fundamental and applied research. The genus Phoenix, belonging to the Arecaceae family, consists uniquely of dioecious species. Phylogenetic data suggest that the genus Phoenix has diverged from a hermaphroditic ancestor which is also shared with its closest relatives. We have investigated the cessation of recombination in the sex-determination region within the genus Phoenix as a whole by extending the analysis of P.dactylifera SSR sex-related loci to eight other species within the genus. Phylogenetic analysis of a date palm sex-linked PdMYB1 gene in these species has revealed that sex-linked alleles have not clustered in a species-dependent way but rather in X and Y-allele clusters. Our data show that sex chromosomes evolved from a common autosomal origin before the diversification of the extant dioecious species.
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| 3. |
- Cherif, Mehdi, et al.
(författare)
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Potential for Local Fertilization : A Benthocosm Test of Long-Term and Short-Term Effects of Mussel Excretion on the Plankton
- 2016
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Ingår i: PLOS ONE. - : Public Library of Science (PLoS). - 1932-6203. ; 11:6
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Tidskriftsartikel (refereegranskat)abstract
- Mussel aquaculture has expanded worldwide and it is important to assess its impact on the water column and the planktonic food web to determine the sustainability of farming practices. Mussel farming may affect the planktonic food web indirectly by excreting bioavailable nutrients in the water column (a short-term effect) or by increasing nutrient effluxes from bio-deposit-enriched sediments (a long-term effect). We tested both of these indirect effects in a lagoon by using plankton-enclosing benthocosms that were placed on the bottom of a shallow lagoon either inside of a mussel farm or at reference sites with no history of aquaculture. At each site, half of the benthocosms were enriched with seawater that had held mussels (excretion treatment), the other half received non-enriched seawater as a control treatment. We monitored nutrients ([PO43-] and [NH4+]), dissolved oxygen and plankton components (bacteria, the phytoplankton and the zooplankton) over 5 days. We found a significant relationship between long-term accumulation of mussel biodeposits in sediments, water-column nutrient concentrations and plankton growth. Effects of mussel excretion were not detected, too weak to be significant given the spatial and temporal variability observed in the lagoon. Effects of mussels on the water column are thus likely to be coupled to benthic processes in such semi-enclosed water bodies.
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| 4. |
- Creed, Irena F., et al.
(författare)
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Global change-driven effects on dissolved organic matter composition : Implications for food webs of northern lakes
- 2018
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Ingår i: Global Change Biology. - : Wiley. - 1354-1013 .- 1365-2486. ; 24:8, s. 3692-3714
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Forskningsöversikt (refereegranskat)abstract
- Northern ecosystems are experiencing some of the most dramatic impacts of global change on Earth. Rising temperatures, hydrological intensification, changes in atmospheric acid deposition and associated acidification recovery, and changes in vegetative cover are resulting in fundamental changes in terrestrial-aquatic biogeochemical linkages. The effects of global change are readily observed in alterations in the supply of dissolved organic matter (DOM)-the messenger between terrestrial and lake ecosystems-with potentially profound effects on the structure and function of lakes. Northern terrestrial ecosystems contain substantial stores of organic matter and filter or funnel DOM, affecting the timing and magnitude of DOM delivery to surface waters. This terrestrial DOM is processed in streams, rivers, and lakes, ultimately shifting its composition, stoichiometry, and bioavailability. Here, we explore the potential consequences of these global change-driven effects for lake food webs at northern latitudes. Notably, we provide evidence that increased allochthonous DOM supply to lakes is overwhelming increased autochthonous DOM supply that potentially results from earlier ice-out and a longer growing season. Furthermore, we assess the potential implications of this shift for the nutritional quality of autotrophs in terms of their stoichiometry, fatty acid composition, toxin production, and methylmercury concentration, and therefore, contaminant transfer through the food web. We conclude that global change in northern regions leads not only to reduced primary productivity but also to nutritionally poorer lake food webs, with discernible consequences for the trophic web to fish and humans.
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| 5. |
- Portalier, Sebastien M. J., et al.
