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- Ahlmanner, Filip, et al.
(author)
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CD39+ regulatory T cells accumulate in colon adenocarcinomas and display markers of increased suppressive function
- 2018
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In: Oncotarget. - : Impact Journals, LLC. - 1949-2553. ; 9:97, s. 36993-37007
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Journal article (peer-reviewed)abstract
- Increasing knowledge of the function and regulation of tumor-infiltrating lymphocytes has led to new insights in cancer immunotherapy. Regulatory T cells (Treg) accumulate in colon tumors, and we recently showed that CD39+ Treg from cancer patients inhibit transendothelial migration of conventional T cells. CD39 mediates the hydrolysis of ATP to immunosuppressive adenosine and adds to the immunosuppressive effects of Treg. Here, we further investigated the regulatory features of intratumoral CD39+ Treg in colon cancer. Using flow cytometry analyses of cells from 46 colon cancer patients, we confirm the accumulation of CD39+ Treg in the tumor tissue compared to unaffected colon tissue, and also show that tumor-infiltrating Treg express more CD39 and Foxp3 on a per cell basis. Furthermore, CD39+ Treg in tumors express markers indicating increased turnover and suppressive ability. In particular, tumor-infiltrating CD39+ Treg have high expression of surface molecules related to immunosuppression, such as ICOS, PD-L1 and CTLA-4. Functional suppression assays also indicate potent suppressive capacity of CD39+ Treg on proliferation and IFN-γ secretion by conventional T cells. In conclusion, our results identify tumor-infiltrating CD39+ Treg as a numerous and potentially important immunosuppressive subset, and suggest that immunotherapy aimed at reducing the activity of CD39+ Treg may be particularly useful in the setting of colon cancer. © 2018 Ahlmanner et al.
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| 2. |
- Eklöf, Jenny, 1975, et al.
(author)
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Phylogeny of benthic Phyllodocidae (Polychaeta) based on morphological and molecular data
- 2007
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In: Molecular Phylogenetics and Evolution. - : Elsevier BV. - 1055-7903. ; 45:1, s. 261-271
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Journal article (peer-reviewed)abstract
- A combined molecular (18S rDNA, 28S rDNA, 16S rDNA and COI) and morphological analysis of the benthic phyllodocids is presented for the first time. Nineteen phyllodocids and two outgroup taxa are assessed using parsimony, maximum likelihood and Bayesian analyses. We demonstrate high degrees in homoplasy in the traditionally used morphological phyllodocid characters, and show that all the three current subfamilies Phyllodocinae, Eteoninae and Notophyllinae are non-monophyletic. The genera Eulalia, Eumida, Protomystides, Pseudomystides, Pterocirrus and Sige form a well-supported group, as does Mystides and Nereiphylla. Another clade with strong support includes Eteone and Paranaitis, although with Eteone nested within a paraphyletic Paranaitis. The relationship between these two taxa indicate that the unusual arrangement of modified cirri on the first segments in Eteone is due to a fusion of segment 1 and 2 where the cirri of segment 1 have been reduced. Eulalia is non-monophyletic and should be split, minimally into two groups. Our results are ambiguous regarding the ancestral phyllodocid condition of absence–presence of median antenna or nuchal papilla and uniramous or biramous parapodia, but shows that the absence of cirri on segment 3 (previously an apomorphy, for e.g., Mystides, Pseudomystides and Hesionura) is maximally homoplastic.
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| 3. |
- Eklöf, Jenny, 1975
(author)
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Taxonomy and phylogeny of polychaetes
- 2010
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Doctoral thesis (other academic/artistic)abstract
- Polychaetes are a large group of segmented worms that display an enormous morphological diversity. Molecular data has shown in recent years that groups previously thought to be separate from polychaetes are actually part of the group. The relationships within polychaete groups have been difficult to discern, and molecular data only partly corroborate classifications done on morphological grounds. The main focus of this thesis is on Phyllodocidae, a family of polychaetes, and its phylogenetic relationships. Our results show that none of the phyllodocid subfamilies, as previously delineated by morphology, find support from molecular data. Instead groups previously not recognized receive high support. A number of polychaete families are holopelagic, and most of these have been regarded as closely related to phyllodocids. We have found that one of these holopelagic families, Alciopidae, is well nested within the phyllodocids, with its closest sister being Eumida arctica, making the genus Eumida, as delineated today, paraphyletic. Part of this thesis also deals with cryptic species, which means that two or more species are virtually impossible to separate morphologically, but still represent separately evolving lineages, reproductively isolated from each other. We have found that Arctic and boreal populations of Paranaitis wahlbergi belong to two separate species, and the boreal populations are referred to a new species, P. katoi sp. n. We have also found that sympatric populations of Notophyllum foliosum, found in deep and shallow waters are two separate species, morphologically distinguished only by subtle details in their colouration, and the deep form is described as N. crypticum sp. n. A description is also provided for Axiokebuita, previously not found in European waters. Due to delineation problems with the two described species in the genus it was not possible to refer these new specimens to either of them or to a new species. A phylogenetic analysis of molecular data confirms the position of Axiokebuita among scalibregmatids. Part of this thesis also deals with cryptic species, which means that two or more species are virtually impossible to separate morphologically, but still represent separately evolving lineages, reproductively isolated from each other. We have found that Arctic and boreal populations of Paranaitis wahlbergi belong to two separate species, and the boreal populations are referred to a new species, P. katoi sp. n. We have also found that sympatric populations of Notophyllum foliosum, found in deep and shallow waters are two separate species, morphologically distinguished only by subtle details in their colouration, and the deep form is described as N. crypticum sp. n. A description is also provided for Axiokebuita, previously not found in European waters. Due to delineation problems with the two described species in the genus it was not possible to refer these new specimens to either of them or to a new species. A phylogenetic analysis of molecular data confirms the position of Axiokebuita among scalibregmatids.
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| 4. |
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| 5. |
- Nygren, Arne, 1971, et al.
(author)
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Cryptic species of Notophyllum (Polychaeta: Phyllodocidae) in Scandinavian waters
- 2010
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In: Organisms Diversity & Evolution. - : Springer Science and Business Media LLC. - 1439-6092 .- 1618-1077. ; 10:3, s. 193-204
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Journal article (peer-reviewed)abstract
- The phyllodocid polychaete Notophyllum foliosum occurs in two colour morphs in Swedish and Norwegian waters, one palish yellow to grey form with black patches that is restricted to deeper waters and often associated with reefs of the deep-water coral Lophelia pertusa, and one usually yellow-orange form with black patches and white spots that is usually encountered on more shallow bottoms. We have sampled the two forms from sympatric occurrences in Norway, and the shallow form from the Swedish west coast. Phylogenetic and haplotype analyses based on the mitochondrial cytochrome c oxidase subunit I (COI) gene and the nuclear internal transcribed spacer region (ITS1-5.8SrDNA-ITS2) unequivocally indicate that the two forms represent different species. We apply the name N. foliosum (Sars, 1835) to the 'shallow form', and propose N. crypticum n. sp. for the 'deep form'. A lectotype is fixed for N. foliosum.
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