| 1. |
- Olajos, Fredrik, 1987-
(author)
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Using environmental DNA to unravel aquatic ecosystem dynamics
- 2024
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Doctoral thesis (other academic/artistic)abstract
- Human-induced climate change has led to unprecedented declines in Earth's biodiversity and significant habitat loss. Aquatic ecosystems areespecially at risk, facing pollution, overexploitation, and destruction. Consequently, monitoring biodiversity is critical. Traditional monitoring methods are often low in detection rates, time-consuming, invasive, and harmful to species, which hampers comprehensive biodiversity assessments. Environmental DNA (eDNA) offers a rapid alternative fortaxonomic identification, extracting genetic material from soil, sediments, or water without capturing living organisms, proving useful where traditional methods fall short. However, its integration into aquatic ecology is hampered by unresolved methodological issues.This thesis demonstrates how eDNA can help reconstruct fish colonization histories in lakes post-glacial retreat. I employed species-specific primers with digital droplet PCR and metagenomic shotgun sequencing on ancient DNA from Holocene lake sediments. My findings show the detectability of DNA from ancient fish populations. However, each method exhibited technical limitations that led to varying degrees offalse negatives and false positive results. Additionally, I examined how Northern pike (Esox Lucius) affects ecological speciation in Europeanwhitefish (Coregonus lavaretus), promoting a shift from insectivorous to piscivorous states, enhancing predator biodiversity and biomass. Dietan alyses of piscivorous birds through digital droplet PCR revealed that smaller whitefish support a larger, more diverse bird community. Finally, I compared two molecular techniques for quantifying bird diets from fecal DNA, finding that metabarcoding with a universal fish primer and digital droplet PCR yielded similar results. This research enhances ourunderstanding of the potential and limitations of molecular tools forspecies identification and aids the integration of eDNA into aquatic ecology.
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| 2. |
- Karlsson Tiselius, Andreas, 1977-
(author)
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Island biogeography of young land uplift islands - viewed through the lens of bryophytes in a northern Swedish archipelago
- 2016
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Doctoral thesis (other academic/artistic)abstract
- Increasing habitat fragmentation and rapid global warming is changing the conditions for species populations and ecological communities around the world. This presents challenges for the maintenance of biodiversity and a dominant paradigm for conservation in fragmented habitats is given by island biogeography and metapopulation (or metacommunity) ecology.In this thesis I approach key concepts (area, connectivity and community assembly) in island biogeography and metacommunity ecology within the context of a dynamic land uplift archipelago. The presented work consists of two interwoven themes: (i) A methodological theme in which statistical approaches are developed to deal with the complexities of multispecies dynamic systems, and (ii) an applied theme dealing with community assembly and island biogeography of bryophytes on young land uplift islands.To describe island connectivity for entire species assemblages, an approach using functional principal component analysis (fPCA) on patch connectivity functions (the connectivity of an island as a continuous function of a variable representing the spatial scale of species dispersal capacities) was developed. In addition, a new statistical method, functional co-inertia analysis (fCoIA), for analyzing co-variation between multivariate species data and continuous functions was developed and applied to the relation between bryophyte species incidences and the island age/area-dynamics.Primarily asexual bryophyte species are dispersal limited and presence probabilities are related to island connectivity. No such patterns were found for species, at least occasionally, producing spores. Our results suggest that bryophyte dispersal is regulated by the contribution of spores to a regional spore rain and that bryophyte species with low spore output at the landscape level may be extra vulnerable under habitat fragmentation and loss. Having specialized asexual propagules increases the presence probabilities on islands, partly compensating for the dispersal limitation in asexual species. This suggests a trade-off between dispersal and establishment capacity, but also points to the importance of local dispersal for maintaining populations under the succession driven spatial turnover of microsites on the islands. Bryophyte colonization is strongly limited by habitat availability when a given habitats is rare, but there seems to exist a threshold over which other processes (e.g. dispersal limitation) become more important. Species with more vagile life history strategies appear to be stronger affected by the area of available habitats than many perennial species
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| 3. |
- Sjödin, Henrik, 1975-
(author)
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Population-level consequences of spatial interactions
- 2013
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Doctoral thesis (other academic/artistic)abstract
- How is the nature of populations governed by the movement decisions made by their members? This is the core question in this thesis. To answer this question, I first assume that s movement decisions are based on conditions in their local environment. Then I derive mathematical relationships that distil the character of individual movement events, and relate the sum of these events to the dynamical properties of the population. I find that the fate of populations depend delicately on the way resident individuals relocate in response to local conditions. This general conclusion is supported by results in the four papers constituting this thesis.In the first paper we derive a deterministic approximation of a stochastic individual-based spatial predator-prey model. We show how general types of movement behaviors either stabilise or destabilise predator-prey dynamics. Based on experimental data on movement behaviors, we conclude that predator-prey dynamics are stabilised if the prey species respond stronger to predator presence than the predatory species respond to prey.In the second paper we derive a new type of functional response that arise when there is a behavioral spatial “race” between predators and prey. Although fundamentally different from classical functional responses, the induced density-dependencies in reproduction rates are similar to those in Holling’s type II and DeAngelis-Beddington’s functional responses.In the third paper we perform a novel systematic investigation of density-dependencies in population growth-rates induced by the spatial covariance in empirical predator-prey systems. We categorise three types of density dependencies: “lagged”, “direct” and “independent”, and find direct and especially lagged density-dependencies to be common. We find that the density-dependencies in most cases are destabilising, which is at odds with the wide-spread view that spatial heterogeneity stabilises consumer-resource dynamics. We also find dependencies of prey density to be more common than of predator density.In the forth paper we consider the evolution of cooperation. We formulate a stochastic individual-based group-formation process and show that profit-dependent group disengagement is evolutionarily stable and allows the emergence of stable cooperative communities.