(författare)
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Size-related effects of physical factors on phytoplankton communities
- 2016
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Ingår i: Ecological Modelling. - : Elsevier. - 0304-3800 .- 1872-7026. ; 323, s. 41-50
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Tidskriftsartikel (refereegranskat)abstract
- Phytoplankton communities are influenced by light availability. Therefore, one factor promoting phytoplankton species persistence is their ability to stay within the euphotic zone. This ability is determined by the interplay between species mass, buoyancy and dispersion, which are driven by physical factors. In this study, we investigate how these physical factors and light-use efficiency, all correlated with cell size, influence species persistence. Our model shows, first, that species can persist only within a size-dependent range of turbulence strength. The minimal level of turbulence required for persistence increases drastically with cell size, while all species reach similar maximal levels of turbulence. Second, the maximal water column depth allowing persistence is also size-dependent: large cells show a maximal depth at both low and high turbulence strength, while small cells show this pattern only at high turbulence strength. This study emphasizes the importance of the physical medium in ecosystems and its interplay with cell size for phytoplankton dynamics and bloom condition.
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| 6. |
- Portalier, Sebastien M. J., et al.
(författare)
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The mechanics of predator-prey interactions : first principles of physics predict predator-prey size ratios
- 2019
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Ingår i: Functional Ecology. - : Wiley. - 0269-8463 .- 1365-2435. ; 33:2, s. 323-334
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Tidskriftsartikel (refereegranskat)abstract
- Robust predictions of predator-prey interactions are fundamental for the understanding of food webs, their structure, dynamics, resistance to species loss, response to invasions and ecosystem function. Most current food web models measure parameters at the food web level to predict patterns at the same level. Thus, they are sensitive to the quality of the data and may be ineffective in predicting non-observed interactions and disturbed food webs. There is a need for mechanistic models that predict the occurrence of a predator-prey interaction based on lower levels of organization (i.e. the traits of organisms) and the properties of their environment. Here, we present such a model that focuses on the predation act itself. We built a Newtonian, mechanical model for the processes of searching, capturing and handling of a prey item by a predator. Associated with general metabolic laws, we predict the net energy gain from predation for pairs of pelagic or flying predator species and their prey depending on their body sizes. Predicted interactions match well with data from the most extensive predator-prey database, and overall model accuracy is greater than the allometric niche model. Our model shows that it is possible to accurately predict the structure of food webs using only a few mechanical traits. It underlines the importance of physical constraints in structuring food webs.
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| 7. |
- Silfverberg, Thomas, et al.
(författare)
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Haematopoietic stem cell transplantation for treatment of relapsing-remitting multiple sclerosis in Sweden: an observational cohort study
- 2023
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Ingår i: Journal of Neurology Neurosurgery and Psychiatry. - : BMJ Publishing Group Ltd. - 0022-3050 .- 1468-330X.
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Tidskriftsartikel (refereegranskat)abstract
- BackgroundA growing evidence base supports the use of autologous haematopoietic stem cell transplantation (aHSCT) for treatment of relapsing-remitting multiple sclerosis (RRMS), but it has not yet been integrated into most national clinical guidelines. The objective of this study was to assess efficacy and safety when aHSCT is implemented in routine healthcare.MethodsWe assessed 231 patients and the final analysis included 174 RRMS patients who were treated with aHSCT in Sweden before 1 January 2020. Efficacy was evaluated by performing a retrospective analysis of prospectively collected data from the Swedish MS registry. Procedure-related safety was assessed by analysing data from electronic patient records covering a period of 100 days following aHSCT.ResultsWith a median follow-up time of 5.5 (IQR: 3.4-7.5) years, the Kaplan-Meier estimate for no evidence of disease activity was 73% (95% CI 66% to 81%) at 5 years and 65% (95% CI 57% to 75%) at 10 years. Out of the 149 patients with baseline disability, 80 (54%) improved, 55 (37%) were stable and 14 (9%) deteriorated. The mean number of adverse events per patient was 1.7 (& PLUSMN;SD: 1.5) for grade 3 events and 0.06 (& PLUSMN;SD: 0.3) for grade 4 events. Febrile neutropenia was the most common adverse event, affecting 68% of patients. There was no treatment-related mortality.ConclusionsTreatment with aHSCT for RRMS is associated with freedom from disease activity in a majority of patients, with acceptable adverse events. This procedure should be considered a standard of care for patients with highly active RRMS.
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