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| 2. |
- Xenikoudakis, G., et al.
(författare)
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Consequences of a demographic bottleneck on genetic structure and variation in the Scandinavian brown bear
- 2015
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Ingår i: Molecular Ecology. - : John Wiley & Sons. - 0962-1083 .- 1365-294X. ; 24:13, s. 3441-3454
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Tidskriftsartikel (refereegranskat)abstract
- The Scandinavian brown bear went through a major decline in population size approximately 100 years ago, due to intense hunting. After being protected, the population subsequently recovered and today numbers in the thousands. The genetic diversity in the contemporary population has been investigated in considerable detail, and it has been shown that the population consists of several subpopulations that display relatively high levels of genetic variation. However, previous studies have been unable to resolve the degree to which the demographic bottleneck impacted the contemporary genetic structure and diversity. In this study, we used mitochondrial and microsatellite DNA markers from pre- and postbottleneck Scandinavian brown bear samples to investigate the effect of the bottleneck. Simulation and multivariate analysis suggested the same genetic structure for the historical and modern samples, which are clustered into three subpopulations in southern, central and northern Scandinavia. However, the southern subpopulation appears to have gone through a marked change in allele frequencies. When comparing the mitochondrial DNA diversity in the whole population, we found a major decline in haplotype numbers across the bottleneck. However, the loss of autosomal genetic diversity was less pronounced, although a significant decline in allelic richness was observed in the southern subpopulation. Approximate Bayesian computations provided clear support for a decline in effective population size during the bottleneck, in both the southern and northern subpopulations. These results have implications for the future management of the Scandinavian brown bear because they indicate a recent loss in genetic diversity and also that the current genetic structure may have been caused by historical ecological processes rather than recent anthropogenic persecution.
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| 3. |
- Cahill, James A, et al.
(författare)
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Genomic evidence of geographically widespread effect of gene flow from polar bears into brown bears.
- 2015
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Ingår i: Molecular Ecology. - : Wiley. - 0962-1083 .- 1365-294X.
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Tidskriftsartikel (refereegranskat)abstract
- Polar bears are an arctic, marine adapted species that is closely related to brown bears. Genome analyses have shown that polar bears are distinct and genetically homogeneous in comparison to brown bears. However, these analyses have also revealed a remarkable episode of polar bear gene flow into the population of brown bears that colonized the Admiralty, Baranof, and Chichagof Islands (ABC Islands) of Alaska. Here, we present an analysis of data from a large panel of polar bear and brown bear genomes that includes brown bears from the ABC Islands, the Alaskan mainland and Europe. Our results provide clear evidence that gene flow between the two species had a geographically wide impact, with polar bear DNA found within the genomes of brown bears living both on the ABC Islands and in the Alaskan mainland. Intriguingly, while brown bear genomes contain up to 8.8% polar bear ancestry, polar bear genomes appear to be devoid of brown bear ancestry, suggesting the presence of a barrier to gene flow in that direction. This article is protected by copyright. All rights reserved.
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| 7. |
- Ersmark, T., et al.
(författare)
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Influence of geometry model approximations on Geant4 simulation results of the Columbus/ISS radiation environment
- 2007
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Ingår i: Radiation Measurements. - : Elsevier BV. - 1350-4487 .- 1879-0925. ; 42, s. 1342-1350
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Tidskriftsartikel (refereegranskat)abstract
- The influence of geometry model approximations on Geant4 Monte Carlo simulation results of the radiation environment on-board the Columbus module of the International Space Station (ISS) has been investigated. Three geometry models of Columbus with different levels of detail and a geometry model of ISS have been developed. These geometries have been used for Geant4 simulations of the radiation environment inside Columbus induced by trapped protons and Galactic Cosmic Ray protons. Simulated dose rates and particle spectra on-board Columbus for each of the three Columbus models, with or without the ISS geometry model included, are presented and compared. From comparisons of simulated dose rates and particle spectra for the three different geometry models it was found that the most detailed geometry model (750 volumes) produced results similar to a much less detailed model (23 volumes). The most detailed geometry model was concluded to be a sufficiently detailed approximation of the physical Columbus for the purpose of proton induced space radiation studies. The simulated dose rates are compatible with measurements on-board the ISS. The simulation results also show that an increase in shielding thickness decreases the simulated dose rate induced by trapped protons. For Galactic Cosmic Ray protons the dose rate remains unchanged or is slightly increased.
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| 8. |
- Ersmark, Tore, et al.
(författare)
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Status of the DESIRE project : Geant4 physics validation studies and first results from columbus/ISS radiation simulations
- 2004
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Ingår i: IEEE NUCLEAR SCIENCE SYMPOSIUM, CONFERENCE RECORD. ; , s. 1540-1544
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Konferensbidrag (övrigt vetenskapligt/konstnärligt)abstract
- The DESIRE (Dose Estimation by Simulation of the ISS Radiation Environment) project aimes to accurately calculate radiation fluxes and doses to astronauts inside the European Columbus module of the International Space Station using Geant4. Firstly physics benchmark studies have been performed and comparisons made to experimental data and other particle transport programs. This will be followed by a detailed evaluation of the incident radiation fields on the ISS and culminate with the geometry modelling and full-scale flux and dose simulations for the Columbus. Geant4 validation studies are presented here. These concern the angle and energy distribution of particles leaving irradiated targets and of energy depositions in the targets. Comparisons are made between simulations using different Geant4 physics models, experimental data and other particle transport programs. Geant4 using the "Binary Cascade" model for inelastic nucleon reactions performs very well in these comparisons but some issues with other models remain to be resolved if these models are to be used for space radiation shielding applications. Results of Geant4 simulations of the transport of relevant radiation field components through the hull of the Columbus/ISS are also presented.
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| 9. |
- Ersmark, Tore, et al.
(författare)
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Status of the DESIRE project : Geant4 physics validation studies and first results from columbus/ISS radiation simulations
- 2004
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Ingår i: IEEE Transactions on Nuclear Science. - 0018-9499 .- 1558-1578. ; 51:4, s. 1378-1384
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Tidskriftsartikel (refereegranskat)abstract
- The Dose Estimation by Simulation of the ISS Radiation Environment (DESIRE) project aims to accurately calculate radiation fluxes and doses to astronauts inside the European Columbus module of the International Space Station using Geant4. Since Geant4 has not been previously used for this type of application it needs to be validated. This will be followed by a detailed evaluation of the incident radiation fields on ISS and culminate with the geometry modeling and full-scale flux and dose simulations for Columbus. Geant4 validation studies and comparisons to other tools are presented. These concern the angle and energy distributions of particles leaving irradiated targets and of energy depositions in the targets. Comparisons are made between simulations using different Geant4 physics models, experimental data, and other particle transport programs. Geant4 using the Binary Cascade model for inelastic nucleon reactions performs very well in these comparisons, but some issues with other models remain to be resolved if they are to be used for space radiation shielding applications. Results of Geant4 simulations of the transport of some relevant radiation field components through the hull of a simplified model of Columbus are also presented.
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