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| 4. |
- Frisch, Tove, 1949-
(author)
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Fågel, fisk eller förundran? : En studie av förhållningssätt i existentiella frågor, baserad på uppsatser skrivna på ett mångkulturellt vuxengymnasium
- 2006
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Doctoral thesis (other academic/artistic)abstract
- Fågel, fisk eller förundran? A study of existential attitudes based on essays written in a multicultural upper secondary school for adults The aim of this study is to survey and interpret outlooks on life as expressed in 175 essays written (1999-2001) in a multicultural Swedish suburb by adult students learning Swedish, Swedish as a Foreign Language, and Philosophy. What are the recurring themes in these essays? How do they reflect the fundamental existential problems of their authors? The theoretical background rests on existential hermeneutics with Sartre (1943, 1946, 1984) as the most important philosophical source. Other sources are Ödman (1994) and Hellesnes (1989, 2000). All-pervading themes are: God, Meaning of Life, Death, and The Soul. The various ways in which students describe their reflections are gathered in 11 categories on the subject of God, 13 on The Meaning of Life, and 9 on Death. I examine expressions which come across as "extreme" ("existentialism", "determinism", "reason", and "emotion"). Most students, however, express contradictory views. I am, therefore, mainly concerned with contradiction, searching and testing different ideas. Active and passive strategies come to the fore in conflicts between experienced or imagined obstacles and the urge to develop. I also seek to view the essays from a stricter Sartrian perspective, as opposed to the Sartrian-flavoured one in the earlier parts of the study. For this purpose, I rely on Sartre´s phenomenological ontology (1943), his thoughts on freedom and facticity, and other concepts, e.g. anguish. The ontological conflict is examined from a broader perspective, viewing the texts in a socio-cultural context in which identity, religion, and language play important parts. Finally, I discuss my results and try to state the ways in which my former understanding has changed and the surprises I have had.
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| 5. |
- Nonaka, Etsuko, 1971-
(author)
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Evolutionary consequences of ecological interactions
- 2014
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Doctoral thesis (other academic/artistic)abstract
- Eco-evolutionary dynamics integrates the reciprocal interactions betweenecology and evolution. These two branches of biology traditionally assumethe other as static for simplicity. However, increasing evidence shows thatthis simplification may not always hold because ecology and evolution canoperate in similar timescales. This thesis theoretically explores how thereciprocal interactions may influence ecological and evolutionary outcomesin four different eco-evolutionary contexts.Many species of non-social animals live in groups. Aggregating ingroups often has both benefits and costs that depend on group size. Thanksto the benefits of aggregation, population growth likely depends positivelyon population density when it is small. This phenomenon, the Allee effect,has been hypothesized to explain the evolution of aggregation behavior. Ifind that the Allee effect alone does not lead to the evolution whenpopulation dynamics is explicitly accounted for. Some other mechanisms,such as frequent needs for colonizing new patches or anti-aggregation,should be invoked to explain why aggregation behavior could evolve.Phenotypic plasticity is the ability of a genotype to express distinctphenotypes when exposed to different environments. Although it is oftenshown to be adaptive and not costly, highly plastic organisms are rare. Paststudies demonstrated some potential reasons. I test another possibility; costsmay arise from sexual selection because highly plastic individuals may beless preferred as a mate. I show that, even in the absence of the direct cost ofplasticity, the level of plasticity remained low at intermediate strengths ofassortative mating. This pattern is robust across wide ranges of parametervalues.Ecological speciation occurs when ecologically divergent selectionbetween environments causes reproductive isolation between divergingsubpopulations. Several verbal models of ecological speciation emphasizethe roles of phenotypic plasticity in promoting speciation. The complexprocesses involved in speciation, however, are difficult to be evaluated byverbal accounts. I quantitatively test the proposed idea in a mechanisticmodel of ecological speciation in the presence and absence of plasticity. Ifind conditions under which plasticity can promote or hinder ecologicalspeciation. Plasticity facilitates speciation by producing a gap in thedistributions of expressed phenotypes, which serves as a barrier to gene flowin an assortatively mating population.Ecosystem ecology and evolutionary biology are the least integratedfields in ecology and evolution. Natural selection operating at the individuallevels on traits governing ecosystem functions may affect ecosystemproperties, which may feedback to individuals. I reviewed this idea anddemonstrate the feedback loop by using a simple consumer-resource model.
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| 6. |
- Öhlund, Gunnar, 1977-
(author)
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Ecological and evolutionary effects of predation in environmental gradients
- 2012
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Doctoral thesis (other academic/artistic)abstract
- Understanding species interactions and how they affect densities and distributions of organisms is a central theme in ecological research. Studying such interactions in an ecosystem context is challenging as they often depend on species-specific characteristics and rates that not only change during the ontogeny of an organism, but also are affected by the surrounding environment. This thesis focuses on two separate questions and study systems that highlight different aspects of how effects of predation can depend on environmental conditions. In the first part of the thesis, we studied how temperature affects attack rate and handling time, two ecological rates with profound importance for predator-prey dynamics. Using a metaanalysis, we first show that the currently dominating model for temperature dependence in predator-prey interactions, i.e. the Arrhenius equation, has weak support in available empirical literature. This suggests that we need new rules for how and when we can generalize on the temperature-dependence of intake rates. We then use a simple model and a series of experiments to demonstrate that differences in the relative physiological capacity between predator and prey can impose strong non-linear effects on temperature-response curves of attack rate. In the second part of the thesis, we study the role of predation along a benthic-pelagic habitat gradient in promoting divergence and resource polymorphism among prey. We show that presence of a large piscivorous predator, the northern pike (Esox lucius), induces dwarfs, giants or divergence into both ecotypes in populations of European whitefish (Coregonus lavaretus) depending on lake characteristics. Using dated introductions of whitefish as controlled natural experiments, we show that pike presence induces rapid life history divergence between pelagic and littoral habitat use strategies, and that this divergence can translate into partial reproductive isolation in a matter of decades. Our results demonstrate the potential for thresholds in a crucial ecological rate, setting the stage for tipping points with potentially far reaching implications for effects of warming on predator prey dynamics and ecosystem stability. Moreover, they illustrate the potentially drastic consequences of such tipping points by demonstrating the importance of a single predator species as a driving force behind the creation and maintenance of biodiversity in a natural system.
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| 7. |
- Bergström, Ulf, 1971-
(author)
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Spatial heterogeneity and biotic interactions : scaling from experiments to natural systems
- 2004
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Doctoral thesis (other academic/artistic)abstract
- Much of current ecological theory stems from experimental studies. These studies have often been conducted in closed systems, at spatial scales that are much smaller than the systems of interest. It is known that the outcome of these experiments may be seriously affected by artefacts associated with the caging procedures, as well as by the actual difference in spatial scale between experimental and target system. Yet, quantitative methods for estimating and removing artefacts of enclosure and for extrapolating experimental results to the scales of natural systems are largely lacking.The aim of this thesis was to confront some of the problems encountered when scaling from experiments to nature in studies on predator-prey systems, with focus on effects of changes in spatial heterogeneity. Specifically, I examined mechanisms that may cause consumption rate estimates to depend on the size of the experimental arena. I also studied methods for scaling up these process rate estimates to natural predator-prey systems. The studies were performed on invertebrate predator-prey systems found in the northern Baltic Sea. Initially, a descriptive study of small-scale distribution patterns was performed, in order to get background information on how the behaviour of the organisms was manifested in the spatial structure of the community. Experimental studies of two predator-prey systems exposed an artefact that may be widespread in experiments aiming at quantifying biotic interactions. It is caused by predator and prey aggregating along the walls of the experimental containers. This behaviour affects the encounter rate between predator and prey, thereby causing consumption rates to be scale-dependent. Opposing the common belief that larger arenas always produce less biased results, this scale effect may instead be reduced by decreasing arena size. An alternative method for estimating the magnitude of, and subsequently removing, the artefact caused by aggregation along the arena wall was presented.Once unbiased estimates of process functions have been derived, the next step is to scale up the functions to natural systems. This extrapolation entails a considerable increase in spatial heterogeneity, which may have important implications for the dynamics of the system. Moment approximation provides a method of taking the heterogeneity of natural populations into account in the extrapolation process. In the last study of the thesis, the concepts of moment approximation and how to estimate relevant heterogeneity were explained, and it was shown how the method may be used for adding space as a component to a dynamic predator-prey model. It was concluded that moment approximation provides a simple and useful technique for dealing with effects of spatial variation, and that a major benefit of the method is that it provides a way of visualising how heterogeneity affects ecological processes.
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| 8. |
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| 9. |
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